Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47039 * 2 1 4 4 C 1.42899 * 114.00079 * 175.73619 * 3 2 1 5 5 H 1.09002 * 109.47118 * 325.01708 * 4 3 2 6 6 C 1.52995 * 109.47556 * 205.00894 * 4 3 2 7 7 C 1.50700 * 109.46898 * 65.51895 * 6 4 3 8 8 O 1.21281 * 120.00100 * 5.62760 * 7 6 4 9 9 N 1.34781 * 120.00194 * 185.62199 * 7 6 4 10 10 C 1.46496 * 119.99784 * 359.97438 * 9 7 6 11 11 C 1.46495 * 120.00238 * 180.02562 * 9 7 6 12 12 C 1.50699 * 109.47301 * 89.99890 * 11 9 7 13 13 H 1.08001 * 119.99943 * 359.97438 * 12 11 9 14 14 C 1.37877 * 120.00493 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99739 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00487 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46743 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46791 * 119.99592 * 16 14 12 19 19 H 1.48494 * 109.46894 * 240.00071 * 16 14 12 20 20 C 1.50703 * 109.47051 * 85.01235 * 4 3 2 21 21 C 1.30526 * 124.44750 * 235.02946 * 20 4 3 22 22 C 1.51102 * 111.10493 * 179.97438 * 21 20 4 23 23 C 1.54634 * 104.72604 * 16.43371 * 22 21 20 24 24 C 1.51106 * 124.44587 * 54.71801 * 20 4 3 25 25 H 1.09001 * 109.47112 * 299.99135 * 1 2 3 26 26 H 1.09006 * 109.47650 * 59.99569 * 1 2 3 27 27 H 1.09003 * 109.47413 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47379 * 120.00922 * 2 1 3 29 29 H 1.09001 * 109.47112 * 240.00865 * 2 1 3 30 30 H 1.08998 * 109.47635 * 185.51909 * 6 4 3 31 31 H 1.08996 * 109.47438 * 305.52341 * 6 4 3 32 32 H 1.09006 * 109.46942 * 90.00053 * 10 9 7 33 33 H 1.08994 * 109.47568 * 209.99824 * 10 9 7 34 34 H 1.08997 * 109.47420 * 330.00366 * 10 9 7 35 35 H 1.08994 * 109.47252 * 210.00275 * 11 9 7 36 36 H 1.08999 * 109.47211 * 330.00022 * 11 9 7 37 37 H 0.96993 * 120.00272 * 179.97438 * 15 14 12 38 38 H 1.07993 * 124.45151 * 359.97438 * 21 20 4 39 39 H 1.09001 * 110.39232 * 135.24748 * 22 21 20 40 40 H 1.08997 * 110.38945 * 257.62619 * 22 21 20 41 41 H 1.08998 * 111.04086 * 93.39612 * 23 22 21 42 42 H 1.09003 * 111.04115 * 217.29745 * 23 22 21 43 43 H 1.08996 * 110.38974 * 282.39941 * 24 20 4 44 44 H 1.08996 * 110.38562 * 44.78518 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4613 0.0971 5 1 3.8130 0.6659 0.7348 6 6 3.7901 2.8198 0.7003 7 6 3.2979 2.8851 2.1231 8 8 2.8060 1.9045 2.6403 9 7 3.4043 4.0332 2.8211 10 6 3.9990 5.2174 2.1967 11 6 2.9264 4.0965 4.2044 12 6 4.0454 3.7186 5.1404 13 1 5.0155 3.4570 4.7443 14 6 3.8306 3.7058 6.5022 15 7 2.6491 4.0238 6.9846 16 14 5.2179 3.2381 7.6625 17 1 6.4377 2.9262 6.8750 18 1 5.4976 4.3705 8.5814 19 1 4.8212 2.0453 8.4529 20 6 4.0358 1.3433 -1.2766 21 6 4.9596 0.4810 -1.6033 22 6 5.3500 0.6260 -3.0558 23 6 4.8052 2.0118 -3.4729 24 6 3.6516 2.2031 -2.4584 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 4.8724 2.9473 0.6841 31 1 3.3220 3.6129 0.1173 32 1 3.2189 5.8006 1.7073 33 1 4.4829 5.8265 2.9602 34 1 4.7377 4.9065 1.4579 35 1 2.5926 5.1098 4.4275 36 1 2.0950 3.4035 4.3337 37 1 2.4978 4.0145 7.9426 38 1 5.3887 -0.2412 -0.9247 39 1 6.4344 0.5966 -3.1625 40 1 4.8874 -0.1593 -3.6536 41 1 5.5664 2.7831 -3.3554 42 1 4.4258 1.9919 -4.4945 43 1 2.7077 1.8631 -2.8844 44 1 3.5797 3.2488 -2.1596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073050905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = -76.095251 kcal Electronic energy + Delta-G solvation = -22713.443919 eV Core-core repulsion = 19437.902882 eV Total energy + Delta-G solvation = -3275.541036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.63805 -38.46864 -37.13037 -34.68222 -32.81772 -32.35640 -30.17425 -29.14062 -28.24927 -27.33387 -25.64531 -23.72050 -22.59270 -22.01680 -20.83202 -18.47208 -18.17920 -16.72054 -16.51816 -16.41604 -15.69925 -15.43746 -15.15542 -14.70776 -14.40106 -14.28396 -13.70334 -12.99752 -12.83795 -12.73811 -12.40290 -12.19904 -12.12492 -11.96232 -11.80965 -11.75972 -11.56798 -11.51985 -11.29481 -11.17078 -11.13878 -10.95623 -10.81326 -10.59884 -10.47992 -10.12459 -9.56093 -9.34447 -8.92655 -8.70870 -8.40520 -7.54641 -6.00780 -4.05382 2.05955 3.31200 3.38381 3.42229 3.56912 3.87703 4.08456 4.45540 4.49643 4.54563 4.88667 5.01871 5.19840 5.22442 5.26538 5.31081 5.33524 5.44891 5.54490 5.57524 5.59963 5.63662 5.64780 5.72936 5.79634 5.83094 5.89759 5.95965 6.02320 6.03172 6.09823 6.15459 6.26455 6.28157 6.46469 6.77382 7.12965 7.49289 7.52661 7.62443 7.96412 8.28425 8.51576 8.95450 9.20544 9.59762 11.07252 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.004158 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.457485 B = 6732.782512 C = 7237.235575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.365 6.365 4 C 0.156 3.844 5 H 0.074 0.926 6 C -0.132 4.132 7 C 0.509 3.491 8 O -0.537 6.537 9 N -0.606 5.606 10 C 0.085 3.915 11 C 0.245 3.755 12 C -0.524 4.524 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.150 4.150 21 C -0.165 4.165 22 C -0.097 4.097 23 C -0.126 4.126 24 C -0.086 4.086 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -3.692 -20.656 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.098 3.902 5 H 0.092 0.908 6 C -0.172 4.172 7 C 0.295 3.705 8 O -0.414 6.414 9 N -0.338 5.338 10 C -0.060 4.060 11 C 0.126 3.874 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.151 4.151 21 C -0.183 4.183 22 C -0.134 4.134 23 C -0.164 4.164 24 C -0.123 4.123 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.327 -4.006 -20.204 20.728 hybrid contribution 1.003 -0.375 0.786 1.329 sum 3.331 -4.381 -19.418 20.183 Atomic orbital electron populations 1.21709 0.94165 1.01727 1.02981 1.22373 0.95223 0.84155 0.99579 1.87912 1.19979 1.26210 1.94321 1.20409 0.81764 0.97641 0.90412 0.90775 1.21757 1.02317 0.97965 0.95200 1.20141 0.79818 0.83475 0.87031 1.90647 1.44825 1.34929 1.70982 1.48127 1.60092 1.09928 1.15685 1.21611 0.97201 0.88941 0.98206 1.19256 0.95743 0.97744 0.74638 1.21490 0.97584 1.46082 0.91127 0.92493 1.24943 0.95811 0.95274 0.98151 1.69948 1.21576 1.48745 1.13163 0.86455 0.82167 0.78127 0.80745 1.19846 1.20973 1.20905 1.22649 0.97782 0.98256 0.96404 1.23189 0.98871 0.99352 0.96856 1.21314 1.00821 0.97440 0.93827 1.22500 0.97995 0.97037 0.98839 1.21213 0.98433 0.99622 0.93022 0.91525 0.92391 0.91589 0.93025 0.94295 0.88308 0.88916 0.93845 0.90887 0.92588 0.95148 0.93862 0.92823 0.85930 0.91319 0.90937 0.91107 0.91193 0.90642 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 37.16 0.38 -1.50 16 2 C 0.06 0.91 6.47 37.16 0.24 1.15 16 3 O -0.37 -6.08 9.37 -45.70 -0.43 -6.51 16 4 C 0.16 2.39 2.05 -27.88 -0.06 2.33 16 5 H 0.07 1.24 7.42 -51.93 -0.39 0.85 16 6 C -0.13 -2.08 3.83 -27.89 -0.11 -2.19 16 7 C 0.51 10.97 7.52 -10.98 -0.08 10.89 16 8 O -0.54 -13.80 15.10 -4.92 -0.07 -13.88 16 9 N -0.61 -13.33 2.86 -182.96 -0.52 -13.85 16 10 C 0.08 1.39 10.14 59.84 0.61 1.99 16 11 C 0.25 6.62 5.16 -5.20 -0.03 6.60 16 12 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 13 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 16 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 20 C -0.15 -1.84 4.89 -100.73 -0.49 -2.33 16 21 C -0.16 -1.80 10.55 -35.70 -0.38 -2.18 16 22 C -0.10 -0.85 6.81 -26.83 -0.18 -1.04 16 23 C -0.13 -1.08 7.20 -24.92 -0.18 -1.26 16 24 C -0.09 -0.90 6.71 -26.73 -0.18 -1.08 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.80 7.99 -51.93 -0.41 0.38 16 29 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.10 1.36 7.68 -51.93 -0.40 0.96 16 31 H 0.09 1.30 7.64 -51.93 -0.40 0.90 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.06 0.74 6.60 -51.93 -0.34 0.40 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -33.78 362.20 -8.49 -42.27 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.76 Total: -1.84 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.87 Total: -2.45 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.21 Total: -40.16 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.50 Total: -20.38 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.78 -8.49 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073050905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.830 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds