Wall clock time and date at job start Tue Mar 31 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29449 * 117.96123 * 2 1 4 4 C 1.50063 * 124.07281 * 179.51082 * 3 2 1 5 5 C 1.53019 * 110.15310 * 17.13124 * 4 3 2 6 6 C 1.53394 * 108.43826 * 310.56706 * 5 4 3 7 7 H 1.08999 * 109.63921 * 307.74417 * 6 5 4 8 8 C 1.52996 * 109.64182 * 187.32920 * 6 5 4 9 9 C 1.50067 * 117.96348 * 179.73963 * 2 1 3 10 10 H 1.09002 * 109.35754 * 76.94498 * 9 2 1 11 11 C 1.52995 * 109.35767 * 317.36081 * 9 2 1 12 12 N 1.46494 * 109.47365 * 68.47634 * 11 9 2 13 13 C 1.36934 * 120.00097 * 217.10767 * 12 11 9 14 14 H 1.08005 * 119.99970 * 147.48613 * 13 12 11 15 15 C 1.38813 * 120.00184 * 327.49414 * 13 12 11 16 16 N 1.31621 * 120.00082 * 9.68602 * 15 13 12 17 17 Si 1.86804 * 119.99991 * 189.68734 * 15 13 12 18 18 H 1.48501 * 109.47193 * 90.00025 * 17 15 13 19 19 H 1.48495 * 109.46988 * 209.99804 * 17 15 13 20 20 H 1.48502 * 109.47001 * 330.00075 * 17 15 13 21 21 C 1.46501 * 120.00030 * 37.11309 * 12 11 9 22 22 C 1.52997 * 109.47471 * 94.37988 * 21 12 11 23 23 C 1.50699 * 109.47469 * 184.89914 * 22 21 12 24 24 O 1.20827 * 119.99464 * 0.02562 * 23 22 21 25 25 O 1.34229 * 120.00059 * 179.97438 * 23 22 21 26 26 H 1.09002 * 109.46944 * 6.11686 * 1 2 3 27 27 H 1.08997 * 109.47287 * 126.12203 * 1 2 3 28 28 H 1.09003 * 109.46789 * 246.11822 * 1 2 3 29 29 H 1.07996 * 117.96035 * 359.48986 * 3 2 1 30 30 H 1.09004 * 109.36015 * 137.34472 * 4 3 2 31 31 H 1.09000 * 109.36128 * 256.92128 * 4 3 2 32 32 H 1.09008 * 109.64244 * 70.24844 * 5 4 3 33 33 H 1.09001 * 109.64639 * 190.87742 * 5 4 3 34 34 H 1.09004 * 109.47275 * 59.99758 * 8 6 5 35 35 H 1.09004 * 109.47193 * 180.02562 * 8 6 5 36 36 H 1.09000 * 109.47258 * 299.99699 * 8 6 5 37 37 H 1.08999 * 109.46958 * 188.48398 * 11 9 2 38 38 H 1.09000 * 109.47096 * 308.47319 * 11 9 2 39 39 H 0.97000 * 119.99849 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47247 * 214.38003 * 21 12 11 41 41 H 1.09004 * 109.46834 * 334.37682 * 21 12 11 42 42 H 1.09012 * 109.46838 * 304.90132 * 22 21 12 43 43 H 1.09003 * 109.47185 * 64.89686 * 22 21 12 44 44 H 0.96697 * 116.99766 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1434 0.0000 4 6 3.6060 1.3032 0.0106 5 6 4.2795 -0.0074 -0.4022 6 6 3.6703 -1.1472 0.4240 7 1 3.7163 -0.8966 1.4838 8 6 4.4466 -2.4403 0.1672 9 6 2.2107 -1.3254 0.0060 10 1 2.1749 -1.7580 -0.9938 11 6 1.5106 -2.2668 0.9881 12 7 0.1851 -2.6149 0.4704 13 6 -0.8716 -2.7519 1.3305 14 1 -1.8681 -2.4885 1.0079 15 6 -0.6620 -3.2291 2.6170 16 7 0.5638 -3.3692 3.0755 17 14 -2.1197 -3.6725 3.6978 18 1 -2.4719 -5.1005 3.4925 19 1 -1.7654 -3.4500 5.1225 20 1 -3.2807 -2.8196 3.3373 21 6 -0.0099 -2.8165 -0.9675 22 6 0.1221 -4.3049 -1.2964 23 6 0.0414 -4.4987 -2.7887 24 8 -0.1060 -3.5442 -3.5147 25 8 0.1344 -5.7316 -3.3113 26 1 -0.3633 1.0218 -0.1095 27 1 -0.3634 -0.6058 -0.8301 28 1 -0.3633 -0.4161 0.9397 29 1 1.5089 2.0379 -0.0085 30 1 3.8900 2.0909 -0.6873 31 1 3.9330 1.5770 1.0137 32 1 4.1060 -0.1903 -1.4627 33 1 5.3504 0.0540 -0.2083 34 1 5.4887 -2.3018 0.4550 35 1 4.0112 -3.2484 0.7551 36 1 4.3926 -2.6923 -0.8919 37 1 2.1036 -3.1735 1.1077 38 1 1.4051 -1.7718 1.9535 39 1 0.7102 -3.7030 3.9743 40 1 -1.0029 -2.4683 -1.2519 41 1 0.7439 -2.2543 -1.5187 42 1 1.0816 -4.6735 -0.9334 43 1 -0.6850 -4.8565 -0.8142 44 1 0.0767 -5.8059 -4.2737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594113631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:21 Heat of formation + Delta-G solvation = -70.794685 kcal Electronic energy + Delta-G solvation = -23824.984518 eV Core-core repulsion = 20549.673331 eV Total energy + Delta-G solvation = -3275.311187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85697 -39.03175 -36.08813 -35.54884 -33.06720 -32.07986 -31.56490 -29.35012 -27.49278 -25.65426 -24.81144 -24.24910 -22.14001 -20.93429 -20.18098 -19.30257 -17.75716 -17.10025 -16.82503 -16.05691 -15.56614 -14.88967 -14.51456 -14.33507 -13.87868 -13.54672 -13.40101 -13.07447 -12.79155 -12.70185 -12.21224 -11.98914 -11.88528 -11.80331 -11.54765 -11.22553 -11.19890 -11.07025 -10.94366 -10.85982 -10.56540 -10.42675 -10.32408 -10.21250 -10.07453 -10.02644 -9.71365 -9.45334 -9.38174 -8.44746 -7.99598 -6.63717 -5.86697 -3.34708 2.62209 2.97357 3.33035 3.41605 3.42159 3.50360 4.43632 5.17143 5.19567 5.23360 5.32087 5.50836 5.65238 5.73046 5.79326 5.83803 5.85899 5.93619 6.03998 6.06953 6.15018 6.22714 6.26636 6.30300 6.33035 6.42566 6.54843 6.56984 6.67829 6.69455 6.72847 6.78032 6.80639 6.91810 7.00536 7.13234 7.36263 7.57002 7.74801 7.77195 7.88157 8.25738 8.43348 9.19403 9.77996 10.32503 11.18711 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.008240 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.924951 B = 3397.281421 C = 4977.735584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.070 4.070 3 C -0.209 4.209 4 C -0.078 4.078 5 C -0.113 4.113 6 C -0.081 4.081 7 H 0.070 0.930 8 C -0.144 4.144 9 C -0.083 4.083 10 H 0.071 0.929 11 C 0.190 3.810 12 N -0.587 5.587 13 C -0.261 4.261 14 H 0.068 0.932 15 C 0.017 3.983 16 N -0.897 5.897 17 Si 0.896 3.104 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.156 3.844 22 C -0.135 4.135 23 C 0.477 3.523 24 O -0.526 6.526 25 O -0.525 6.525 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 1.811 -7.274 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.070 4.070 3 C -0.227 4.227 4 C -0.115 4.115 5 C -0.151 4.151 6 C -0.100 4.100 7 H 0.089 0.911 8 C -0.201 4.201 9 C -0.102 4.102 10 H 0.089 0.911 11 C 0.066 3.934 12 N -0.308 5.308 13 C -0.390 4.390 14 H 0.085 0.915 15 C -0.182 4.182 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.028 3.972 22 C -0.176 4.176 23 C 0.321 3.679 24 O -0.415 6.415 25 O -0.337 6.337 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.046 2.086 -6.819 8.736 hybrid contribution -0.823 -0.468 -0.030 0.947 sum 4.222 1.619 -6.849 8.207 Atomic orbital electron populations 1.21258 0.92110 0.99216 1.05189 1.20979 0.96395 0.94205 0.95411 1.21676 0.95302 0.96963 1.08742 1.20273 0.93570 0.97151 1.00489 1.21661 0.98546 0.95022 0.99821 1.21061 0.94703 0.94335 0.99915 0.91135 1.21831 0.99033 0.98090 1.01190 1.20820 0.93318 0.94580 1.01510 0.91118 1.20884 0.83811 0.93926 0.94799 1.43970 1.07045 1.79221 1.00563 1.19088 0.88397 1.37603 0.93902 0.91458 1.25283 0.96079 0.98292 0.98582 1.70002 1.18590 1.48370 1.17050 0.86394 0.82607 0.78756 0.79688 1.21325 1.21810 1.20435 1.20873 1.00044 0.89419 0.86877 1.22495 1.05372 1.05026 0.84677 1.24430 0.70727 0.79418 0.93360 1.90659 1.46078 1.41897 1.62898 1.84660 1.85328 1.34232 1.29438 0.95243 0.91533 0.88349 0.89065 0.92475 0.92048 0.92377 0.92587 0.93541 0.91670 0.93446 0.95464 0.89641 0.93464 0.93322 0.92370 0.88517 0.87909 0.74525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.17 36.01 0.29 -2.04 16 2 C -0.07 -1.29 5.45 -100.94 -0.55 -1.84 16 3 C -0.21 -3.50 9.40 -35.90 -0.34 -3.83 16 4 C -0.08 -1.12 6.11 -28.18 -0.17 -1.29 16 5 C -0.11 -1.61 5.31 -26.52 -0.14 -1.75 16 6 C -0.08 -1.32 2.18 -90.48 -0.20 -1.52 16 7 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 8 C -0.14 -2.16 9.04 37.16 0.34 -1.82 16 9 C -0.08 -1.53 1.44 -92.15 -0.13 -1.67 16 10 H 0.07 1.34 5.80 -51.93 -0.30 1.04 16 11 C 0.19 4.16 3.37 -4.05 -0.01 4.14 16 12 N -0.59 -13.02 1.32 -173.25 -0.23 -13.25 16 13 C -0.26 -6.43 8.05 -15.06 -0.12 -6.55 16 14 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 15 C 0.02 0.44 5.39 -17.43 -0.09 0.35 16 16 N -0.90 -23.88 10.44 55.49 0.58 -23.30 16 17 Si 0.90 20.57 29.56 -169.99 -5.03 15.55 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.16 3.06 2.79 -4.04 -0.01 3.05 16 22 C -0.13 -2.41 6.12 -27.89 -0.17 -2.58 16 23 C 0.48 7.87 8.33 36.01 0.30 8.17 16 24 O -0.53 -9.87 16.68 -18.75 -0.31 -10.18 16 25 O -0.53 -7.05 13.42 -39.26 -0.53 -7.58 16 26 H 0.03 0.51 7.57 -51.93 -0.39 0.11 16 27 H 0.07 1.30 5.23 -51.93 -0.27 1.03 16 28 H 0.10 2.17 5.79 -51.93 -0.30 1.87 16 29 H 0.09 1.46 7.57 -52.49 -0.40 1.07 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.84 8.13 -51.92 -0.42 0.42 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.07 6.67 -51.93 -0.35 0.72 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.64 6.36 -51.93 -0.33 0.31 16 38 H 0.09 2.16 6.49 -51.93 -0.34 1.82 16 39 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.05 0.99 7.59 -51.93 -0.39 0.59 16 41 H 0.06 1.14 4.88 -51.93 -0.25 0.89 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 44 H 0.40 3.44 9.10 45.56 0.41 3.85 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -27.40 336.34 -7.72 -35.12 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.26 Total: 7.78 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.01 Total: -9.19 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.35 Total: -36.55 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.84 Total: -17.76 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.40 -7.72 -35.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594113631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.679 kcal (2) G-P(sol) polarization free energy of solvation -27.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds