Wall clock time and date at job start Tue Mar 31 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.46931 * 2 1 4 4 C 1.42904 * 114.00327 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46505 * 330.00068 * 4 3 2 6 6 C 1.52997 * 109.47396 * 210.00003 * 4 3 2 7 7 C 1.50701 * 109.47212 * 64.99575 * 6 4 3 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47535 * 325.00618 * 10 9 7 12 12 C 1.53003 * 109.47218 * 85.00262 * 10 9 7 13 13 C 1.50702 * 109.47162 * 205.00318 * 10 9 7 14 14 H 1.08004 * 119.99698 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00281 * 180.02562 * 13 10 9 16 16 N 1.31521 * 120.00142 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 120.00048 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47363 * 89.99895 * 17 15 13 19 19 H 1.48500 * 109.47146 * 209.99977 * 17 15 13 20 20 H 1.48500 * 109.47134 * 329.99762 * 17 15 13 21 21 C 1.50699 * 109.47186 * 89.99534 * 4 3 2 22 22 C 1.30528 * 124.44897 * 235.03010 * 21 4 3 23 23 C 1.51102 * 111.10380 * 179.97438 * 22 21 4 24 24 C 1.54638 * 104.72331 * 16.43822 * 23 22 21 25 25 C 1.51098 * 124.44544 * 54.72651 * 21 4 3 26 26 H 1.08997 * 109.47317 * 300.00143 * 1 2 3 27 27 H 1.09001 * 109.46737 * 60.00433 * 1 2 3 28 28 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47317 * 239.99857 * 2 1 3 30 30 H 1.09001 * 109.46737 * 119.99567 * 2 1 3 31 31 H 1.09002 * 109.47153 * 304.99576 * 6 4 3 32 32 H 1.09001 * 109.46832 * 184.99767 * 6 4 3 33 33 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.46570 * 59.99667 * 12 10 9 35 35 H 1.09000 * 109.47614 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47302 * 299.99899 * 12 10 9 37 37 H 0.97001 * 119.99957 * 179.97438 * 16 15 13 38 38 H 1.08002 * 124.44560 * 0.02562 * 22 21 4 39 39 H 1.09007 * 110.38193 * 135.24270 * 23 22 21 40 40 H 1.08994 * 110.39005 * 257.62321 * 23 22 21 41 41 H 1.09006 * 111.03483 * 93.40013 * 24 23 22 42 42 H 1.08998 * 111.03124 * 217.33027 * 24 23 22 43 43 H 1.09002 * 110.38816 * 282.39518 * 25 21 4 44 44 H 1.08998 * 110.38765 * 44.77480 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.8403 2.7459 0.7218 7 6 3.4470 2.6545 2.1737 8 8 2.8941 1.6589 2.5906 9 7 3.7106 3.6789 3.0090 10 6 3.3287 3.5898 4.4205 11 1 2.3933 3.0375 4.5097 12 6 4.4261 2.8633 5.2009 13 6 3.1484 4.9772 4.9807 14 1 3.3024 5.8390 4.3483 15 6 2.7868 5.1462 6.3004 16 7 2.6299 6.3570 6.7894 17 14 2.5211 3.6555 7.3943 18 1 3.8016 3.2886 8.0507 19 1 1.5076 3.9767 8.4311 20 1 2.0428 2.5161 6.5708 21 6 3.9323 1.4996 -1.4200 22 6 4.8274 0.6856 -1.9099 23 6 5.1056 0.9937 -3.3628 24 6 4.5323 2.4132 -3.5804 25 6 3.4600 2.4823 -2.4661 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3371 3.5965 0.2619 32 1 4.9197 2.8774 0.6453 33 1 4.1531 4.4750 2.6756 34 1 5.3616 3.4156 5.1117 35 1 4.1423 2.7974 6.2512 36 1 4.5565 1.8599 4.7958 37 1 2.3752 6.4759 7.7178 38 1 5.3056 -0.1048 -1.3505 39 1 6.1787 0.9842 -3.5541 40 1 4.5978 0.2761 -4.0071 41 1 5.3013 3.1722 -3.4363 42 1 4.0753 2.5037 -4.5658 43 1 2.4858 2.1850 -2.8541 44 1 3.4125 3.4880 -2.0483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073057204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:36 Heat of formation + Delta-G solvation = -78.206372 kcal Electronic energy + Delta-G solvation = -22584.618649 eV Core-core repulsion = 19308.986068 eV Total energy + Delta-G solvation = -3275.632581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70835 -38.57958 -37.21117 -34.92395 -32.75397 -32.28022 -30.43958 -29.84901 -28.77361 -27.87982 -25.15972 -23.56345 -22.66643 -21.17244 -20.67520 -19.48064 -18.42947 -17.23463 -16.68775 -16.29517 -15.82485 -15.47354 -15.30570 -14.83891 -14.33885 -14.29118 -13.74118 -13.06706 -12.91266 -12.85626 -12.72854 -12.41724 -12.17427 -12.08336 -11.95809 -11.81850 -11.69180 -11.58326 -11.31836 -11.22497 -11.10113 -11.05356 -10.78367 -10.63100 -10.15571 -9.67110 -9.41181 -9.18989 -9.08473 -8.85089 -8.71892 -8.06737 -6.17890 -4.19845 1.99194 3.25144 3.35900 3.37410 3.42588 3.80047 4.05747 4.34563 4.44191 4.50686 4.85813 4.98249 5.08380 5.16912 5.19175 5.23347 5.24834 5.39166 5.49140 5.52697 5.58684 5.59677 5.66766 5.72452 5.79981 5.85890 5.88424 5.96334 6.06414 6.09467 6.22300 6.34651 6.39087 6.41861 6.60003 6.71122 6.89810 7.24351 7.37005 7.43386 7.58027 8.21120 8.60171 8.80266 9.04340 9.43697 10.94430 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.003950 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.261248 B = 7087.310746 C = 7665.511147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.363 6.363 4 C 0.158 3.842 5 H 0.072 0.928 6 C -0.137 4.137 7 C 0.507 3.493 8 O -0.550 6.550 9 N -0.705 5.705 10 C 0.237 3.763 11 H 0.048 0.952 12 C -0.160 4.160 13 C -0.533 4.533 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.262 1.262 21 C -0.149 4.149 22 C -0.165 4.165 23 C -0.097 4.097 24 C -0.126 4.126 25 C -0.087 4.087 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.394 0.606 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.267 0.733 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -10.674 -19.386 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.282 6.282 4 C 0.099 3.901 5 H 0.090 0.910 6 C -0.177 4.177 7 C 0.292 3.708 8 O -0.429 6.429 9 N -0.353 5.353 10 C 0.133 3.867 11 H 0.065 0.935 12 C -0.218 4.218 13 C -0.571 4.571 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.187 1.187 21 C -0.149 4.149 22 C -0.183 4.183 23 C -0.134 4.134 24 C -0.164 4.164 25 C -0.124 4.124 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.227 0.773 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.167 -11.097 -18.900 22.145 hybrid contribution 0.334 -0.485 0.615 0.851 sum 3.501 -11.582 -18.285 21.925 Atomic orbital electron populations 1.21706 0.94148 1.01723 1.03012 1.22379 0.95240 0.84117 0.99511 1.87930 1.19444 1.26194 1.94651 1.20346 0.82379 0.97721 0.89628 0.90993 1.21781 1.02753 0.99397 0.93794 1.20329 0.79290 0.83760 0.87426 1.90630 1.42844 1.31398 1.78038 1.46171 1.59938 1.18227 1.10980 1.19060 0.93774 0.97197 0.76654 0.93451 1.22444 1.00882 0.98857 0.99638 1.21067 1.48573 0.90757 0.96717 0.90237 1.24837 0.94208 0.95895 0.97673 1.69876 1.46984 1.21004 1.15233 0.86865 0.77577 0.83547 0.80415 1.20373 1.22199 1.18682 1.22604 0.97809 0.98268 0.96221 1.23174 0.99235 0.99560 0.96306 1.21317 1.00974 0.96904 0.94226 1.22502 0.98350 0.96821 0.98714 1.21221 0.98729 0.98756 0.93687 0.91561 0.92336 0.91595 0.94361 0.92982 0.88331 0.88186 0.77280 0.92906 0.93568 0.94652 0.92344 0.86010 0.91312 0.90923 0.91059 0.91149 0.90567 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.87 6.46 37.16 0.24 1.11 16 3 O -0.36 -5.71 9.19 -49.64 -0.46 -6.17 16 4 C 0.16 2.19 2.05 -27.89 -0.06 2.13 16 5 H 0.07 1.05 7.52 -51.93 -0.39 0.66 16 6 C -0.14 -1.93 5.36 -27.88 -0.15 -2.08 16 7 C 0.51 9.69 7.67 -10.98 -0.08 9.61 16 8 O -0.55 -12.42 15.08 -8.85 -0.13 -12.55 16 9 N -0.70 -14.25 5.07 -54.93 -0.28 -14.53 16 10 C 0.24 5.77 2.15 -69.08 -0.15 5.62 16 11 H 0.05 1.28 6.64 -51.93 -0.34 0.94 16 12 C -0.16 -3.64 8.96 37.16 0.33 -3.30 16 13 C -0.53 -14.66 9.31 -34.44 -0.32 -14.98 16 14 H 0.08 2.29 7.98 -52.48 -0.42 1.87 16 15 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 16 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 17 Si 0.89 22.14 24.37 -169.99 -4.14 17.99 16 18 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 21 C -0.15 -1.69 5.03 -100.74 -0.51 -2.19 16 22 C -0.16 -1.64 10.55 -35.70 -0.38 -2.02 16 23 C -0.10 -0.80 6.81 -26.83 -0.18 -0.98 16 24 C -0.13 -1.03 7.20 -24.92 -0.18 -1.21 16 25 C -0.09 -0.88 6.71 -26.74 -0.18 -1.06 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.10 1.30 7.82 -51.93 -0.41 0.89 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.73 7.81 -51.93 -0.41 0.33 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -32.20 353.90 -7.81 -40.01 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.58 Total: 4.60 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.33 Total: -8.67 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.50 Total: -40.55 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.59 Total: -18.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.20 -7.81 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073057204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.192 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds