Wall clock time and date at job start Tue Mar 31 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53014 * 1 3 3 H 1.11077 * 106.60611 * 2 1 4 4 C 1.52449 * 110.15990 * 244.30387 * 2 1 3 5 5 C 1.52904 * 110.34486 * 283.67969 * 4 2 1 6 6 H 1.08725 * 110.31668 * 61.35566 * 5 4 2 7 7 C 1.50977 * 109.26677 * 181.23293 * 5 4 2 8 8 O 1.20827 * 119.99504 * 118.69360 * 7 5 4 9 9 O 1.34225 * 120.00490 * 298.68453 * 7 5 4 10 10 C 1.52900 * 108.59157 * 300.34461 * 5 4 2 11 11 C 1.52433 * 110.37169 * 59.58386 * 10 5 4 12 12 H 1.11086 * 106.94447 * 191.93238 * 11 10 5 13 13 C 1.53021 * 110.16102 * 76.47586 * 11 10 5 14 14 N 1.44716 * 113.34550 * 310.47767 * 11 10 5 15 15 C 1.46897 * 112.23076 * 175.68967 * 14 11 10 16 16 C 1.52999 * 109.47379 * 170.00279 * 15 14 11 17 17 C 1.50696 * 115.54718 * 325.58001 * 16 15 14 18 18 H 1.07995 * 120.00449 * 358.99170 * 17 16 15 19 19 C 1.37880 * 120.00222 * 178.99751 * 17 16 15 20 20 N 1.31518 * 119.99776 * 5.50628 * 19 17 16 21 21 Si 1.86794 * 120.00441 * 185.51280 * 19 17 16 22 22 H 1.48508 * 109.46987 * 94.97772 * 21 19 17 23 23 H 1.48497 * 109.47306 * 214.97550 * 21 19 17 24 24 H 1.48502 * 109.47156 * 334.98176 * 21 19 17 25 25 C 1.53004 * 117.52013 * 111.28122 * 16 15 14 26 26 C 1.53000 * 117.49674 * 179.90995 * 16 15 14 27 27 H 1.08998 * 109.46575 * 302.56153 * 1 2 3 28 28 H 1.08999 * 109.47366 * 62.56046 * 1 2 3 29 29 H 1.08994 * 109.47006 * 182.56497 * 1 2 3 30 30 H 1.09260 * 109.56349 * 163.27801 * 4 2 1 31 31 H 1.09268 * 109.55742 * 44.06460 * 4 2 1 32 32 H 0.96694 * 117.00526 * 180.02562 * 9 7 5 33 33 H 1.09264 * 109.30596 * 299.01484 * 10 5 4 34 34 H 1.09270 * 109.29497 * 180.13993 * 10 5 4 35 35 H 1.09004 * 109.46819 * 293.09377 * 13 11 10 36 36 H 1.09001 * 109.47063 * 53.08503 * 13 11 10 37 37 H 1.08994 * 109.47424 * 173.09465 * 13 11 10 38 38 H 1.08998 * 109.46996 * 49.99420 * 15 14 11 39 39 H 1.09005 * 109.46870 * 289.99944 * 15 14 11 40 40 H 0.96998 * 120.00543 * 179.97438 * 20 19 17 41 41 H 1.08998 * 117.49903 * 214.96989 * 25 16 15 42 42 H 1.09004 * 117.49548 * 359.97438 * 25 16 15 43 43 H 1.08997 * 117.50361 * 359.97438 * 26 16 15 44 44 H 1.09001 * 117.49469 * 144.97404 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8476 1.0644 0.0000 4 6 2.0555 -0.6205 -1.2896 5 6 1.9205 -2.1428 -1.2405 6 1 0.8753 -2.4261 -1.1434 7 6 2.4749 -2.7334 -2.5146 8 8 3.4143 -3.4919 -2.4700 9 8 1.9241 -2.4160 -3.6968 10 6 2.7251 -2.6655 -0.0501 11 6 2.2062 -2.0588 1.2485 12 1 2.9519 -2.2956 2.0371 13 6 0.9001 -2.7395 1.6637 14 7 2.0659 -0.6195 1.1932 15 6 1.4700 -0.0717 2.4190 16 6 1.5782 1.4544 2.4008 17 6 2.8168 2.0103 1.7470 18 1 3.5626 1.3403 1.3455 19 6 2.9981 3.3745 1.6613 20 7 2.1459 4.1889 2.2444 21 14 4.4540 4.0658 0.7171 22 1 4.0351 4.3909 -0.6701 23 1 4.9399 5.2978 1.3889 24 1 5.5445 3.0584 0.6815 25 6 0.2818 2.2533 2.2525 26 6 1.0084 2.2172 3.5984 27 1 -0.3632 0.5531 0.8661 28 1 -0.3634 0.4735 -0.9120 29 1 -0.3633 -1.0266 0.0460 30 1 3.1072 -0.3552 -1.4213 31 1 1.4871 -0.2347 -2.1392 32 1 2.3131 -2.8193 -4.4848 33 1 3.7774 -2.4026 -0.1819 34 1 2.6384 -3.7538 -0.0056 35 1 0.1195 -2.4986 0.9420 36 1 1.0466 -3.8192 1.6935 37 1 0.6038 -2.3855 2.6511 38 1 2.0002 -0.4633 3.2871 39 1 0.4204 -0.3609 2.4735 40 1 2.2735 5.1486 2.1845 41 1 0.3248 3.1810 1.6819 42 1 -0.6486 1.6916 2.1673 43 1 0.5561 1.6321 4.3991 44 1 1.5297 3.1211 3.9136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604654748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:09 Heat of formation + Delta-G solvation = -59.742899 kcal Electronic energy + Delta-G solvation = -24181.140300 eV Core-core repulsion = 20906.308355 eV Total energy + Delta-G solvation = -3274.831945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61020 -39.12276 -36.47669 -36.04758 -33.26649 -32.69176 -31.38314 -28.57597 -26.32151 -25.89967 -25.57833 -23.68930 -21.60415 -21.02955 -20.68726 -18.83843 -18.08105 -17.51511 -16.96069 -16.07659 -15.52212 -15.01267 -14.96069 -14.36029 -14.17638 -13.67994 -13.49607 -13.33131 -12.94520 -12.61739 -12.46318 -12.26018 -12.10475 -11.61838 -11.54840 -11.34957 -11.06856 -10.99961 -10.92483 -10.74731 -10.58725 -10.54896 -10.35739 -10.10711 -10.01371 -9.94092 -9.45804 -9.32195 -8.67761 -8.23787 -7.98269 -7.10464 -5.88738 -3.89584 2.21768 3.04751 3.31924 3.40639 3.44977 4.42462 4.47805 4.73058 4.94121 5.08011 5.14497 5.29218 5.42249 5.49650 5.61007 5.69020 5.76480 5.85382 5.92028 5.98151 6.08811 6.17057 6.21181 6.25458 6.28179 6.34626 6.37558 6.45725 6.49977 6.60279 6.64034 6.76615 6.89493 7.04608 7.15908 7.27745 7.34032 7.74611 7.88454 8.01964 8.14213 8.28596 8.38388 8.65323 9.10830 9.63441 11.07170 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.006375 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.966894 B = 4391.068945 C = 5195.964874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.105 3.895 3 H 0.123 0.877 4 C -0.103 4.103 5 C -0.076 4.076 6 H 0.104 0.896 7 C 0.482 3.518 8 O -0.520 6.520 9 O -0.516 6.516 10 C -0.094 4.094 11 C 0.113 3.887 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.553 5.553 15 C 0.127 3.873 16 C 0.021 3.979 17 C -0.451 4.451 18 H 0.076 0.924 19 C 0.053 3.947 20 N -0.883 5.883 21 Si 0.889 3.111 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.273 1.273 25 C -0.191 4.191 26 C -0.191 4.191 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.405 0.595 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.016 0.984 40 H 0.256 0.744 41 H 0.103 0.897 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -11.365 -6.478 13.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.003 4.003 3 H 0.140 0.860 4 C -0.141 4.141 5 C -0.095 4.095 6 H 0.122 0.878 7 C 0.325 3.675 8 O -0.408 6.408 9 O -0.327 6.327 10 C -0.132 4.132 11 C 0.004 3.996 12 H 0.088 0.912 13 C -0.248 4.248 14 N -0.276 5.276 15 C 0.001 3.999 16 C 0.020 3.980 17 C -0.489 4.489 18 H 0.094 0.906 19 C -0.147 4.147 20 N -0.522 5.522 21 Si 0.718 3.282 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.198 1.198 25 C -0.229 4.229 26 C -0.229 4.229 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.637 -11.076 -6.114 12.923 hybrid contribution 0.064 -0.121 -1.039 1.048 sum -2.573 -11.196 -7.153 13.533 Atomic orbital electron populations 1.22783 0.98814 1.00359 1.02993 1.21160 0.91267 1.01870 0.85995 0.85954 1.21649 1.02821 0.90407 0.99236 1.21072 1.01575 0.98465 0.88426 0.87819 1.23939 0.80327 0.77794 0.85450 1.90691 1.27768 1.34728 1.87636 1.84580 1.61148 1.69535 1.17468 1.21464 1.00152 0.99695 0.91914 1.20968 0.95691 0.86766 0.96127 0.91182 1.22702 0.99932 1.00277 1.01893 1.56688 1.62692 1.05447 1.02812 1.21306 0.94285 0.95149 0.89149 1.19040 0.93272 0.87167 0.98489 1.20686 1.03307 0.90556 1.34344 0.90595 1.25055 0.96332 0.97413 0.95947 1.70028 1.36269 1.02867 1.43011 0.86614 0.83142 0.78539 0.79945 1.20973 1.21636 1.19803 1.22857 0.93728 1.04075 1.02234 1.22921 1.05463 1.04570 0.89983 0.90419 0.93188 0.94472 0.91068 0.90665 0.73738 0.90438 0.91201 0.92763 0.92966 0.92332 0.92632 0.96639 0.93408 0.87921 0.94045 0.94471 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.37 37.16 0.31 -2.77 16 2 C 0.10 1.80 2.00 -69.15 -0.14 1.67 16 3 H 0.12 2.59 5.51 -50.73 -0.28 2.31 16 4 C -0.10 -1.53 4.67 -27.06 -0.13 -1.66 16 5 C -0.08 -1.01 2.53 -91.74 -0.23 -1.24 16 6 H 0.10 1.28 6.74 -52.08 -0.35 0.93 16 7 C 0.48 6.36 7.61 36.14 0.28 6.64 16 8 O -0.52 -8.17 16.70 -18.75 -0.31 -8.48 16 9 O -0.52 -5.45 13.37 -39.24 -0.52 -5.98 16 10 C -0.09 -1.30 4.04 -27.07 -0.11 -1.41 16 11 C 0.11 1.67 2.58 -69.16 -0.18 1.49 16 12 H 0.07 1.05 8.29 -50.73 -0.42 0.63 16 13 C -0.19 -2.47 8.45 37.17 0.31 -2.15 16 14 N -0.55 -9.75 3.16 -220.86 -0.70 -10.45 16 15 C 0.13 2.47 3.80 -3.83 -0.01 2.45 16 16 C 0.02 0.48 1.51 -155.66 -0.24 0.25 16 17 C -0.45 -11.39 6.62 -34.44 -0.23 -11.62 16 18 H 0.08 1.95 7.15 -52.49 -0.38 1.57 16 19 C 0.05 1.37 5.25 -17.82 -0.09 1.28 16 20 N -0.88 -23.72 8.62 55.43 0.48 -23.24 16 21 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.19 -4.44 8.01 -26.73 -0.21 -4.66 16 26 C -0.19 -4.57 9.38 -26.73 -0.25 -4.82 16 27 H 0.08 1.40 3.48 -51.93 -0.18 1.22 16 28 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 29 H 0.04 0.54 5.21 -51.93 -0.27 0.27 16 30 H 0.07 1.12 8.16 -51.78 -0.42 0.70 16 31 H 0.07 1.03 8.00 -51.78 -0.41 0.62 16 32 H 0.40 2.48 9.10 45.56 0.41 2.90 16 33 H 0.08 1.17 8.06 -51.78 -0.42 0.75 16 34 H 0.07 0.89 7.97 -51.78 -0.41 0.48 16 35 H 0.05 0.71 5.23 -51.93 -0.27 0.44 16 36 H 0.05 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.06 0.80 6.81 -51.93 -0.35 0.44 16 38 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.02 0.29 5.67 -51.93 -0.29 0.00 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.10 2.67 6.41 -51.93 -0.33 2.33 16 42 H 0.04 0.89 6.54 -51.93 -0.34 0.55 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.11 3.06 6.16 -51.93 -0.32 2.74 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -27.96 322.70 -7.99 -35.95 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.86 Total: 8.25 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.92 Total: -16.55 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: -0.22 Total: -33.69 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.84 Total: -14.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.96 -7.99 -35.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604654748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.792 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds