Wall clock time and date at job start Tue Mar 31 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46832 * 2 1 4 4 H 1.09002 * 109.46633 * 306.31772 * 3 2 1 5 5 N 1.46898 * 109.47164 * 66.32101 * 3 2 1 6 6 C 1.46900 * 110.99801 * 263.10415 * 5 3 2 7 7 C 1.53006 * 109.46986 * 273.94257 * 6 5 3 8 8 C 1.50695 * 115.55044 * 304.98498 * 7 6 5 9 9 H 1.07999 * 120.00437 * 144.03892 * 8 7 6 10 10 C 1.37880 * 119.99895 * 324.03652 * 8 7 6 11 11 N 1.31512 * 120.00014 * 3.07978 * 10 8 7 12 12 Si 1.86798 * 120.00050 * 183.08008 * 10 8 7 13 13 H 1.48502 * 109.47145 * 89.99516 * 12 10 8 14 14 H 1.48494 * 109.47393 * 209.99711 * 12 10 8 15 15 H 1.48501 * 109.47318 * 329.99875 * 12 10 8 16 16 C 1.52998 * 117.49609 * 159.30982 * 7 6 5 17 17 C 1.53004 * 117.49548 * 90.65352 * 7 6 5 18 18 C 1.53004 * 109.46915 * 186.31949 * 3 2 1 19 19 C 1.50689 * 112.85214 * 287.39892 * 18 3 2 20 20 O 1.20826 * 120.00187 * 5.97313 * 19 18 3 21 21 O 1.34231 * 120.00253 * 185.97145 * 19 18 3 22 22 C 1.53778 * 113.61127 * 156.09096 * 18 3 2 23 23 C 1.53780 * 87.08562 * 220.01924 * 22 18 3 24 24 C 1.53784 * 113.61182 * 58.59939 * 18 3 2 25 25 H 1.09002 * 109.47465 * 298.51656 * 1 2 3 26 26 H 1.08998 * 109.47380 * 58.52368 * 1 2 3 27 27 H 1.09009 * 109.46580 * 178.52403 * 1 2 3 28 28 H 1.08999 * 109.47667 * 240.00091 * 2 1 3 29 29 H 1.08998 * 109.47592 * 119.99362 * 2 1 3 30 30 H 1.00901 * 110.99780 * 139.14908 * 5 3 2 31 31 H 1.09001 * 109.47458 * 33.94117 * 6 5 3 32 32 H 1.08995 * 109.47012 * 153.94322 * 6 5 3 33 33 H 0.97000 * 120.00246 * 185.01116 * 11 10 8 34 34 H 1.08998 * 117.49990 * 0.02562 * 16 7 6 35 35 H 1.09002 * 117.49463 * 145.02400 * 16 7 6 36 36 H 1.09004 * 117.49432 * 214.98264 * 17 7 6 37 37 H 1.08992 * 117.49876 * 359.97233 * 17 7 6 38 38 H 0.96698 * 116.99901 * 180.02562 * 21 19 18 39 39 H 1.09004 * 113.61514 * 334.57092 * 22 18 3 40 40 H 1.09005 * 113.61290 * 105.46766 * 22 18 3 41 41 H 1.08994 * 113.61608 * 270.89152 * 23 22 18 42 42 H 1.08995 * 113.61578 * 139.97756 * 23 22 18 43 43 H 1.08996 * 113.61029 * 254.52257 * 24 18 3 44 44 H 1.09003 * 113.61930 * 25.34770 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5871 1.9880 -0.8281 5 7 1.6787 2.0897 1.2684 6 6 0.4462 2.8761 1.1258 7 6 0.7909 4.2763 0.6141 8 6 1.7998 5.0379 1.4345 9 1 2.5143 5.6848 0.9472 10 6 1.8107 4.9089 2.8072 11 7 0.9811 4.0755 3.3959 12 14 3.0038 5.9180 3.8307 13 1 2.3677 7.2066 4.2053 14 1 3.3601 5.1659 5.0605 15 1 4.2323 6.1840 3.0399 16 6 -0.3268 5.0791 -0.0545 17 6 0.8052 4.4911 -0.9007 18 6 3.5617 1.4456 -0.1588 19 6 4.2805 0.9831 1.0823 20 8 3.6511 0.5583 2.0221 21 8 5.6200 1.0431 1.1438 22 6 4.1175 2.7550 -0.7430 23 6 5.0856 1.8862 -1.5633 24 6 4.0481 0.7572 -1.4451 25 1 -0.3634 0.4906 0.9030 26 1 -0.3634 0.5366 -0.8764 27 1 -0.3633 -1.0274 -0.0265 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.4357 2.6625 1.6105 31 1 -0.2191 2.3837 0.4165 32 1 -0.0487 2.9547 2.0938 33 1 0.9376 4.0374 4.3642 34 1 -1.3078 4.6099 -0.1295 35 1 -0.3321 6.1582 0.0987 36 1 1.5442 5.1837 -1.3038 37 1 0.5695 3.6349 -1.5327 38 1 6.0362 0.7348 1.9603 39 1 3.3977 3.3013 -1.3526 40 1 4.6144 3.3857 -0.0059 41 1 6.0231 1.6732 -1.0497 42 1 5.2317 2.2397 -2.5839 43 1 4.4891 -0.2249 -1.2746 44 1 3.3089 0.7561 -2.2461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595292058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:55 Heat of formation + Delta-G solvation = -44.532732 kcal Electronic energy + Delta-G solvation = -24663.563166 eV Core-core repulsion = 21389.390783 eV Total energy + Delta-G solvation = -3274.172383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73102 -38.10624 -37.00504 -35.78339 -34.33654 -32.23457 -30.82099 -27.94661 -25.59506 -25.54980 -24.64390 -22.95728 -22.00361 -21.17538 -19.92322 -19.25131 -18.76237 -17.42071 -16.17621 -15.93051 -15.36175 -15.04371 -14.63928 -14.45741 -13.97156 -13.81969 -13.13393 -13.04112 -12.81996 -12.37075 -12.19088 -12.12676 -11.77419 -11.61059 -11.27390 -11.10713 -11.04851 -11.02926 -10.77618 -10.73394 -10.55245 -10.35002 -10.29442 -10.09455 -9.95965 -9.68171 -9.61079 -9.29239 -8.85215 -8.79897 -8.11613 -6.87328 -5.90754 -4.09443 2.68315 3.26305 3.35357 3.35965 3.39551 4.36066 4.69512 4.77818 4.90825 5.02051 5.06873 5.47886 5.55422 5.61524 5.71361 5.78314 5.83822 5.96371 5.99376 6.04790 6.07133 6.17460 6.27708 6.33775 6.39431 6.43489 6.46212 6.57447 6.63664 6.64182 6.69922 6.79078 6.86861 6.94507 6.97488 7.05247 7.29751 7.44178 7.70911 8.13839 8.33640 8.40626 8.67133 8.82540 8.97728 9.52795 10.97862 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.008553 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.828574 B = 3272.831692 C = 3896.895213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.111 3.889 4 H 0.056 0.944 5 N -0.645 5.645 6 C 0.098 3.902 7 C 0.028 3.972 8 C -0.496 4.496 9 H 0.055 0.945 10 C 0.075 3.925 11 N -0.858 5.858 12 Si 0.886 3.114 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.209 4.209 17 C -0.216 4.216 18 C -0.083 4.083 19 C 0.493 3.507 20 O -0.472 6.472 21 O -0.523 6.523 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.116 4.116 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.353 0.647 31 H 0.024 0.976 32 H 0.117 0.883 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.401 0.599 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -6.895 -7.831 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.000 4.000 4 H 0.074 0.926 5 N -0.277 5.277 6 C -0.031 4.031 7 C 0.026 3.974 8 C -0.533 4.533 9 H 0.073 0.927 10 C -0.130 4.130 11 N -0.494 5.494 12 Si 0.714 3.286 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.248 4.248 17 C -0.254 4.254 18 C -0.085 4.085 19 C 0.333 3.667 20 O -0.355 6.355 21 O -0.336 6.336 22 C -0.151 4.151 23 C -0.180 4.180 24 C -0.154 4.154 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.175 0.825 31 H 0.042 0.958 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.259 0.741 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.164 -7.573 -7.441 11.806 hybrid contribution 1.082 1.370 0.495 1.814 sum 6.246 -6.203 -6.946 11.213 Atomic orbital electron populations 1.21754 0.96284 0.99997 1.02174 1.21612 0.95920 0.96739 1.00876 1.21484 0.88033 0.95808 0.94716 0.92585 1.60863 1.07979 1.36429 1.22437 1.21994 0.91090 0.88128 1.01907 1.19980 0.94950 0.95020 0.87458 1.20456 1.15666 1.26413 0.90812 0.92703 1.24968 0.95713 0.94461 0.97863 1.69893 1.36254 1.33580 1.09682 0.86677 0.81523 0.80269 0.80127 1.20700 1.21076 1.19977 1.22905 0.93091 0.99339 1.09425 1.22899 1.02789 1.02164 0.97499 1.21981 0.96247 0.99634 0.90633 1.22676 0.79790 0.75376 0.88889 1.90785 1.66898 1.40572 1.37295 1.84538 1.23289 1.80105 1.45637 1.22895 0.98417 0.94524 0.99263 1.22967 0.98180 0.96545 1.00341 1.22864 0.98776 0.98136 0.95646 0.91050 0.94007 0.94214 0.93718 0.90919 0.82477 0.95809 0.86550 0.92772 0.91914 0.90865 0.91219 0.91881 0.74133 0.88666 0.90622 0.89156 0.91528 0.91433 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.65 37.16 0.32 -2.04 16 2 C -0.11 -1.90 5.31 -26.73 -0.14 -2.04 16 3 C 0.11 2.00 1.53 -67.71 -0.10 1.90 16 4 H 0.06 1.04 5.63 -51.93 -0.29 0.75 16 5 N -0.65 -14.13 4.96 -106.72 -0.53 -14.65 16 6 C 0.10 2.26 3.97 -3.82 -0.02 2.24 16 7 C 0.03 0.65 2.04 -155.66 -0.32 0.34 16 8 C -0.50 -12.81 8.08 -34.44 -0.28 -13.09 16 9 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 10 C 0.07 1.95 4.75 -17.82 -0.08 1.87 16 11 N -0.86 -23.08 10.17 55.43 0.56 -22.52 16 12 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 C -0.21 -4.67 9.96 -26.70 -0.27 -4.93 16 17 C -0.22 -4.53 9.20 -26.69 -0.25 -4.77 16 18 C -0.08 -1.34 0.45 -154.85 -0.07 -1.41 16 19 C 0.49 8.47 6.74 36.00 0.24 8.71 16 20 O -0.47 -9.68 14.48 -18.75 -0.27 -9.95 16 21 O -0.52 -7.15 11.53 -39.26 -0.45 -7.60 16 22 C -0.11 -1.78 7.12 -25.92 -0.18 -1.96 16 23 C -0.14 -1.79 7.63 -25.92 -0.20 -1.98 16 24 C -0.12 -1.49 6.09 -25.91 -0.16 -1.64 16 25 H 0.07 1.32 6.46 -51.93 -0.34 0.99 16 26 H 0.04 0.65 8.04 -51.93 -0.42 0.23 16 27 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.04 0.65 7.16 -51.93 -0.37 0.27 16 29 H 0.07 1.36 6.82 -51.93 -0.35 1.01 16 30 H 0.35 8.60 5.50 -39.29 -0.22 8.38 16 31 H 0.02 0.51 5.71 -51.93 -0.30 0.22 16 32 H 0.12 3.07 5.87 -51.93 -0.30 2.76 16 33 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.06 1.23 7.18 -51.93 -0.37 0.85 16 38 H 0.40 3.89 9.10 45.56 0.41 4.30 16 39 H 0.09 1.54 7.89 -51.93 -0.41 1.13 16 40 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.09 1.12 6.86 -51.93 -0.36 0.76 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 44 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -28.11 336.81 -8.36 -36.47 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.23 Total: 16.32 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.50 Total: -18.82 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.03 Total: -37.17 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.72 Total: -17.56 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.11 -8.36 -36.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595292058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.061 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds