Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53000 * 109.46922 * 149.99499 * 4 3 2 7 7 C 1.50694 * 109.47623 * 294.99734 * 6 4 3 8 8 O 1.21284 * 119.99823 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99997 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99895 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47266 * 325.00050 * 10 9 7 12 12 C 1.53002 * 109.47103 * 85.00306 * 10 9 7 13 13 C 1.50707 * 109.47099 * 205.00099 * 10 9 7 14 14 H 1.07998 * 119.99484 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99606 * 179.97438 * 13 10 9 16 16 N 1.31511 * 119.99457 * 180.02562 * 15 13 10 17 17 Si 1.86794 * 120.00459 * 0.02562 * 15 13 10 18 18 H 1.48507 * 109.47387 * 89.99625 * 17 15 13 19 19 H 1.48504 * 109.47181 * 209.99508 * 17 15 13 20 20 H 1.48500 * 109.46936 * 329.99781 * 17 15 13 21 21 C 1.50696 * 109.46904 * 269.99781 * 4 3 2 22 22 C 1.30526 * 124.44422 * 125.02373 * 21 4 3 23 23 C 1.51104 * 111.10360 * 179.97438 * 22 21 4 24 24 C 1.54638 * 104.72392 * 16.43220 * 23 22 21 25 25 C 1.51105 * 124.45088 * 304.72161 * 21 4 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.09000 * 109.47104 * 55.00874 * 6 4 3 32 32 H 1.09006 * 109.46821 * 174.99657 * 6 4 3 33 33 H 0.96999 * 120.00511 * 0.02562 * 9 7 6 34 34 H 1.08991 * 109.47209 * 60.00120 * 12 10 9 35 35 H 1.09003 * 109.46892 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.46971 * 299.99744 * 12 10 9 37 37 H 0.97007 * 120.00420 * 180.02562 * 16 15 13 38 38 H 1.08002 * 124.45324 * 359.95647 * 22 21 4 39 39 H 1.08999 * 110.39037 * 135.25021 * 23 22 21 40 40 H 1.09000 * 110.38713 * 257.63143 * 23 22 21 41 41 H 1.09002 * 111.03340 * 93.40296 * 24 23 22 42 42 H 1.08998 * 111.03661 * 217.33381 * 24 23 22 43 43 H 1.09002 * 110.38579 * 282.39782 * 25 21 4 44 44 H 1.09003 * 110.38120 * 44.77065 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.8403 2.7457 -0.7219 7 6 3.4472 2.6543 -2.1738 8 8 2.8935 1.6589 -2.5905 9 7 3.7099 3.6789 -3.0089 10 6 3.3271 3.5902 -4.4203 11 1 3.4398 2.5618 -4.7634 12 6 1.8690 4.0248 -4.5816 13 6 4.2138 4.4928 -5.2390 14 1 4.9855 5.0740 -4.7562 15 6 4.0405 4.5757 -6.6042 16 7 4.8146 5.3630 -7.3187 17 14 2.7062 3.5699 -7.4392 18 1 1.4469 4.3560 -7.4815 19 1 3.1294 3.2383 -8.8235 20 1 2.4813 2.3158 -6.6764 21 6 3.9322 1.4996 1.4200 22 6 4.8279 0.6862 1.9097 23 6 5.1069 0.9949 3.3623 24 6 3.9200 1.8787 3.8113 25 6 3.4687 2.4901 2.4628 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3373 3.5963 -0.2620 32 1 4.9197 2.8773 -0.6454 33 1 4.1523 4.4752 -2.6756 34 1 1.7564 5.0532 -4.2386 35 1 1.5841 3.9584 -5.6316 36 1 1.2277 3.3720 -3.9895 37 1 4.6925 5.4217 -8.2792 38 1 5.3067 -0.1039 1.3502 39 1 5.1381 0.0753 3.9468 40 1 6.0452 1.5406 3.4611 41 1 3.1288 1.2749 4.2557 42 1 4.2499 2.6565 4.4999 43 1 3.9435 3.4584 2.3043 44 1 2.3836 2.5894 2.4362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073057201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = -78.551832 kcal Electronic energy + Delta-G solvation = -22596.835601 eV Core-core repulsion = 19321.188039 eV Total energy + Delta-G solvation = -3275.647562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70613 -38.58113 -37.20852 -34.92191 -32.77068 -32.28776 -30.45311 -29.85288 -28.74290 -27.88078 -25.15155 -23.57389 -22.68794 -21.21070 -20.62922 -19.47228 -18.42302 -17.22030 -16.74568 -16.32278 -15.76888 -15.47240 -15.29252 -14.80873 -14.54415 -14.12815 -13.73413 -13.05477 -12.97326 -12.90884 -12.63493 -12.46113 -12.22348 -12.15088 -11.92222 -11.79415 -11.66482 -11.47381 -11.34738 -11.23143 -11.13812 -11.06475 -10.77948 -10.64116 -10.15207 -9.66773 -9.42546 -9.18635 -9.08299 -8.84883 -8.72446 -8.06623 -6.18554 -4.20579 2.00047 3.25569 3.35973 3.37255 3.42530 3.79322 4.05126 4.34261 4.45509 4.50796 4.85693 4.96839 5.08895 5.16565 5.17923 5.22937 5.25526 5.37805 5.48452 5.53587 5.55899 5.59340 5.68324 5.73189 5.77581 5.86854 5.88751 5.96319 6.04715 6.07444 6.19164 6.36771 6.39968 6.45127 6.62519 6.71850 6.91878 7.25296 7.36580 7.41916 7.58017 8.20593 8.59909 8.79473 9.04231 9.43165 10.93724 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.003950 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.334839 B = 7087.315216 C = 7847.057624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.364 6.364 4 C 0.158 3.842 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.507 3.493 8 O -0.550 6.550 9 N -0.705 5.705 10 C 0.237 3.763 11 H 0.047 0.953 12 C -0.160 4.160 13 C -0.534 4.534 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.262 1.262 21 C -0.150 4.150 22 C -0.164 4.164 23 C -0.098 4.098 24 C -0.125 4.125 25 C -0.089 4.089 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.394 0.606 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 -7.932 20.955 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.099 3.901 5 H 0.091 0.909 6 C -0.177 4.177 7 C 0.292 3.708 8 O -0.429 6.429 9 N -0.353 5.353 10 C 0.134 3.866 11 H 0.065 0.935 12 C -0.218 4.218 13 C -0.572 4.572 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.187 1.187 21 C -0.150 4.150 22 C -0.182 4.182 23 C -0.135 4.135 24 C -0.163 4.163 25 C -0.126 4.126 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.227 0.773 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.108 -8.403 20.444 22.321 hybrid contribution -0.216 -0.185 -0.484 0.561 sum -3.324 -8.588 19.960 21.982 Atomic orbital electron populations 1.21700 0.94211 1.01733 1.02887 1.22377 0.95156 0.84132 0.99602 1.87906 1.19527 1.26220 1.94649 1.20340 0.82301 0.97785 0.89647 0.90904 1.21782 1.02884 0.99288 0.93759 1.20327 0.79333 0.83672 0.87486 1.90632 1.42923 1.31478 1.77875 1.46175 1.59741 1.18431 1.10983 1.19060 0.91545 0.98366 0.77668 0.93533 1.22432 0.98986 1.00654 0.99734 1.21070 1.17668 1.26236 0.92194 0.90250 1.24835 0.95945 0.94765 0.97061 1.69873 1.38667 1.37657 1.06908 0.86863 0.81681 0.81589 0.78251 1.20331 1.22226 1.18692 1.22585 0.98286 0.97650 0.96474 1.23188 0.98867 0.99436 0.96684 1.21324 0.98792 0.99645 0.93702 1.22477 0.97802 0.98962 0.97041 1.21238 1.01719 0.97647 0.92018 0.92373 0.91673 0.91583 0.92945 0.94294 0.88459 0.88100 0.77281 0.92920 0.93636 0.94488 0.92339 0.85966 0.91383 0.90736 0.91309 0.91094 0.90640 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 2 C 0.06 0.86 6.46 37.16 0.24 1.10 16 3 O -0.36 -5.60 9.19 -49.65 -0.46 -6.05 16 4 C 0.16 2.19 2.05 -27.88 -0.06 2.13 16 5 H 0.07 1.08 7.52 -51.93 -0.39 0.68 16 6 C -0.14 -1.93 5.35 -27.89 -0.15 -2.08 16 7 C 0.51 9.68 7.67 -10.99 -0.08 9.60 16 8 O -0.55 -12.41 15.08 -8.87 -0.13 -12.54 16 9 N -0.71 -14.25 5.07 -54.93 -0.28 -14.53 16 10 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 11 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 12 C -0.16 -3.69 8.96 37.16 0.33 -3.36 16 13 C -0.53 -14.63 9.31 -34.44 -0.32 -14.95 16 14 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 15 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 16 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 17 Si 0.89 22.14 24.37 -169.99 -4.14 17.99 16 18 H -0.28 -6.69 6.87 56.52 0.39 -6.31 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 21 C -0.15 -1.70 5.03 -100.74 -0.51 -2.20 16 22 C -0.16 -1.66 10.55 -35.70 -0.38 -2.03 16 23 C -0.10 -0.81 6.81 -26.82 -0.18 -0.99 16 24 C -0.13 -1.03 7.20 -24.93 -0.18 -1.21 16 25 C -0.09 -0.89 6.70 -26.74 -0.18 -1.07 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -32.06 354.55 -7.84 -39.89 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.61 Total: 4.53 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.33 Total: -8.68 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.50 Total: -40.48 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.59 Total: -18.60 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.06 -7.84 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073057201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.658 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds