Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46979 * 2 1 4 4 H 1.09002 * 109.47038 * 54.27041 * 3 2 1 5 5 N 1.46900 * 109.47172 * 294.27685 * 3 2 1 6 6 C 1.46898 * 111.00470 * 108.63673 * 5 3 2 7 7 C 1.53001 * 109.47166 * 184.59827 * 6 5 3 8 8 C 1.50704 * 115.54874 * 300.69530 * 7 6 5 9 9 H 1.07990 * 120.00076 * 146.64520 * 8 7 6 10 10 C 1.37881 * 119.99851 * 326.64577 * 8 7 6 11 11 N 1.31513 * 120.00162 * 347.47017 * 10 8 7 12 12 Si 1.86796 * 119.99654 * 167.46851 * 10 8 7 13 13 H 1.48502 * 109.47575 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47147 * 120.00474 * 12 10 8 15 15 H 1.48504 * 109.46947 * 239.99883 * 12 10 8 16 16 C 1.53002 * 117.49784 * 155.03238 * 7 6 5 17 17 C 1.52993 * 117.50257 * 86.36867 * 7 6 5 18 18 C 1.53000 * 109.47376 * 174.27444 * 3 2 1 19 19 C 1.50704 * 112.84729 * 66.19914 * 18 3 2 20 20 O 1.20822 * 119.99774 * 354.53455 * 19 18 3 21 21 O 1.34225 * 119.99718 * 174.25329 * 19 18 3 22 22 C 1.53775 * 113.69252 * 197.47269 * 18 3 2 23 23 C 1.53777 * 87.08419 * 89.12494 * 22 18 3 24 24 C 1.53779 * 113.61200 * 295.00738 * 18 3 2 25 25 H 1.08994 * 109.47241 * 303.41816 * 1 2 3 26 26 H 1.08997 * 109.46981 * 63.42212 * 1 2 3 27 27 H 1.09006 * 109.46980 * 183.41739 * 1 2 3 28 28 H 1.09000 * 109.47063 * 240.00068 * 2 1 3 29 29 H 1.08994 * 109.47059 * 119.99792 * 2 1 3 30 30 H 1.00905 * 110.99845 * 232.59140 * 5 3 2 31 31 H 1.09004 * 109.46413 * 304.59162 * 6 5 3 32 32 H 1.09000 * 109.47511 * 64.59090 * 6 5 3 33 33 H 0.97001 * 120.00102 * 185.12175 * 11 10 8 34 34 H 1.09001 * 117.50117 * 359.97438 * 16 7 6 35 35 H 1.08999 * 117.49812 * 145.01892 * 16 7 6 36 36 H 1.08992 * 117.50403 * 214.97735 * 17 7 6 37 37 H 1.09006 * 117.49973 * 359.97438 * 17 7 6 38 38 H 0.96699 * 117.00283 * 180.02562 * 21 19 18 39 39 H 1.09005 * 113.61340 * 203.67879 * 22 18 3 40 40 H 1.09003 * 113.61791 * 334.57521 * 22 18 3 41 41 H 1.08997 * 113.61572 * 270.88411 * 23 22 18 42 42 H 1.09001 * 113.61477 * 139.97617 * 23 22 18 43 43 H 1.09005 * 113.61656 * 25.34688 * 24 18 3 44 44 H 1.09006 * 113.61507 * 156.24602 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9850 0.8343 5 7 1.6663 2.0939 -1.2625 6 6 0.6099 3.0918 -1.0476 7 6 0.1680 3.6651 -2.3956 8 6 1.2490 4.3386 -3.2012 9 1 1.2287 4.2893 -4.2798 10 6 2.2640 5.0177 -2.5611 11 7 2.1655 5.2913 -1.2786 12 14 3.7791 5.5491 -3.5158 13 1 3.6459 5.1242 -4.9325 14 1 3.9106 7.0270 -3.4530 15 1 4.9852 4.9192 -2.9208 16 6 -1.2458 4.2426 -2.4883 17 6 -0.9176 2.9085 -3.1634 18 6 3.5632 1.4450 0.1439 19 6 4.2644 0.8435 -1.0468 20 8 3.6205 0.3356 -1.9340 21 8 5.6040 0.8771 -1.1242 22 6 4.1406 2.8025 0.5780 23 6 3.9511 2.3303 2.0292 24 6 4.0554 0.8931 1.4922 25 1 -0.3633 0.5659 0.8577 26 1 -0.3633 0.4598 -0.9191 27 1 -0.3633 -1.0259 0.0613 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4712 2.5095 -1.7070 31 1 -0.2413 2.6197 -0.5570 32 1 0.9920 3.8957 -0.4184 33 1 2.8433 5.8328 -0.8446 34 1 -1.8612 4.2138 -1.5892 35 1 -1.3941 5.1094 -3.1324 36 1 -0.8504 2.8981 -4.2512 37 1 -1.3169 2.0020 -2.7084 38 1 6.0087 0.4790 -1.9070 39 1 5.1845 2.9429 0.2972 40 1 3.5112 3.6508 0.3092 41 1 2.9720 2.5720 2.4427 42 1 4.7716 2.6101 2.6901 43 1 3.3572 0.1999 1.9615 44 1 5.0760 0.5114 1.4615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595292060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = -48.474786 kcal Electronic energy + Delta-G solvation = -24468.805628 eV Core-core repulsion = 21194.462304 eV Total energy + Delta-G solvation = -3274.343323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76752 -38.29576 -36.80830 -35.83991 -34.36721 -32.23283 -31.08591 -27.86261 -25.76130 -25.52383 -24.97990 -23.01204 -21.58073 -20.99073 -20.48870 -19.17613 -18.56888 -17.30142 -16.55978 -16.07376 -15.46077 -15.11731 -14.70367 -14.28256 -13.92437 -13.72913 -13.33589 -13.22879 -12.79560 -12.52321 -12.28656 -12.02064 -11.88762 -11.52607 -11.38513 -11.17624 -11.03854 -11.01990 -10.95945 -10.72483 -10.62383 -10.40221 -10.26533 -10.12165 -10.06842 -9.89235 -9.48402 -9.17808 -8.96457 -8.61634 -8.05353 -7.11161 -5.96224 -4.04964 2.60086 3.21993 3.32053 3.34861 3.38616 4.35272 4.61045 4.72916 4.77814 4.96393 4.99717 5.33498 5.49473 5.61665 5.68892 5.75190 5.80233 5.84984 5.89970 5.99356 6.03804 6.19318 6.25317 6.30090 6.40030 6.43452 6.50088 6.55234 6.58081 6.75620 6.77636 6.85178 6.89222 6.98798 7.02576 7.07570 7.31051 7.45986 7.63289 8.02529 8.31227 8.36917 8.51370 8.66244 8.93067 9.51326 10.94236 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.008953 C = 0.006807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.535781 B = 3126.745651 C = 4112.424620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.126 3.874 4 H 0.060 0.940 5 N -0.656 5.656 6 C 0.092 3.908 7 C 0.061 3.939 8 C -0.471 4.471 9 H 0.058 0.942 10 C 0.068 3.932 11 N -0.881 5.881 12 Si 0.881 3.119 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.282 1.282 16 C -0.209 4.209 17 C -0.202 4.202 18 C -0.086 4.086 19 C 0.483 3.517 20 O -0.482 6.482 21 O -0.524 6.524 22 C -0.131 4.131 23 C -0.135 4.135 24 C -0.121 4.121 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.348 0.652 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.403 0.597 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -7.631 7.381 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.078 0.922 5 N -0.288 5.288 6 C -0.036 4.036 7 C 0.061 3.939 8 C -0.508 4.508 9 H 0.076 0.924 10 C -0.133 4.133 11 N -0.520 5.520 12 Si 0.709 3.291 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.208 1.208 16 C -0.247 4.247 17 C -0.239 4.239 18 C -0.088 4.088 19 C 0.324 3.676 20 O -0.366 6.366 21 O -0.336 6.336 22 C -0.169 4.169 23 C -0.172 4.172 24 C -0.159 4.159 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.169 0.831 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.261 0.739 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.092 -8.045 7.435 11.694 hybrid contribution 1.533 0.821 -0.750 1.894 sum 5.625 -7.223 6.686 11.337 Atomic orbital electron populations 1.21666 0.96024 0.99914 1.02248 1.21666 0.96104 0.96308 1.01281 1.21208 0.86956 0.96182 0.94184 0.92183 1.60515 1.14365 1.34744 1.19202 1.21728 0.91992 0.92839 0.97083 1.18892 0.86618 0.95018 0.93396 1.20632 1.05959 1.31741 0.92504 0.92420 1.24915 0.97813 0.95673 0.94855 1.69856 1.34778 1.37692 1.09711 0.86687 0.83521 0.78172 0.80748 1.19702 1.21109 1.20769 1.22955 1.04703 0.95926 1.01151 1.22784 1.09265 0.93789 0.98057 1.22402 0.97005 0.98772 0.90659 1.23210 0.79851 0.76695 0.87855 1.90744 1.66023 1.40813 1.39065 1.84497 1.23570 1.76257 1.49303 1.23082 1.02122 0.96156 0.95508 1.22804 1.02293 0.95440 0.96681 1.22979 1.01697 0.97619 0.93590 0.94019 0.91210 0.94161 0.90263 0.93663 0.83138 0.95515 0.89906 0.93112 0.92030 0.90807 0.91251 0.91444 0.73929 0.89513 0.88235 0.89748 0.91217 0.90505 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.03 37.16 0.34 -1.92 16 2 C -0.12 -1.89 5.27 -26.73 -0.14 -2.04 16 3 C 0.13 2.23 1.47 -67.71 -0.10 2.13 16 4 H 0.06 1.07 6.76 -51.93 -0.35 0.72 16 5 N -0.66 -14.08 5.13 -106.73 -0.55 -14.63 16 6 C 0.09 2.11 4.29 -3.82 -0.02 2.09 16 7 C 0.06 1.52 2.07 -155.66 -0.32 1.20 16 8 C -0.47 -12.63 8.52 -34.44 -0.29 -12.92 16 9 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 10 C 0.07 1.77 4.46 -17.82 -0.08 1.69 16 11 N -0.88 -22.49 10.23 55.43 0.57 -21.92 16 12 Si 0.88 20.54 29.56 -169.99 -5.02 15.51 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C -0.21 -4.83 9.95 -26.69 -0.27 -5.09 16 17 C -0.20 -4.61 9.95 -26.69 -0.27 -4.87 16 18 C -0.09 -1.39 0.37 -154.85 -0.06 -1.45 16 19 C 0.48 8.30 6.71 36.01 0.24 8.54 16 20 O -0.48 -9.68 14.24 -18.75 -0.27 -9.95 16 21 O -0.52 -7.35 12.68 -39.24 -0.50 -7.84 16 22 C -0.13 -2.11 7.14 -25.92 -0.19 -2.29 16 23 C -0.13 -1.73 7.73 -25.92 -0.20 -1.93 16 24 C -0.12 -1.53 7.00 -25.92 -0.18 -1.71 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.28 7.16 -51.93 -0.37 0.91 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 29 H 0.04 0.64 6.56 -51.93 -0.34 0.30 16 30 H 0.35 8.31 5.93 -39.29 -0.23 8.08 16 31 H 0.03 0.58 6.88 -51.93 -0.36 0.23 16 32 H 0.08 2.05 5.70 -51.93 -0.30 1.76 16 33 H 0.26 6.34 8.32 -40.82 -0.34 6.00 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.40 3.99 9.10 45.56 0.41 4.40 16 39 H 0.09 1.36 7.66 -51.93 -0.40 0.96 16 40 H 0.10 1.89 7.68 -51.93 -0.40 1.50 16 41 H 0.08 1.08 7.62 -51.93 -0.40 0.68 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.89 6.65 -51.93 -0.35 0.55 16 44 H 0.09 1.03 7.96 -51.93 -0.41 0.61 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -28.05 342.22 -8.46 -36.51 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -6.32 Total: 15.74 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.53 Total: -18.57 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.02 Total: -36.55 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.76 Total: -17.79 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.05 -8.46 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595292060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.965 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds