Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47444 * 29.99805 * 4 3 2 6 6 C 1.53006 * 109.47213 * 150.00082 * 4 3 2 7 7 C 1.50694 * 109.46840 * 294.99979 * 6 4 3 8 8 O 1.21276 * 120.00379 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99559 * 179.97438 * 7 6 4 10 10 C 1.46492 * 120.00127 * 0.02562 * 9 7 6 11 11 C 1.46504 * 119.99692 * 180.02562 * 9 7 6 12 12 C 1.50698 * 109.47134 * 90.00187 * 11 9 7 13 13 H 1.07999 * 120.00239 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99880 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00188 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99917 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47047 * 60.00202 * 16 14 12 18 18 H 1.48499 * 109.47017 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46993 * 300.00128 * 16 14 12 20 20 C 1.50700 * 109.47377 * 270.00006 * 4 3 2 21 21 C 1.30529 * 124.45074 * 125.02134 * 20 4 3 22 22 C 1.51107 * 111.10476 * 179.97438 * 21 20 4 23 23 C 1.54630 * 104.72536 * 16.44292 * 22 21 20 24 24 C 1.51104 * 124.44706 * 304.72614 * 20 4 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 30 30 H 1.09000 * 109.46614 * 55.00101 * 6 4 3 31 31 H 1.09002 * 109.47166 * 174.99410 * 6 4 3 32 32 H 1.09002 * 109.47198 * 90.00100 * 10 9 7 33 33 H 1.09005 * 109.46945 * 209.99999 * 10 9 7 34 34 H 1.09002 * 109.47584 * 329.99623 * 10 9 7 35 35 H 1.09004 * 109.46800 * 210.00426 * 11 9 7 36 36 H 1.09001 * 109.47324 * 330.00353 * 11 9 7 37 37 H 0.97001 * 119.99951 * 179.97438 * 15 14 12 38 38 H 1.07996 * 124.44520 * 359.96595 * 21 20 4 39 39 H 1.09001 * 110.37850 * 135.24978 * 22 21 20 40 40 H 1.08991 * 110.39015 * 257.62798 * 22 21 20 41 41 H 1.09001 * 111.03925 * 93.39328 * 23 22 21 42 42 H 1.08999 * 111.03637 * 217.33059 * 23 22 21 43 43 H 1.08998 * 110.39097 * 282.39639 * 24 20 4 44 44 H 1.09005 * 110.38654 * 44.77521 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.8403 2.7459 -0.7218 7 6 3.4470 2.6545 -2.1737 8 8 2.8941 1.6589 -2.5906 9 7 3.7097 3.6792 -3.0088 10 6 4.3780 4.8816 -2.5052 11 6 3.3269 3.5906 -4.4201 12 6 1.9325 4.1339 -4.5975 13 1 1.3862 4.5083 -3.7443 14 6 1.3545 4.1541 -5.8491 15 7 2.0198 3.6987 -6.8881 16 14 -0.3737 4.8282 -6.0691 17 1 -0.4104 6.2476 -5.6341 18 1 -0.7617 4.7382 -7.4996 19 1 -1.3229 4.0342 -5.2482 20 6 3.9322 1.4996 1.4200 21 6 4.8280 0.6863 1.9097 22 6 5.1070 0.9950 3.3624 23 6 3.9200 1.8786 3.8114 24 6 3.4687 2.4901 2.4628 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.3371 3.5965 -0.2619 31 1 4.9196 2.8775 -0.6452 32 1 5.4575 4.7649 -2.6021 33 1 4.0528 5.7470 -3.0829 34 1 4.1211 5.0279 -1.4561 35 1 4.0234 4.1735 -5.0228 36 1 3.3541 2.5487 -4.7393 37 1 1.6130 3.7126 -7.7686 38 1 5.3067 -0.1037 1.3502 39 1 5.1381 0.0754 3.9467 40 1 6.0452 1.5407 3.4612 41 1 3.1288 1.2747 4.2558 42 1 4.2499 2.6564 4.5000 43 1 3.9433 3.4584 2.3044 44 1 2.3835 2.5893 2.4364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073050903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -95.588364 kcal Electronic energy + Delta-G solvation = -22793.838374 eV Core-core repulsion = 19517.452053 eV Total energy + Delta-G solvation = -3276.386321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95656 -39.75907 -38.20105 -36.51022 -34.76964 -33.74264 -31.37059 -30.33732 -29.38480 -28.66543 -27.23669 -25.37955 -23.72853 -23.60382 -21.57388 -19.94704 -19.28056 -18.69568 -17.86091 -17.80448 -17.12656 -16.78717 -16.41983 -16.07774 -16.02551 -15.59881 -14.97793 -14.45726 -14.27584 -13.86335 -13.67314 -13.53053 -13.44341 -13.30775 -13.18925 -13.06309 -12.86746 -12.71137 -12.60688 -12.53164 -12.38534 -12.19223 -12.03534 -12.00708 -11.87669 -11.73326 -11.64061 -10.64974 -10.57794 -10.44331 -9.67491 -9.38314 -8.22645 -6.37480 1.18419 1.34699 1.39519 1.46820 1.90131 2.33077 2.47695 2.82829 3.06273 3.56093 3.72658 3.88610 4.03715 4.13819 4.15881 4.26717 4.34796 4.35600 4.46976 4.51595 4.53380 4.58183 4.72487 4.79287 4.85159 4.91938 4.96041 4.96550 5.02709 5.04351 5.07020 5.10401 5.21873 5.23136 5.26070 5.42922 5.56566 5.63074 5.86003 5.90201 6.07029 6.38336 6.69889 6.82239 7.28602 7.53605 8.84058 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.004319 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.375467 B = 6482.049110 C = 7136.651466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 O -0.388 6.388 4 C 0.155 3.845 5 H 0.053 0.947 6 C -0.119 4.119 7 C 0.496 3.504 8 O -0.589 6.589 9 N -0.615 5.615 10 C 0.078 3.922 11 C 0.261 3.739 12 C -0.543 4.543 13 H 0.050 0.950 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.966 3.034 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.280 1.280 20 C -0.165 4.165 21 C -0.153 4.153 22 C -0.095 4.095 23 C -0.121 4.121 24 C -0.089 4.089 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.023 0.977 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 -2.360 22.542 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.013 4.013 3 O -0.308 6.308 4 C 0.097 3.903 5 H 0.071 0.929 6 C -0.158 4.158 7 C 0.285 3.715 8 O -0.469 6.469 9 N -0.347 5.347 10 C -0.064 4.064 11 C 0.139 3.861 12 C -0.581 4.581 13 H 0.068 0.932 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.790 3.210 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.205 1.205 20 C -0.166 4.166 21 C -0.171 4.171 22 C -0.132 4.132 23 C -0.158 4.158 24 C -0.126 4.126 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.041 0.959 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.050 -2.705 22.122 23.094 hybrid contribution -0.765 -0.095 -1.111 1.353 sum 5.285 -2.800 21.011 21.846 Atomic orbital electron populations 1.21711 0.93247 1.03122 1.02079 1.22443 0.96073 0.83475 0.99303 1.87885 1.20775 1.27300 1.94840 1.20384 0.81598 0.96805 0.91508 0.92881 1.21810 1.04391 1.00041 0.89567 1.21240 0.78490 0.82514 0.89265 1.90616 1.44137 1.33328 1.78838 1.48195 1.58402 1.17607 1.10458 1.21924 0.97235 0.86496 1.00712 1.18708 0.94466 0.95380 0.77514 1.21674 1.01301 1.41388 0.93747 0.93203 1.25852 1.02334 0.95541 0.95371 1.70043 1.39551 1.47270 0.99993 0.85491 0.78924 0.79290 0.77251 1.18370 1.20076 1.20542 1.22377 0.99544 0.99509 0.95128 1.23460 0.97548 0.98297 0.97841 1.21367 0.99284 1.00418 0.92096 1.22488 0.97776 0.99346 0.96183 1.21262 1.00899 0.97837 0.92649 0.89059 0.91220 0.94370 0.92145 0.95349 0.87072 0.85145 0.90949 0.91730 0.88975 0.95920 0.98612 0.92383 0.85720 0.90122 0.89317 0.91330 0.89312 0.89785 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 10.28 71.98 0.74 -3.27 16 2 C 0.06 1.97 6.46 71.98 0.46 2.44 16 3 O -0.39 -13.76 9.19 -135.21 -1.24 -15.00 16 4 C 0.16 4.70 2.05 29.85 0.06 4.76 16 5 H 0.05 1.76 7.52 -2.39 -0.02 1.74 16 6 C -0.12 -3.56 3.91 29.85 0.12 -3.45 16 7 C 0.50 21.69 7.55 87.65 0.66 22.35 16 8 O -0.59 -31.79 15.00 10.76 0.16 -31.62 16 9 N -0.61 -27.29 2.86 -851.13 -2.43 -29.72 16 10 C 0.08 2.42 10.24 127.77 1.31 3.73 16 11 C 0.26 14.67 5.16 85.63 0.44 15.11 16 12 C -0.54 -32.58 9.39 25.60 0.24 -32.34 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 14 C 0.01 0.47 5.46 84.66 0.46 0.93 16 15 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 16 Si 0.97 46.32 29.54 68.60 2.03 48.35 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 C -0.17 -3.73 5.03 -15.87 -0.08 -3.81 16 21 C -0.15 -2.89 10.55 26.26 0.28 -2.61 16 22 C -0.09 -1.30 6.81 30.53 0.21 -1.09 16 23 C -0.12 -1.71 7.20 31.76 0.23 -1.48 16 24 C -0.09 -1.71 6.70 30.59 0.21 -1.50 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.03 1.00 8.08 -2.39 -0.02 0.98 16 30 H 0.11 3.01 7.40 -2.39 -0.02 3.00 16 31 H 0.13 2.98 8.11 -2.39 -0.02 2.97 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 2.11 8.07 -2.38 -0.02 2.09 16 34 H 0.09 2.19 6.44 -2.39 -0.02 2.17 16 35 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 36 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.12 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -77.69 362.84 5.08 -72.61 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.94 Total: 12.97 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.34 Total: -0.23 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -2.15 Total: -87.08 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.08 Total: -46.62 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -77.69 5.08 -72.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073050903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.974 kcal (2) G-P(sol) polarization free energy of solvation -77.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds