Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53000 * 109.46922 * 149.99499 * 4 3 2 7 7 C 1.50694 * 109.47623 * 294.99734 * 6 4 3 8 8 O 1.21284 * 119.99823 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99997 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99895 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47182 * 35.00466 * 10 9 7 12 12 C 1.53000 * 109.47106 * 275.00127 * 10 9 7 13 13 C 1.50701 * 109.47346 * 155.00099 * 10 9 7 14 14 H 1.08001 * 119.99456 * 0.02562 * 13 10 9 15 15 C 1.37869 * 120.00270 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00095 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 120.00159 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47005 * 90.00223 * 17 15 13 19 19 H 1.48504 * 109.46913 * 210.00221 * 17 15 13 20 20 H 1.48497 * 109.46994 * 330.00127 * 17 15 13 21 21 C 1.50696 * 109.46904 * 269.99781 * 4 3 2 22 22 C 1.30526 * 124.44422 * 125.02373 * 21 4 3 23 23 C 1.51104 * 111.10360 * 179.97438 * 22 21 4 24 24 C 1.54638 * 104.72392 * 16.43220 * 23 22 21 25 25 C 1.51105 * 124.45088 * 304.72161 * 21 4 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.09000 * 109.47104 * 55.00874 * 6 4 3 32 32 H 1.09006 * 109.46821 * 174.99657 * 6 4 3 33 33 H 0.96999 * 120.00511 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.47377 * 300.00220 * 12 10 9 35 35 H 1.08999 * 109.47042 * 59.99709 * 12 10 9 36 36 H 1.09003 * 109.47354 * 179.97438 * 12 10 9 37 37 H 0.97000 * 120.00441 * 179.97438 * 16 15 13 38 38 H 1.08002 * 124.45324 * 359.95647 * 22 21 4 39 39 H 1.08999 * 110.39037 * 135.25021 * 23 22 21 40 40 H 1.09000 * 110.38713 * 257.63143 * 23 22 21 41 41 H 1.09002 * 111.03340 * 93.40296 * 24 23 22 42 42 H 1.08998 * 111.03661 * 217.33381 * 24 23 22 43 43 H 1.09002 * 110.38579 * 282.39782 * 25 21 4 44 44 H 1.09003 * 110.38120 * 44.77065 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.8403 2.7457 -0.7219 7 6 3.4472 2.6543 -2.1738 8 8 2.8935 1.6589 -2.5905 9 7 3.7099 3.6789 -3.0089 10 6 3.3271 3.5902 -4.4203 11 1 2.3916 3.0378 -4.5090 12 6 4.4242 2.8643 -5.2016 13 6 3.1461 4.9777 -4.9799 14 1 3.3011 5.8394 -4.3476 15 6 2.7836 5.1470 -6.2993 16 7 2.5954 4.0977 -7.0694 17 14 2.5599 6.8670 -6.9931 18 1 3.8513 7.3501 -7.5446 19 1 1.5410 6.8364 -8.0730 20 1 2.1096 7.7816 -5.9134 21 6 3.9322 1.4996 1.4200 22 6 4.8279 0.6862 1.9097 23 6 5.1069 0.9949 3.3623 24 6 3.9200 1.8787 3.8113 25 6 3.4687 2.4901 2.4628 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3373 3.5963 -0.2620 32 1 4.9197 2.8773 -0.6454 33 1 4.1523 4.4752 -2.6756 34 1 5.3597 3.4167 -5.1128 35 1 4.5551 1.8608 -4.7968 36 1 4.1392 2.7979 -6.2516 37 1 2.3400 4.2168 -7.9976 38 1 5.3067 -0.1039 1.3502 39 1 5.1381 0.0753 3.9468 40 1 6.0452 1.5406 3.4611 41 1 3.1288 1.2749 4.2557 42 1 4.2499 2.6565 4.4999 43 1 3.9435 3.4584 2.3043 44 1 2.3836 2.5894 2.4362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073057206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = -105.110866 kcal Electronic energy + Delta-G solvation = -22505.399533 eV Core-core repulsion = 19228.600285 eV Total energy + Delta-G solvation = -3276.799248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89759 -39.74805 -38.20139 -36.65017 -34.31787 -33.74877 -31.52508 -30.80086 -29.56339 -28.69623 -27.34089 -24.72255 -23.70321 -22.71435 -21.58005 -21.00737 -19.37572 -18.75362 -17.83341 -17.59477 -17.13561 -16.76175 -16.24752 -16.00964 -15.96290 -15.45873 -15.08125 -14.60356 -14.28702 -13.94128 -13.63257 -13.55951 -13.34771 -13.10106 -13.01357 -12.94479 -12.75606 -12.64514 -12.56432 -12.41810 -12.27721 -12.13943 -12.03774 -12.02270 -11.88314 -11.67126 -11.09946 -10.70064 -10.55838 -10.44768 -9.69715 -9.67709 -8.17493 -6.35194 1.18135 1.44208 1.45417 1.56061 1.90952 2.36351 2.65049 2.84446 3.12688 3.63324 3.73944 3.94490 4.10542 4.15596 4.18559 4.25992 4.37259 4.47905 4.50448 4.53403 4.58747 4.76732 4.79835 4.86472 4.91247 4.92829 4.96113 5.04296 5.06323 5.09585 5.10290 5.22737 5.25418 5.41987 5.44716 5.61915 5.63425 5.70756 5.89945 5.93066 6.11017 6.38140 6.73374 7.02310 7.33114 7.62846 8.88896 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.003671 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.809745 B = 7624.839415 C = 8083.791064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.062 3.938 3 O -0.387 6.387 4 C 0.157 3.843 5 H 0.055 0.945 6 C -0.124 4.124 7 C 0.498 3.502 8 O -0.592 6.592 9 N -0.710 5.710 10 C 0.271 3.729 11 H -0.006 1.006 12 C -0.132 4.132 13 C -0.547 4.547 14 H 0.073 0.927 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.166 4.166 22 C -0.154 4.154 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.090 4.090 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.404 0.596 34 H 0.041 0.959 35 H 0.011 0.989 36 H 0.065 0.935 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -4.102 21.601 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 O -0.307 6.307 4 C 0.099 3.901 5 H 0.073 0.927 6 C -0.164 4.164 7 C 0.286 3.714 8 O -0.474 6.474 9 N -0.359 5.359 10 C 0.167 3.833 11 H 0.012 0.988 12 C -0.191 4.191 13 C -0.585 4.585 14 H 0.091 0.909 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.166 4.166 22 C -0.172 4.172 23 C -0.133 4.133 24 C -0.158 4.158 25 C -0.127 4.127 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.239 0.761 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.067 -4.680 21.112 22.003 hybrid contribution 0.004 0.591 -1.039 1.195 sum 4.071 -4.089 20.073 20.886 Atomic orbital electron populations 1.21708 0.93110 1.03129 1.02174 1.22454 0.96145 0.83461 0.99339 1.87876 1.20668 1.27308 1.94840 1.20348 0.81637 0.96798 0.91353 0.92730 1.21805 1.04571 1.00232 0.89764 1.21232 0.78245 0.82742 0.89227 1.90617 1.44529 1.32995 1.79221 1.46282 1.60059 1.19001 1.10545 1.18296 0.92427 0.95611 0.76957 0.98810 1.21882 0.98520 0.96262 1.02392 1.21568 1.48322 0.92091 0.96536 0.90906 1.25830 0.94360 1.01386 0.97137 1.70062 1.47082 1.31267 1.07316 0.85323 0.78040 0.78895 0.77945 1.19492 1.21230 1.18823 1.22399 0.99550 0.99403 0.95275 1.23459 0.97571 0.98377 0.97809 1.21372 0.99257 1.00417 0.92204 1.22487 0.97788 0.99326 0.96218 1.21258 1.00962 0.97782 0.92655 0.94053 0.89138 0.91319 0.95178 0.92356 0.86974 0.85247 0.76086 0.94033 0.97035 0.91619 0.92577 0.85686 0.90098 0.89466 0.91232 0.89425 0.89964 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 10.28 71.98 0.74 -2.93 16 2 C 0.06 1.82 6.46 71.98 0.46 2.29 16 3 O -0.39 -12.94 9.19 -135.19 -1.24 -14.18 16 4 C 0.16 4.55 2.05 29.85 0.06 4.61 16 5 H 0.05 1.74 7.52 -2.39 -0.02 1.72 16 6 C -0.12 -3.57 5.35 29.85 0.16 -3.41 16 7 C 0.50 20.55 7.67 87.66 0.67 21.22 16 8 O -0.59 -29.88 15.08 10.75 0.16 -29.72 16 9 N -0.71 -30.39 5.07 -446.09 -2.26 -32.65 16 10 C 0.27 14.51 2.56 44.24 0.11 14.62 16 11 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 12 C -0.13 -6.85 9.26 71.98 0.67 -6.19 16 13 C -0.55 -29.67 8.73 25.60 0.22 -29.45 16 14 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 15 C 0.01 0.69 5.30 84.65 0.45 1.14 16 16 N -0.92 -53.81 11.32 21.44 0.24 -53.56 16 17 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 C -0.17 -3.67 5.03 -15.87 -0.08 -3.75 16 22 C -0.15 -2.88 10.55 26.26 0.28 -2.60 16 23 C -0.10 -1.32 6.81 30.53 0.21 -1.11 16 24 C -0.12 -1.71 7.20 31.76 0.23 -1.48 16 25 C -0.09 -1.69 6.70 30.59 0.21 -1.49 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.03 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.40 14.42 8.54 -92.71 -0.79 13.63 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 37 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -70.16 361.37 3.49 -66.67 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.17 Total: 27.30 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.39 Total: -8.53 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.02 Total: -86.21 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.08 Total: -43.89 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.16 3.49 -66.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073057206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.442 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds