Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42898 * 109.47221 * 2 1 4 4 C 1.42901 * 113.99937 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47301 * 329.99708 * 4 3 2 6 6 C 1.53003 * 109.46884 * 210.00020 * 4 3 2 7 7 C 1.50698 * 109.47272 * 64.99901 * 6 4 3 8 8 O 1.21281 * 119.99871 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00287 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00388 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47378 * 35.00208 * 10 9 7 12 12 C 1.53009 * 109.47194 * 275.00617 * 10 9 7 13 13 C 1.50702 * 109.47571 * 155.00548 * 10 9 7 14 14 H 1.08002 * 119.99446 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00072 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99826 * 179.72119 * 15 13 10 17 17 Si 1.86800 * 120.00406 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 C 1.50703 * 109.47238 * 90.00236 * 4 3 2 22 22 C 1.30526 * 124.44460 * 235.01986 * 21 4 3 23 23 C 1.51103 * 111.10137 * 179.97438 * 22 21 4 24 24 C 1.54634 * 104.72471 * 16.44015 * 23 22 21 25 25 C 1.51102 * 124.44862 * 54.72031 * 21 4 3 26 26 H 1.08996 * 109.47376 * 59.99855 * 1 2 3 27 27 H 1.09003 * 109.47400 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47403 * 299.99860 * 1 2 3 29 29 H 1.09001 * 109.47403 * 240.00139 * 2 1 3 30 30 H 1.08996 * 109.47376 * 120.00145 * 2 1 3 31 31 H 1.09000 * 109.47327 * 304.99558 * 6 4 3 32 32 H 1.09007 * 109.47157 * 184.99977 * 6 4 3 33 33 H 0.97008 * 119.99537 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.46592 * 299.99497 * 12 10 9 35 35 H 1.08990 * 109.47127 * 59.99623 * 12 10 9 36 36 H 1.08994 * 109.46846 * 179.97438 * 12 10 9 37 37 H 0.96999 * 120.00128 * 180.27192 * 16 15 13 38 38 H 1.08002 * 124.44971 * 0.02562 * 22 21 4 39 39 H 1.08998 * 110.38508 * 135.25803 * 23 22 21 40 40 H 1.09006 * 110.38786 * 257.62413 * 23 22 21 41 41 H 1.08997 * 111.03828 * 93.40021 * 24 23 22 42 42 H 1.09000 * 111.03124 * 217.33475 * 24 23 22 43 43 H 1.09000 * 110.38744 * 282.39902 * 25 21 4 44 44 H 1.09000 * 110.38590 * 44.77313 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.8635 0.6014 0.5130 6 6 3.8409 2.7456 0.7207 7 6 3.4488 2.6537 2.1729 8 8 2.8962 1.6579 2.5900 9 7 3.7130 3.6777 3.0084 10 6 3.3324 3.5883 4.4202 11 1 3.4453 2.5596 4.7625 12 6 1.8746 4.0231 4.5839 13 6 4.2205 4.4902 5.2381 14 1 4.9916 5.0715 4.7546 15 6 4.0492 4.5723 6.6037 16 7 4.8278 5.3552 7.3182 17 14 2.7159 3.5662 7.4400 18 1 1.4588 4.3553 7.4906 19 1 2.4849 2.3157 6.6731 20 1 3.1439 3.2279 8.8211 21 6 3.9310 1.5000 -1.4216 22 6 4.8257 0.6862 -1.9125 23 6 5.1028 0.9947 -3.3655 24 6 4.5292 2.4143 -3.5822 25 6 3.4579 2.4831 -2.4670 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.3374 3.5963 0.2615 32 1 4.9202 2.8771 0.6434 33 1 4.1553 4.4741 2.6748 34 1 1.7617 5.0518 4.2417 35 1 1.2323 3.3709 3.9924 36 1 1.5913 3.9561 5.6343 37 1 4.7099 5.4100 8.2794 38 1 5.3045 -0.1044 -1.3537 39 1 6.1756 0.9851 -3.5578 40 1 4.5943 0.2773 -4.0097 41 1 5.2983 3.1732 -3.4385 42 1 4.0714 2.5051 -4.5672 43 1 2.4834 2.1859 -2.8543 44 1 3.4107 3.4886 -2.0488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073057209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -78.428391 kcal Electronic energy + Delta-G solvation = -22597.157929 eV Core-core repulsion = 19321.515720 eV Total energy + Delta-G solvation = -3275.642209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70962 -38.57828 -37.22006 -34.92143 -32.76040 -32.28566 -30.45240 -29.84739 -28.77404 -27.87795 -25.15097 -23.56646 -22.68608 -21.16953 -20.67685 -19.47873 -18.42950 -17.23461 -16.69137 -16.29129 -15.83873 -15.46986 -15.33426 -14.78793 -14.52182 -14.12786 -13.74245 -13.06162 -12.97942 -12.86455 -12.67726 -12.47885 -12.15146 -12.07329 -11.93864 -11.84998 -11.66144 -11.60353 -11.30449 -11.22332 -11.13229 -11.05757 -10.77898 -10.63887 -10.15388 -9.66587 -9.42583 -9.18527 -9.08159 -8.84874 -8.72390 -8.06515 -6.18450 -4.20488 1.99738 3.25645 3.36027 3.37343 3.42613 3.79272 4.05395 4.34348 4.44271 4.50753 4.85623 4.98286 5.08350 5.16636 5.17655 5.22798 5.25304 5.37334 5.47876 5.52145 5.58329 5.59612 5.67173 5.72636 5.78652 5.84644 5.88340 5.95677 6.04886 6.08363 6.18651 6.36787 6.39572 6.45162 6.62520 6.71444 6.91930 7.25274 7.36728 7.41758 7.58158 8.20680 8.59992 8.79576 9.04314 9.43275 10.93832 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.004005 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.500313 B = 6990.339013 C = 7804.382894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.364 6.364 4 C 0.158 3.842 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.507 3.493 8 O -0.550 6.550 9 N -0.705 5.705 10 C 0.237 3.763 11 H 0.047 0.953 12 C -0.160 4.160 13 C -0.534 4.534 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.262 1.262 20 H -0.295 1.295 21 C -0.150 4.150 22 C -0.163 4.163 23 C -0.097 4.097 24 C -0.126 4.126 25 C -0.086 4.086 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.394 0.606 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.267 0.733 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -7.826 -20.919 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.099 3.901 5 H 0.091 0.909 6 C -0.177 4.177 7 C 0.292 3.708 8 O -0.429 6.429 9 N -0.353 5.353 10 C 0.134 3.866 11 H 0.065 0.935 12 C -0.218 4.218 13 C -0.572 4.572 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.187 1.187 20 H -0.222 1.222 21 C -0.150 4.150 22 C -0.182 4.182 23 C -0.134 4.134 24 C -0.164 4.164 25 C -0.123 4.123 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.227 0.773 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.014 -8.297 -20.407 22.235 hybrid contribution -0.255 -0.212 0.473 0.578 sum -3.269 -8.509 -19.935 21.920 Atomic orbital electron populations 1.21700 0.94205 1.01733 1.02895 1.22376 0.95166 0.84143 0.99598 1.87911 1.19539 1.26201 1.94674 1.20353 0.82282 0.97802 0.89641 0.90905 1.21781 1.02912 0.99274 0.93729 1.20328 0.79318 0.83674 0.87493 1.90631 1.42969 1.31432 1.77885 1.46175 1.59753 1.18469 1.10930 1.19060 0.91556 0.98369 0.77655 0.93531 1.22432 0.98990 1.00654 0.99721 1.21069 1.17633 1.26265 0.92193 0.90250 1.24835 0.95950 0.94747 0.97066 1.69873 1.38529 1.37855 1.06850 0.86864 0.81675 0.81587 0.78272 1.20339 1.18687 1.22224 1.22593 0.97915 0.98308 0.96196 1.23187 0.99133 0.99546 0.96289 1.21319 1.01022 0.96871 0.94230 1.22500 0.98356 0.96865 0.98675 1.21213 0.98704 0.98703 0.93704 0.92376 0.91580 0.91661 0.94324 0.92928 0.88464 0.88065 0.77278 0.92922 0.94490 0.93646 0.92340 0.85955 0.91270 0.90922 0.91042 0.91168 0.90623 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.15 0.38 -1.34 16 2 C 0.06 0.85 6.46 37.15 0.24 1.09 16 3 O -0.36 -5.60 9.19 -49.64 -0.46 -6.06 16 4 C 0.16 2.19 2.05 -27.88 -0.06 2.13 16 5 H 0.07 1.08 7.52 -51.93 -0.39 0.68 16 6 C -0.14 -1.93 5.36 -27.88 -0.15 -2.08 16 7 C 0.51 9.69 7.67 -10.99 -0.08 9.60 16 8 O -0.55 -12.42 15.08 -8.85 -0.13 -12.55 16 9 N -0.70 -14.25 5.07 -54.93 -0.28 -14.53 16 10 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 11 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 12 C -0.16 -3.69 8.96 37.16 0.33 -3.35 16 13 C -0.53 -14.63 9.31 -34.44 -0.32 -14.95 16 14 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 15 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 16 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 17 Si 0.89 22.13 24.37 -169.99 -4.14 17.99 16 18 H -0.28 -6.70 6.88 56.52 0.39 -6.31 16 19 H -0.26 -6.53 6.52 56.52 0.37 -6.16 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 C -0.15 -1.70 5.03 -100.74 -0.51 -2.21 16 22 C -0.16 -1.65 10.55 -35.70 -0.38 -2.03 16 23 C -0.10 -0.81 6.81 -26.83 -0.18 -0.99 16 24 C -0.13 -1.03 7.20 -24.93 -0.18 -1.21 16 25 C -0.09 -0.86 6.71 -26.74 -0.18 -1.04 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.10 1.24 7.82 -51.93 -0.41 0.83 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.08 3.28 -51.93 -0.17 0.91 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.71 7.81 -51.93 -0.41 0.31 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -32.07 353.90 -7.81 -39.88 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.58 Total: 4.54 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.33 Total: -8.64 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.50 Total: -40.49 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.59 Total: -18.61 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.07 -7.81 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073057209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.549 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds