Wall clock time and date at job start Tue Mar 31 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47444 * 29.99805 * 4 3 2 6 6 C 1.53006 * 109.47213 * 150.00082 * 4 3 2 7 7 C 1.50694 * 109.46840 * 294.99979 * 6 4 3 8 8 O 1.21276 * 120.00379 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99559 * 179.97438 * 7 6 4 10 10 C 1.46492 * 120.00127 * 0.02562 * 9 7 6 11 11 C 1.46504 * 119.99692 * 180.02562 * 9 7 6 12 12 C 1.50698 * 109.47134 * 90.00187 * 11 9 7 13 13 H 1.07999 * 120.00239 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99880 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00188 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99917 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47047 * 60.00202 * 16 14 12 18 18 H 1.48499 * 109.47017 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46993 * 300.00128 * 16 14 12 20 20 C 1.50700 * 109.47377 * 270.00006 * 4 3 2 21 21 C 1.30529 * 124.45074 * 125.02134 * 20 4 3 22 22 C 1.51107 * 111.10476 * 179.97438 * 21 20 4 23 23 C 1.54630 * 104.72536 * 16.44292 * 22 21 20 24 24 C 1.51104 * 124.44706 * 304.72614 * 20 4 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 30 30 H 1.09000 * 109.46614 * 55.00101 * 6 4 3 31 31 H 1.09002 * 109.47166 * 174.99410 * 6 4 3 32 32 H 1.09002 * 109.47198 * 90.00100 * 10 9 7 33 33 H 1.09005 * 109.46945 * 209.99999 * 10 9 7 34 34 H 1.09002 * 109.47584 * 329.99623 * 10 9 7 35 35 H 1.09004 * 109.46800 * 210.00426 * 11 9 7 36 36 H 1.09001 * 109.47324 * 330.00353 * 11 9 7 37 37 H 0.97001 * 119.99951 * 179.97438 * 15 14 12 38 38 H 1.07996 * 124.44520 * 359.96595 * 21 20 4 39 39 H 1.09001 * 110.37850 * 135.24978 * 22 21 20 40 40 H 1.08991 * 110.39015 * 257.62798 * 22 21 20 41 41 H 1.09001 * 111.03925 * 93.39328 * 23 22 21 42 42 H 1.08999 * 111.03637 * 217.33059 * 23 22 21 43 43 H 1.08998 * 110.39097 * 282.39639 * 24 20 4 44 44 H 1.09005 * 110.38654 * 44.77521 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.8403 2.7459 -0.7218 7 6 3.4470 2.6545 -2.1737 8 8 2.8941 1.6589 -2.5906 9 7 3.7097 3.6792 -3.0088 10 6 4.3780 4.8816 -2.5052 11 6 3.3269 3.5906 -4.4201 12 6 1.9325 4.1339 -4.5975 13 1 1.3862 4.5083 -3.7443 14 6 1.3545 4.1541 -5.8491 15 7 2.0198 3.6987 -6.8881 16 14 -0.3737 4.8282 -6.0691 17 1 -0.4104 6.2476 -5.6341 18 1 -0.7617 4.7382 -7.4996 19 1 -1.3229 4.0342 -5.2482 20 6 3.9322 1.4996 1.4200 21 6 4.8280 0.6863 1.9097 22 6 5.1070 0.9950 3.3624 23 6 3.9200 1.8786 3.8114 24 6 3.4687 2.4901 2.4628 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.3371 3.5965 -0.2619 31 1 4.9196 2.8775 -0.6452 32 1 5.4575 4.7649 -2.6021 33 1 4.0528 5.7470 -3.0829 34 1 4.1211 5.0279 -1.4561 35 1 4.0234 4.1735 -5.0228 36 1 3.3541 2.5487 -4.7393 37 1 1.6130 3.7126 -7.7686 38 1 5.3067 -0.1037 1.3502 39 1 5.1381 0.0754 3.9467 40 1 6.0452 1.5407 3.4612 41 1 3.1288 1.2747 4.2558 42 1 4.2499 2.6564 4.5000 43 1 3.9433 3.4584 2.3044 44 1 2.3835 2.5893 2.4364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073050903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:31 Heat of formation + Delta-G solvation = -75.505051 kcal Electronic energy + Delta-G solvation = -22792.967496 eV Core-core repulsion = 19517.452053 eV Total energy + Delta-G solvation = -3275.515443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61621 -38.46525 -37.08518 -34.67465 -32.80709 -32.33671 -30.12993 -29.10724 -28.23978 -27.32136 -25.63907 -23.70830 -22.54455 -22.03434 -20.78966 -18.43426 -18.16971 -16.73038 -16.57372 -16.34478 -15.62365 -15.37765 -15.18721 -14.69716 -14.40630 -14.28824 -13.56960 -13.00316 -12.85798 -12.68720 -12.31735 -12.26259 -12.11149 -12.05109 -11.75854 -11.72596 -11.48946 -11.38917 -11.31553 -11.16993 -11.09916 -10.96041 -10.83651 -10.55318 -10.44630 -10.10019 -9.57656 -9.27980 -8.91984 -8.70438 -8.38017 -7.54966 -5.98920 -4.03095 2.06408 3.35727 3.39630 3.42975 3.56342 3.89879 4.12343 4.47446 4.51665 4.55784 4.90014 5.01695 5.20291 5.21694 5.30360 5.33573 5.35440 5.49888 5.54504 5.58449 5.62116 5.63943 5.71526 5.74366 5.77888 5.86028 5.94415 5.95832 6.02738 6.06864 6.10907 6.21891 6.27050 6.36643 6.47647 6.78259 7.12450 7.50130 7.56312 7.62766 7.98157 8.30249 8.51358 8.97216 9.20871 9.61835 11.09116 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.004319 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.375467 B = 6482.049110 C = 7136.651466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.065 3.935 3 O -0.362 6.362 4 C 0.157 3.843 5 H 0.072 0.928 6 C -0.134 4.134 7 C 0.508 3.492 8 O -0.535 6.535 9 N -0.606 5.606 10 C 0.084 3.916 11 C 0.246 3.754 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.897 5.897 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.146 4.146 21 C -0.167 4.167 22 C -0.097 4.097 23 C -0.125 4.125 24 C -0.090 4.090 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -3.411 19.806 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.281 6.281 4 C 0.098 3.902 5 H 0.090 0.910 6 C -0.175 4.175 7 C 0.294 3.706 8 O -0.412 6.412 9 N -0.339 5.339 10 C -0.060 4.060 11 C 0.127 3.873 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.536 5.536 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.147 4.147 21 C -0.185 4.185 22 C -0.134 4.134 23 C -0.163 4.163 24 C -0.127 4.127 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.576 -3.792 19.354 20.495 hybrid contribution -0.701 0.292 -0.247 0.799 sum 4.875 -3.500 19.107 20.028 Atomic orbital electron populations 1.21704 0.94189 1.01675 1.03036 1.22373 0.95242 0.84103 0.99454 1.87935 1.19333 1.26212 1.94595 1.20360 0.82503 0.97836 0.89497 0.91017 1.21804 1.02222 0.99027 0.94399 1.20154 0.79677 0.83658 0.87099 1.90646 1.41811 1.31281 1.77452 1.48142 1.58086 1.15401 1.12258 1.21618 0.96008 0.89283 0.99107 1.19246 0.95140 0.98684 0.74210 1.21420 1.00208 1.40960 0.93635 0.92519 1.24930 0.97954 0.95468 0.95772 1.69927 1.37646 1.46584 0.99465 0.86570 0.84649 0.79341 0.76931 1.20274 1.21225 1.20169 1.22623 0.98031 0.97484 0.96548 1.23168 0.99129 0.99554 0.96646 1.21311 0.98710 0.99596 0.93751 1.22479 0.97811 0.98943 0.97040 1.21243 1.01818 0.97608 0.92001 0.91636 0.92471 0.91397 0.94456 0.92900 0.88672 0.88635 0.93912 0.90888 0.92509 0.95185 0.93952 0.92750 0.86006 0.91431 0.90844 0.91295 0.91144 0.90702 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 37.16 0.38 -1.67 16 2 C 0.06 0.99 6.46 37.16 0.24 1.23 16 3 O -0.36 -6.30 9.19 -49.64 -0.46 -6.76 16 4 C 0.16 2.40 2.05 -27.88 -0.06 2.34 16 5 H 0.07 1.15 7.52 -51.93 -0.39 0.76 16 6 C -0.13 -2.10 3.91 -27.88 -0.11 -2.21 16 7 C 0.51 10.89 7.55 -10.99 -0.08 10.81 16 8 O -0.53 -13.67 15.00 -8.84 -0.13 -13.81 16 9 N -0.61 -13.28 2.86 -182.96 -0.52 -13.80 16 10 C 0.08 1.37 10.24 59.84 0.61 1.98 16 11 C 0.25 6.63 5.16 -5.19 -0.03 6.61 16 12 C -0.52 -15.27 9.39 -34.44 -0.32 -15.59 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 16 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.15 -1.79 5.03 -100.74 -0.51 -2.30 16 21 C -0.17 -1.79 10.55 -35.70 -0.38 -2.16 16 22 C -0.10 -0.84 6.81 -26.83 -0.18 -1.02 16 23 C -0.13 -1.10 7.20 -24.92 -0.18 -1.28 16 24 C -0.09 -0.97 6.70 -26.74 -0.18 -1.15 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.09 1.40 7.40 -51.93 -0.38 1.02 16 31 H 0.10 1.23 8.11 -51.93 -0.42 0.81 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -33.91 362.84 -8.61 -42.51 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.79 Total: -1.78 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.89 Total: -2.75 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.21 Total: -40.23 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.59 Total: -20.57 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.91 -8.61 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073050903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.993 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds