Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.46931 * 2 1 4 4 C 1.42904 * 114.00327 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46505 * 330.00068 * 4 3 2 6 6 C 1.52997 * 109.47396 * 210.00003 * 4 3 2 7 7 C 1.50701 * 109.47212 * 64.99575 * 6 4 3 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47535 * 325.00618 * 10 9 7 12 12 C 1.53003 * 109.47218 * 85.00262 * 10 9 7 13 13 C 1.50702 * 109.47162 * 205.00318 * 10 9 7 14 14 H 1.08004 * 119.99698 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00281 * 180.02562 * 13 10 9 16 16 N 1.31521 * 120.00142 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 120.00048 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47363 * 89.99895 * 17 15 13 19 19 H 1.48500 * 109.47146 * 209.99977 * 17 15 13 20 20 H 1.48500 * 109.47134 * 329.99762 * 17 15 13 21 21 C 1.50699 * 109.47186 * 89.99534 * 4 3 2 22 22 C 1.30528 * 124.44897 * 235.03010 * 21 4 3 23 23 C 1.51102 * 111.10380 * 179.97438 * 22 21 4 24 24 C 1.54638 * 104.72331 * 16.43822 * 23 22 21 25 25 C 1.51098 * 124.44544 * 54.72651 * 21 4 3 26 26 H 1.08997 * 109.47317 * 300.00143 * 1 2 3 27 27 H 1.09001 * 109.46737 * 60.00433 * 1 2 3 28 28 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47317 * 239.99857 * 2 1 3 30 30 H 1.09001 * 109.46737 * 119.99567 * 2 1 3 31 31 H 1.09002 * 109.47153 * 304.99576 * 6 4 3 32 32 H 1.09001 * 109.46832 * 184.99767 * 6 4 3 33 33 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.46570 * 59.99667 * 12 10 9 35 35 H 1.09000 * 109.47614 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47302 * 299.99899 * 12 10 9 37 37 H 0.97001 * 119.99957 * 179.97438 * 16 15 13 38 38 H 1.08002 * 124.44560 * 0.02562 * 22 21 4 39 39 H 1.09007 * 110.38193 * 135.24270 * 23 22 21 40 40 H 1.08994 * 110.39005 * 257.62321 * 23 22 21 41 41 H 1.09006 * 111.03483 * 93.40013 * 24 23 22 42 42 H 1.08998 * 111.03124 * 217.33027 * 24 23 22 43 43 H 1.09002 * 110.38816 * 282.39518 * 25 21 4 44 44 H 1.08998 * 110.38765 * 44.77480 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.8403 2.7459 0.7218 7 6 3.4470 2.6545 2.1737 8 8 2.8941 1.6589 2.5906 9 7 3.7106 3.6789 3.0090 10 6 3.3287 3.5898 4.4205 11 1 2.3933 3.0375 4.5097 12 6 4.4261 2.8633 5.2009 13 6 3.1484 4.9772 4.9807 14 1 3.3024 5.8390 4.3483 15 6 2.7868 5.1462 6.3004 16 7 2.6299 6.3570 6.7894 17 14 2.5211 3.6555 7.3943 18 1 3.8016 3.2886 8.0507 19 1 1.5076 3.9767 8.4311 20 1 2.0428 2.5161 6.5708 21 6 3.9323 1.4996 -1.4200 22 6 4.8274 0.6856 -1.9099 23 6 5.1056 0.9937 -3.3628 24 6 4.5323 2.4132 -3.5804 25 6 3.4600 2.4823 -2.4661 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3371 3.5965 0.2619 32 1 4.9197 2.8774 0.6453 33 1 4.1531 4.4750 2.6756 34 1 5.3616 3.4156 5.1117 35 1 4.1423 2.7974 6.2512 36 1 4.5565 1.8599 4.7958 37 1 2.3752 6.4759 7.7178 38 1 5.3056 -0.1048 -1.3505 39 1 6.1787 0.9842 -3.5541 40 1 4.5978 0.2761 -4.0071 41 1 5.3013 3.1722 -3.4363 42 1 4.0753 2.5037 -4.5658 43 1 2.4858 2.1850 -2.8541 44 1 3.4125 3.4880 -2.0483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073057204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -98.614754 kcal Electronic energy + Delta-G solvation = -22585.503623 eV Core-core repulsion = 19308.986068 eV Total energy + Delta-G solvation = -3276.517555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95756 -39.79436 -38.22221 -36.77158 -34.39473 -33.79441 -31.95705 -31.04107 -29.69574 -28.75216 -27.22472 -24.78164 -23.69395 -22.69595 -21.59273 -21.12038 -19.42605 -18.91338 -17.85733 -17.68338 -17.41841 -16.71869 -16.48389 -16.01896 -15.86484 -15.51800 -15.15219 -14.92736 -14.44668 -14.12859 -13.91592 -13.62952 -13.54752 -13.46178 -13.15758 -12.94579 -12.79818 -12.74378 -12.59022 -12.51607 -12.14468 -12.07195 -11.99494 -11.87592 -11.65078 -11.62057 -11.28045 -10.87758 -10.68607 -10.45522 -9.82613 -9.68178 -8.38719 -6.44294 1.17708 1.25813 1.34301 1.44091 1.83933 2.25528 2.49123 2.83058 2.97546 3.60848 3.72852 3.93286 4.08218 4.14961 4.18700 4.25229 4.37624 4.43398 4.47861 4.49817 4.53297 4.54042 4.63256 4.72662 4.78758 4.85808 4.93047 4.95789 5.00682 5.04373 5.05750 5.08113 5.23099 5.25923 5.32927 5.42565 5.44376 5.61309 5.68600 5.90075 6.14675 6.38415 6.57448 6.92142 7.19503 7.51270 8.76674 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.003950 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.261248 B = 7087.310746 C = 7665.511147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 O -0.388 6.388 4 C 0.157 3.843 5 H 0.060 0.940 6 C -0.126 4.126 7 C 0.504 3.496 8 O -0.586 6.586 9 N -0.705 5.705 10 C 0.242 3.758 11 H 0.018 0.982 12 C -0.153 4.153 13 C -0.533 4.533 14 H 0.056 0.944 15 C 0.029 3.971 16 N -0.934 5.934 17 Si 0.940 3.060 18 H -0.258 1.258 19 H -0.292 1.292 20 H -0.265 1.265 21 C -0.167 4.167 22 C -0.152 4.152 23 C -0.097 4.097 24 C -0.122 4.122 25 C -0.088 4.088 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.407 0.593 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.270 0.730 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -11.912 -21.127 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 O -0.308 6.308 4 C 0.099 3.901 5 H 0.078 0.922 6 C -0.165 4.165 7 C 0.291 3.709 8 O -0.467 6.467 9 N -0.354 5.354 10 C 0.137 3.863 11 H 0.036 0.964 12 C -0.211 4.211 13 C -0.571 4.571 14 H 0.074 0.926 15 C -0.171 4.171 16 N -0.573 5.573 17 Si 0.767 3.233 18 H -0.184 1.184 19 H -0.219 1.219 20 H -0.190 1.190 21 C -0.167 4.167 22 C -0.170 4.170 23 C -0.134 4.134 24 C -0.159 4.159 25 C -0.125 4.125 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.427 -12.327 -20.670 24.470 hybrid contribution -0.059 -0.093 1.084 1.090 sum 4.368 -12.420 -19.586 23.600 Atomic orbital electron populations 1.21716 0.93217 1.03102 1.02179 1.22465 0.96060 0.83426 0.99484 1.87891 1.20666 1.27360 1.94866 1.20366 0.81635 0.96837 0.91267 0.92242 1.21809 1.04736 1.00294 0.89698 1.21180 0.78031 0.82543 0.89117 1.90614 1.44288 1.32750 1.79079 1.46044 1.60314 1.19394 1.09693 1.18714 0.93424 0.94962 0.79213 0.96420 1.22324 1.00598 0.99349 0.98837 1.21285 1.47692 0.91635 0.96524 0.92559 1.25561 0.94154 0.98230 0.99171 1.69980 1.48492 1.22926 1.15891 0.85990 0.78290 0.80230 0.78756 1.18370 1.21903 1.19035 1.22402 0.99158 1.00037 0.95104 1.23454 0.97722 0.98534 0.97307 1.21375 1.02034 0.97063 0.92901 1.22509 0.97836 0.96996 0.98553 1.21234 0.99100 0.98155 0.94030 0.93917 0.91513 0.89165 0.92441 0.94807 0.87139 0.85076 0.75811 0.91549 0.94232 0.93614 0.92048 0.85457 0.89858 0.89979 0.90478 0.89878 0.91310 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 10.28 71.98 0.74 -2.69 16 2 C 0.06 1.67 6.46 71.98 0.46 2.13 16 3 O -0.39 -12.13 9.19 -135.20 -1.24 -13.37 16 4 C 0.16 4.22 2.05 29.85 0.06 4.28 16 5 H 0.06 1.71 7.52 -2.39 -0.02 1.69 16 6 C -0.13 -3.37 5.36 29.85 0.16 -3.21 16 7 C 0.50 19.03 7.67 87.66 0.67 19.70 16 8 O -0.59 -26.69 15.08 10.74 0.16 -26.52 16 9 N -0.70 -28.22 5.07 -446.09 -2.26 -30.48 16 10 C 0.24 11.78 2.15 44.25 0.10 11.88 16 11 H 0.02 0.98 6.64 -2.39 -0.02 0.96 16 12 C -0.15 -6.76 8.96 71.98 0.65 -6.12 16 13 C -0.53 -29.67 9.31 25.60 0.24 -29.43 16 14 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 15 C 0.03 1.63 5.45 84.65 0.46 2.10 16 16 N -0.93 -56.68 13.96 21.45 0.30 -56.38 16 17 Si 0.94 45.61 24.37 68.60 1.67 47.28 16 18 H -0.26 -11.69 6.87 99.48 0.68 -11.00 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.27 -12.94 6.53 99.48 0.65 -12.29 16 21 C -0.17 -3.47 5.03 -15.88 -0.08 -3.55 16 22 C -0.15 -2.64 10.55 26.26 0.28 -2.36 16 23 C -0.10 -1.27 6.81 30.53 0.21 -1.06 16 24 C -0.12 -1.63 7.20 31.77 0.23 -1.40 16 25 C -0.09 -1.62 6.71 30.59 0.21 -1.41 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 31 H 0.11 2.73 7.82 -2.39 -0.02 2.72 16 32 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.41 14.13 8.54 -92.71 -0.79 13.34 16 34 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.27 7.81 -2.39 -0.02 1.26 16 Total: -1.00 -69.89 353.90 3.11 -66.78 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.10 Total: 23.84 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.38 Total: -11.14 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.96 Total: -86.86 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.08 Total: -39.90 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Total: -69.89 3.11 -66.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073057204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.836 kcal (2) G-P(sol) polarization free energy of solvation -69.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds