Wall clock time and date at job start Tue Mar 31 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.45758 * 2 1 4 4 C 1.53031 * 109.46323 * 119.97887 * 2 1 3 5 5 C 1.53125 * 109.27994 * 60.83437 * 4 2 1 6 6 C 1.50695 * 109.52153 * 177.55985 * 5 4 2 7 7 O 1.20821 * 120.00440 * 0.12526 * 6 5 4 8 8 O 1.34234 * 119.99598 * 180.12967 * 6 5 4 9 9 C 1.53125 * 109.20699 * 57.62457 * 5 4 2 10 10 C 1.53047 * 109.27482 * 302.43802 * 9 5 4 11 11 H 1.09003 * 109.40367 * 299.08092 * 10 9 5 12 12 C 1.52995 * 109.46146 * 179.13505 * 10 9 5 13 13 N 1.46844 * 109.57440 * 59.08589 * 10 9 5 14 14 C 1.46900 * 111.00025 * 174.18943 * 13 10 9 15 15 C 1.53007 * 109.47250 * 192.03275 * 14 13 10 16 16 C 1.50700 * 115.54818 * 39.57066 * 15 14 13 17 17 H 1.07999 * 120.00158 * 2.52022 * 16 15 14 18 18 C 1.37881 * 119.99739 * 182.51511 * 16 15 14 19 19 N 1.31514 * 120.00099 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46845 * 90.00118 * 20 18 16 22 22 H 1.48497 * 109.47193 * 209.99747 * 20 18 16 23 23 H 1.48503 * 109.47147 * 330.00134 * 20 18 16 24 24 C 1.52999 * 117.49726 * 253.86634 * 15 14 13 25 25 C 1.52993 * 60.00080 * 252.51037 * 24 15 14 26 26 H 1.08995 * 109.46788 * 300.02060 * 1 2 3 27 27 H 1.09005 * 109.47055 * 60.01891 * 1 2 3 28 28 H 1.08993 * 109.46665 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.50159 * 300.89887 * 4 2 1 30 30 H 1.09001 * 109.53779 * 180.79761 * 4 2 1 31 31 H 1.08999 * 109.51890 * 297.69236 * 5 4 2 32 32 H 0.96697 * 116.99956 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.50461 * 62.31559 * 9 5 4 34 34 H 1.08997 * 109.49692 * 182.43959 * 9 5 4 35 35 H 1.09006 * 109.47053 * 292.36821 * 12 10 9 36 36 H 1.08995 * 109.47448 * 52.36680 * 12 10 9 37 37 H 1.08997 * 109.47046 * 172.37046 * 12 10 9 38 38 H 1.08996 * 109.47473 * 312.03431 * 14 13 10 39 39 H 1.08997 * 109.47100 * 72.03141 * 14 13 10 40 40 H 0.96994 * 120.00080 * 180.02562 * 19 18 16 41 41 H 1.08999 * 117.49914 * 0.02562 * 24 15 14 42 42 H 1.09000 * 117.49792 * 145.01607 * 24 15 14 43 43 H 1.09003 * 117.50089 * 252.51667 * 25 24 15 44 44 H 1.09000 * 117.50079 * 107.48907 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7210 1.2498 5 6 1.5443 -2.1697 1.2354 6 6 2.0927 -2.9015 2.4332 7 8 2.8051 -2.3242 3.2199 8 8 1.7898 -4.1949 2.6259 9 6 2.0257 -2.8541 -0.0470 10 6 1.5174 -2.0703 -1.2593 11 1 0.4275 -2.0606 -1.2532 12 6 2.0141 -2.7384 -2.5430 13 7 2.0193 -0.6916 -1.1995 14 6 1.6651 0.0509 -2.4166 15 6 2.4464 1.3658 -2.4574 16 6 3.8772 1.2864 -1.9910 17 1 4.2973 0.3360 -1.6964 18 6 4.6501 2.4271 -1.9405 19 7 4.1385 3.5845 -2.2988 20 14 6.4239 2.3286 -1.3631 21 1 7.3104 2.0787 -2.5279 22 1 6.8058 3.6096 -0.7163 23 1 6.5656 1.2192 -0.3861 24 6 1.6767 2.6543 -2.1607 25 6 2.1256 2.3433 -3.5898 26 1 -0.3633 0.5141 0.8898 27 1 -0.3633 0.5136 -0.8902 28 1 -0.3632 -1.0276 0.0005 29 1 1.6637 -0.2165 2.1399 30 1 3.1299 -0.7093 1.2582 31 1 0.4549 -2.1822 1.2681 32 1 2.1653 -4.6219 3.4081 33 1 3.1154 -2.8769 -0.0604 34 1 1.6393 -3.8726 -0.0829 35 1 3.0964 -2.6297 -2.6138 36 1 1.7557 -3.7971 -2.5251 37 1 1.5442 -2.2642 -3.4046 38 1 1.9148 -0.5474 -3.2928 39 1 0.5961 0.2633 -2.4144 40 1 4.6823 4.3869 -2.2636 41 1 0.6138 2.5653 -1.9361 42 1 2.2051 3.4449 -1.6280 43 1 2.9495 2.9292 -3.9974 44 1 1.3580 2.0496 -4.3059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604654745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:22 Heat of formation + Delta-G solvation = -58.397973 kcal Electronic energy + Delta-G solvation = -24019.322948 eV Core-core repulsion = 20744.549323 eV Total energy + Delta-G solvation = -3274.773625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63550 -39.16748 -36.39244 -36.07397 -33.28843 -32.78574 -31.31680 -28.39894 -26.41581 -26.05552 -25.34538 -23.57552 -21.88123 -20.64403 -20.29676 -18.91241 -18.30579 -17.90210 -16.62048 -16.01755 -15.73940 -15.25988 -14.96247 -14.64853 -13.90530 -13.84084 -13.42261 -13.27452 -12.85308 -12.75457 -12.23281 -12.14059 -11.93486 -11.63291 -11.52941 -11.43324 -11.29805 -10.95175 -10.89171 -10.75467 -10.57481 -10.54422 -10.36591 -10.09975 -10.00491 -9.88604 -9.83252 -9.32762 -8.67478 -8.21721 -7.91291 -7.43280 -5.81902 -3.83687 2.23619 3.05777 3.37356 3.44798 3.50150 4.42215 4.52708 4.74505 4.86632 5.01879 5.20976 5.32086 5.48244 5.53451 5.54969 5.65487 5.72092 5.76395 5.86593 5.91965 5.96003 6.07542 6.11793 6.18428 6.29883 6.34549 6.40850 6.44254 6.48057 6.55130 6.63559 6.71788 6.80991 6.85431 7.13440 7.27847 7.38133 7.75309 7.87902 7.90213 7.99408 8.18638 8.31930 8.70677 9.17152 9.70729 11.14286 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.006234 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.855378 B = 4490.369709 C = 5154.968927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.089 3.911 3 H 0.110 0.890 4 C -0.093 4.093 5 C -0.080 4.080 6 C 0.482 3.518 7 O -0.513 6.513 8 O -0.520 6.520 9 C -0.098 4.098 10 C 0.076 3.924 11 H 0.038 0.962 12 C -0.146 4.146 13 N -0.502 5.502 14 C 0.096 3.904 15 C 0.026 3.974 16 C -0.444 4.444 17 H 0.072 0.928 18 C 0.051 3.949 19 N -0.887 5.887 20 Si 0.891 3.109 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.273 1.273 24 C -0.193 4.193 25 C -0.191 4.191 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.404 0.596 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.015 0.985 40 H 0.255 0.745 41 H 0.035 0.965 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -12.807 4.981 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.019 4.019 3 H 0.128 0.872 4 C -0.131 4.131 5 C -0.099 4.099 6 C 0.324 3.676 7 O -0.400 6.400 8 O -0.331 6.331 9 C -0.136 4.136 10 C -0.032 4.032 11 H 0.055 0.945 12 C -0.203 4.203 13 N -0.225 5.225 14 C -0.031 4.031 15 C 0.025 3.975 16 C -0.481 4.481 17 H 0.090 0.910 18 C -0.149 4.149 19 N -0.527 5.527 20 Si 0.719 3.281 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.198 1.198 24 C -0.231 4.231 25 C -0.230 4.230 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.971 -12.296 4.869 14.950 hybrid contribution 0.199 -0.077 0.790 0.818 sum -6.772 -12.373 5.659 15.198 Atomic orbital electron populations 1.22554 0.99066 1.01017 1.02213 1.21624 0.91168 1.00197 0.88947 0.87164 1.21547 1.02914 0.90790 0.97875 1.21243 1.01903 0.96076 0.90652 1.23785 0.77458 0.79604 0.86756 1.90718 1.35356 1.67929 1.46010 1.84566 1.71557 1.26736 1.50284 1.21608 1.02412 0.98019 0.91563 1.21574 0.96598 0.90602 0.94461 0.94469 1.21885 1.02885 0.98934 0.96592 1.62037 1.58508 0.99702 1.02291 1.21730 0.95147 0.95296 0.90921 1.18961 0.94479 0.85087 0.98944 1.20628 0.93409 0.94100 1.39999 0.90992 1.25037 0.98186 0.95688 0.95958 1.70013 1.35322 0.98566 1.48809 0.86605 0.85445 0.77223 0.78787 1.21094 1.21675 1.19831 1.22956 0.94818 1.05291 1.00058 1.22736 1.01776 1.07748 0.90718 0.92609 0.92172 0.93082 0.91352 0.89812 0.87858 0.73750 0.90452 0.90967 0.91255 0.92980 0.92383 0.91582 0.96693 0.93506 0.94702 0.86782 0.87816 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 8.20 37.16 0.30 -2.44 16 2 C 0.09 1.52 2.73 -67.72 -0.19 1.33 16 3 H 0.11 2.28 6.59 -51.93 -0.34 1.94 16 4 C -0.09 -1.46 4.20 -26.65 -0.11 -1.57 16 5 C -0.08 -1.03 2.39 -91.64 -0.22 -1.25 16 6 C 0.48 6.35 7.63 36.00 0.27 6.62 16 7 O -0.51 -8.44 16.73 -18.75 -0.31 -8.75 16 8 O -0.52 -5.18 13.35 -39.27 -0.52 -5.71 16 9 C -0.10 -1.26 4.59 -26.64 -0.12 -1.38 16 10 C 0.08 1.08 2.15 -67.72 -0.15 0.94 16 11 H 0.04 0.51 6.19 -51.93 -0.32 0.19 16 12 C -0.15 -1.93 8.54 37.16 0.32 -1.61 16 13 N -0.50 -8.84 3.52 -218.75 -0.77 -9.61 16 14 C 0.10 1.87 4.65 -3.82 -0.02 1.85 16 15 C 0.03 0.62 1.49 -155.66 -0.23 0.38 16 16 C -0.44 -11.63 8.46 -34.44 -0.29 -11.92 16 17 H 0.07 1.92 7.44 -52.49 -0.39 1.53 16 18 C 0.05 1.37 5.28 -17.82 -0.09 1.27 16 19 N -0.89 -24.56 8.59 55.43 0.48 -24.08 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.19 -4.67 8.77 -26.74 -0.23 -4.90 16 25 C -0.19 -4.66 9.39 -26.74 -0.25 -4.91 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.94 6.39 -51.93 -0.33 0.61 16 28 H 0.05 0.65 4.80 -51.93 -0.25 0.40 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.51 8.04 -51.93 -0.42 1.10 16 31 H 0.10 1.19 6.56 -51.93 -0.34 0.85 16 32 H 0.40 2.33 9.10 45.56 0.41 2.74 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.57 8.13 -51.93 -0.42 0.14 16 37 H 0.06 0.78 6.53 -51.93 -0.34 0.44 16 38 H 0.07 1.26 5.72 -51.93 -0.30 0.96 16 39 H 0.02 0.28 5.94 -51.93 -0.31 -0.02 16 40 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.11 3.09 6.07 -51.93 -0.31 2.77 16 43 H 0.10 2.82 6.50 -51.93 -0.34 2.48 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -29.37 330.76 -8.26 -37.64 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.09 Total: 6.71 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.01 Total: -17.60 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.29 Total: -33.68 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.84 Total: -14.46 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.37 -8.26 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604654745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.760 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds