Wall clock time and date at job start Tue Mar 31 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53000 * 109.46922 * 149.99499 * 4 3 2 7 7 C 1.50694 * 109.47623 * 294.99734 * 6 4 3 8 8 O 1.21284 * 119.99823 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99997 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99895 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47266 * 325.00050 * 10 9 7 12 12 C 1.53002 * 109.47103 * 85.00306 * 10 9 7 13 13 C 1.50707 * 109.47099 * 205.00099 * 10 9 7 14 14 H 1.07998 * 119.99484 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99606 * 179.97438 * 13 10 9 16 16 N 1.31511 * 119.99457 * 180.02562 * 15 13 10 17 17 Si 1.86794 * 120.00459 * 0.02562 * 15 13 10 18 18 H 1.48507 * 109.47387 * 89.99625 * 17 15 13 19 19 H 1.48504 * 109.47181 * 209.99508 * 17 15 13 20 20 H 1.48500 * 109.46936 * 329.99781 * 17 15 13 21 21 C 1.50696 * 109.46904 * 269.99781 * 4 3 2 22 22 C 1.30526 * 124.44422 * 125.02373 * 21 4 3 23 23 C 1.51104 * 111.10360 * 179.97438 * 22 21 4 24 24 C 1.54638 * 104.72392 * 16.43220 * 23 22 21 25 25 C 1.51105 * 124.45088 * 304.72161 * 21 4 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.09000 * 109.47104 * 55.00874 * 6 4 3 32 32 H 1.09006 * 109.46821 * 174.99657 * 6 4 3 33 33 H 0.96999 * 120.00511 * 0.02562 * 9 7 6 34 34 H 1.08991 * 109.47209 * 60.00120 * 12 10 9 35 35 H 1.09003 * 109.46892 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.46971 * 299.99744 * 12 10 9 37 37 H 0.97007 * 120.00420 * 180.02562 * 16 15 13 38 38 H 1.08002 * 124.45324 * 359.95647 * 22 21 4 39 39 H 1.08999 * 110.39037 * 135.25021 * 23 22 21 40 40 H 1.09000 * 110.38713 * 257.63143 * 23 22 21 41 41 H 1.09002 * 111.03340 * 93.40296 * 24 23 22 42 42 H 1.08998 * 111.03661 * 217.33381 * 24 23 22 43 43 H 1.09002 * 110.38579 * 282.39782 * 25 21 4 44 44 H 1.09003 * 110.38120 * 44.77065 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.8403 2.7457 -0.7219 7 6 3.4472 2.6543 -2.1738 8 8 2.8935 1.6589 -2.5905 9 7 3.7099 3.6789 -3.0089 10 6 3.3271 3.5902 -4.4203 11 1 3.4398 2.5618 -4.7634 12 6 1.8690 4.0248 -4.5816 13 6 4.2138 4.4928 -5.2390 14 1 4.9855 5.0740 -4.7562 15 6 4.0405 4.5757 -6.6042 16 7 4.8146 5.3630 -7.3187 17 14 2.7062 3.5699 -7.4392 18 1 1.4469 4.3560 -7.4815 19 1 3.1294 3.2383 -8.8235 20 1 2.4813 2.3158 -6.6764 21 6 3.9322 1.4996 1.4200 22 6 4.8279 0.6862 1.9097 23 6 5.1069 0.9949 3.3623 24 6 3.9200 1.8787 3.8113 25 6 3.4687 2.4901 2.4628 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3373 3.5963 -0.2620 32 1 4.9197 2.8773 -0.6454 33 1 4.1523 4.4752 -2.6756 34 1 1.7564 5.0532 -4.2386 35 1 1.5841 3.9584 -5.6316 36 1 1.2277 3.3720 -3.9895 37 1 4.6925 5.4217 -8.2792 38 1 5.3067 -0.1039 1.3502 39 1 5.1381 0.0753 3.9468 40 1 6.0452 1.5406 3.4611 41 1 3.1288 1.2749 4.2557 42 1 4.2499 2.6565 4.4999 43 1 3.9435 3.4584 2.3043 44 1 2.3836 2.5894 2.4362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073057201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:33 Heat of formation + Delta-G solvation = -98.718787 kcal Electronic energy + Delta-G solvation = -22597.710105 eV Core-core repulsion = 19321.188039 eV Total energy + Delta-G solvation = -3276.522067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95612 -39.79720 -38.20932 -36.77278 -34.39689 -33.80728 -31.95657 -31.04779 -29.66335 -28.75750 -27.22579 -24.78789 -23.69338 -22.71701 -21.59243 -21.09805 -19.41921 -18.90818 -17.86073 -17.70142 -17.44580 -16.78787 -16.28579 -16.02602 -15.97082 -15.50814 -15.07942 -14.94976 -14.50681 -14.13481 -13.85263 -13.72623 -13.55033 -13.30563 -13.22782 -13.05787 -12.81281 -12.73374 -12.56534 -12.41529 -12.15029 -12.04136 -12.02706 -11.88490 -11.67401 -11.62235 -11.28098 -10.87945 -10.68925 -10.45598 -9.82868 -9.68197 -8.38877 -6.44345 1.17757 1.26244 1.34071 1.43958 1.84065 2.25390 2.48928 2.82159 2.97347 3.61417 3.73168 3.92402 4.08219 4.15244 4.18387 4.25723 4.37684 4.42823 4.47255 4.50175 4.53114 4.54294 4.63867 4.72167 4.80222 4.86720 4.91972 4.96317 5.00400 5.05009 5.06086 5.09564 5.23268 5.25363 5.32543 5.41843 5.43551 5.61736 5.68579 5.89842 6.14546 6.37213 6.57417 6.92046 7.19510 7.51228 8.76413 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.003950 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.334839 B = 7087.315216 C = 7847.057624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.062 3.938 3 O -0.385 6.385 4 C 0.157 3.843 5 H 0.056 0.944 6 C -0.126 4.126 7 C 0.503 3.497 8 O -0.587 6.587 9 N -0.705 5.705 10 C 0.243 3.757 11 H 0.020 0.980 12 C -0.153 4.153 13 C -0.533 4.533 14 H 0.058 0.942 15 C 0.029 3.971 16 N -0.933 5.933 17 Si 0.939 3.061 18 H -0.260 1.260 19 H -0.291 1.291 20 H -0.265 1.265 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.089 4.089 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.407 0.593 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.270 0.730 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 -8.288 23.103 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.015 4.015 3 O -0.304 6.304 4 C 0.099 3.901 5 H 0.074 0.926 6 C -0.165 4.165 7 C 0.291 3.709 8 O -0.468 6.468 9 N -0.354 5.354 10 C 0.138 3.862 11 H 0.038 0.962 12 C -0.211 4.211 13 C -0.571 4.571 14 H 0.076 0.924 15 C -0.170 4.170 16 N -0.572 5.572 17 Si 0.766 3.234 18 H -0.186 1.186 19 H -0.218 1.218 20 H -0.190 1.190 21 C -0.166 4.166 22 C -0.174 4.174 23 C -0.134 4.134 24 C -0.159 4.159 25 C -0.126 4.126 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.242 0.758 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.511 -8.745 22.624 24.508 hybrid contribution -0.010 -0.108 -1.108 1.113 sum -3.521 -8.852 21.517 23.532 Atomic orbital electron populations 1.21702 0.92993 1.03089 1.02284 1.22462 0.96187 0.83463 0.99366 1.87868 1.20444 1.27262 1.94836 1.20335 0.81749 0.96779 0.91236 0.92630 1.21804 1.04584 1.00404 0.89719 1.21181 0.78105 0.82403 0.89200 1.90617 1.44431 1.32766 1.78940 1.46044 1.60215 1.19591 1.09592 1.18714 0.91952 0.95945 0.79635 0.96208 1.22322 0.97836 1.01433 0.99520 1.21277 1.17368 1.25831 0.92595 0.92408 1.25541 0.97906 0.95728 0.97856 1.69973 1.40454 1.39380 1.07413 0.86008 0.79910 0.80218 0.77240 1.18601 1.21820 1.18989 1.22412 0.99506 0.99300 0.95391 1.23458 0.97628 0.98486 0.97790 1.21376 0.99270 1.00411 0.92300 1.22488 0.97753 0.99302 0.96314 1.21254 1.01056 0.97735 0.92556 0.91426 0.93685 0.89309 0.94989 0.92623 0.86567 0.85558 0.75790 0.91738 0.94208 0.93900 0.92038 0.85750 0.90156 0.89623 0.91170 0.89516 0.90006 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 10.28 71.98 0.74 -2.49 16 2 C 0.06 1.63 6.46 71.98 0.46 2.09 16 3 O -0.38 -11.65 9.19 -135.19 -1.24 -12.89 16 4 C 0.16 4.23 2.05 29.85 0.06 4.29 16 5 H 0.06 1.65 7.52 -2.39 -0.02 1.63 16 6 C -0.13 -3.35 5.35 29.85 0.16 -3.19 16 7 C 0.50 19.01 7.67 87.66 0.67 19.68 16 8 O -0.59 -26.71 15.08 10.75 0.16 -26.55 16 9 N -0.70 -28.16 5.07 -446.09 -2.26 -30.42 16 10 C 0.24 11.80 2.15 44.25 0.10 11.90 16 11 H 0.02 1.08 6.63 -2.39 -0.02 1.07 16 12 C -0.15 -6.91 8.96 71.98 0.65 -6.26 16 13 C -0.53 -29.44 9.31 25.60 0.24 -29.20 16 14 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 15 C 0.03 1.68 5.45 84.65 0.46 2.14 16 16 N -0.93 -56.34 13.96 21.45 0.30 -56.04 16 17 Si 0.94 45.54 24.37 68.60 1.67 47.22 16 18 H -0.26 -11.89 6.87 99.48 0.68 -11.21 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.26 -12.89 6.53 99.48 0.65 -12.24 16 21 C -0.17 -3.46 5.03 -15.87 -0.08 -3.54 16 22 C -0.16 -2.80 10.55 26.26 0.28 -2.53 16 23 C -0.10 -1.30 6.81 30.53 0.21 -1.10 16 24 C -0.12 -1.63 7.20 31.76 0.23 -1.41 16 25 C -0.09 -1.58 6.70 30.59 0.21 -1.37 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 0.95 8.08 -2.39 -0.02 0.94 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.13 2.73 8.14 -2.38 -0.02 2.71 16 33 H 0.41 14.08 8.54 -92.71 -0.79 13.29 16 34 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 38 H 0.12 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.18 354.55 3.10 -66.08 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.10 Total: 23.60 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.38 Total: -10.97 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -1.96 Total: -86.47 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -1.08 Total: -39.44 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.22 kcal Total: -69.18 3.10 -66.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073057201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.643 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds