Wall clock time and date at job start Tue Mar 31 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47579 * 2 1 4 4 O 1.42901 * 109.47195 * 239.99346 * 2 1 3 5 5 C 1.42903 * 114.00015 * 150.90397 * 4 2 1 6 6 C 1.53003 * 109.47045 * 272.43399 * 5 4 2 7 7 C 1.52996 * 109.47162 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47267 * 59.99864 * 7 6 5 9 9 C 1.53003 * 109.47140 * 300.00149 * 8 7 6 10 10 C 1.52996 * 109.46994 * 152.43229 * 5 4 2 11 11 C 1.50705 * 109.47194 * 119.99802 * 2 1 3 12 12 O 1.21293 * 120.00249 * 114.99553 * 11 2 1 13 13 N 1.34782 * 119.99567 * 295.00040 * 11 2 1 14 14 C 1.37100 * 119.99733 * 179.97438 * 13 11 2 15 15 H 1.07997 * 120.00006 * 227.98505 * 14 13 11 16 16 C 1.38949 * 120.00057 * 47.98561 * 14 13 11 17 17 N 1.31414 * 120.00314 * 193.99222 * 16 14 13 18 18 Si 1.86802 * 120.00140 * 13.98820 * 16 14 13 19 19 H 1.48503 * 109.47444 * 265.53389 * 18 16 14 20 20 H 1.48504 * 109.46759 * 25.53007 * 18 16 14 21 21 H 1.48497 * 109.47405 * 145.52899 * 18 16 14 22 22 C 1.46494 * 120.00256 * 359.97438 * 13 11 2 23 23 C 1.53005 * 117.50095 * 185.41261 * 22 13 11 24 24 C 1.52999 * 117.49840 * 116.79085 * 22 13 11 25 25 H 1.08999 * 109.47185 * 305.60711 * 1 2 3 26 26 H 1.08999 * 109.46799 * 65.60702 * 1 2 3 27 27 H 1.09002 * 109.47211 * 185.61078 * 1 2 3 28 28 H 1.09001 * 109.46848 * 32.43025 * 5 4 2 29 29 H 1.08995 * 109.47074 * 299.99962 * 6 5 4 30 30 H 1.09001 * 109.47324 * 59.99611 * 6 5 4 31 31 H 1.09001 * 109.46828 * 299.99686 * 7 6 5 32 32 H 1.08998 * 109.47501 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47513 * 179.97438 * 8 7 6 34 34 H 1.09005 * 109.47321 * 59.99627 * 8 7 6 35 35 H 1.08995 * 109.47074 * 299.99777 * 9 8 7 36 36 H 1.08998 * 109.47266 * 179.97438 * 9 8 7 37 37 H 1.08992 * 109.47282 * 299.99861 * 10 5 4 38 38 H 1.09002 * 109.46748 * 60.00231 * 10 5 4 39 39 H 0.96995 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.08999 * 115.55088 * 331.12536 * 22 13 11 41 41 H 1.08998 * 117.49367 * 359.97438 * 23 22 13 42 42 H 1.08996 * 117.50125 * 145.01788 * 23 22 13 43 43 H 1.09003 * 117.50149 * 214.98252 * 24 22 13 44 44 H 1.09003 * 117.49728 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 3.2756 -0.2079 -1.6294 6 6 3.0697 0.9726 -2.5808 7 6 4.4286 1.4718 -3.0757 8 6 5.1492 0.3417 -3.8137 9 6 5.3551 -0.8388 -2.8623 10 6 3.9955 -1.3383 -2.3676 11 6 2.0324 -0.7104 1.2305 12 8 2.6530 -1.7468 1.1216 13 7 1.7919 -0.1940 2.4520 14 6 2.2484 -0.8405 3.5715 15 1 1.5850 -1.0069 4.4073 16 6 3.5647 -1.2817 3.6308 17 7 3.9318 -2.1305 4.5645 18 14 4.8124 -0.6685 2.3832 19 1 4.9011 -1.6322 1.2569 20 1 4.3863 0.6574 1.8677 21 1 6.1417 -0.5429 3.0331 22 6 1.0427 1.0580 2.5836 23 6 0.9114 1.6589 3.9845 24 6 -0.2994 1.0045 3.3162 25 1 -0.3633 0.5983 0.8355 26 1 -0.3633 0.4244 -0.9359 27 1 -0.3634 -1.0228 0.1005 28 1 3.8775 0.1117 -0.7787 29 1 2.4678 0.6530 -3.4314 30 1 2.5567 1.7778 -2.0549 31 1 5.0301 1.7915 -2.2248 32 1 4.2820 2.3130 -3.7531 33 1 6.1171 0.6974 -4.1667 34 1 4.5476 0.0219 -4.6646 35 1 5.9566 -0.5190 -2.0115 36 1 5.8680 -1.6440 -3.3882 37 1 4.1422 -2.1792 -1.6899 38 1 3.3936 -1.6578 -3.2183 39 1 4.8506 -2.4387 4.6056 40 1 1.1313 1.7491 1.7454 41 1 1.3821 1.1224 4.8083 42 1 0.9138 2.7456 4.0683 43 1 -1.0937 1.6607 2.9603 44 1 -0.6251 0.0376 3.7000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074531962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:44 Heat of formation + Delta-G solvation = -59.760690 kcal Electronic energy + Delta-G solvation = -24027.698189 eV Core-core repulsion = 20752.865472 eV Total energy + Delta-G solvation = -3274.832717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72613 -38.54954 -36.66123 -35.81958 -32.90784 -31.96709 -30.95603 -30.69797 -28.98325 -25.35599 -23.36698 -22.55610 -22.16758 -21.85265 -21.16509 -19.74715 -19.41685 -17.24048 -16.63754 -16.20368 -15.57667 -14.90368 -14.67467 -14.45311 -14.15956 -13.95617 -13.59472 -13.34228 -13.14400 -13.03659 -12.59188 -12.45585 -12.16998 -12.10269 -11.88585 -11.33563 -11.32340 -11.15182 -11.06483 -10.94391 -10.81507 -10.60328 -10.45376 -10.28529 -10.19261 -10.08176 -9.91653 -9.80450 -9.46036 -8.60659 -8.16880 -7.43285 -6.19983 -4.03303 3.25705 3.37776 3.58191 3.69317 3.84900 4.39600 4.46435 4.55991 4.75090 4.77610 4.95436 5.08228 5.21570 5.25542 5.32357 5.38347 5.42016 5.46107 5.52464 5.55654 5.56892 5.58437 5.65012 5.72191 5.78792 5.94622 6.00174 6.07576 6.09474 6.11874 6.15927 6.18512 6.24533 6.27214 6.43131 6.49638 6.51887 6.61565 6.86706 7.51801 7.84252 8.03457 8.76021 8.92293 9.40423 9.80718 10.85788 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.007137 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.851033 B = 3922.030607 C = 4816.521529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 H 0.067 0.933 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.440 3.560 12 O -0.525 6.525 13 N -0.440 5.440 14 C -0.340 4.340 15 H 0.093 0.907 16 C 0.091 3.909 17 N -0.870 5.870 18 Si 0.904 3.096 19 H -0.255 1.255 20 H -0.282 1.282 21 H -0.305 1.305 22 C 0.061 3.939 23 C -0.172 4.172 24 C -0.198 4.198 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.272 0.728 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 9.691 -12.991 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.085 0.915 4 O -0.270 6.270 5 C 0.033 3.967 6 C -0.179 4.179 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.151 4.151 11 C 0.229 3.771 12 O -0.405 6.405 13 N -0.164 5.164 14 C -0.466 4.466 15 H 0.111 0.889 16 C -0.117 4.117 17 N -0.506 5.506 18 Si 0.734 3.266 19 H -0.181 1.181 20 H -0.207 1.207 21 H -0.234 1.234 22 C -0.045 4.045 23 C -0.209 4.209 24 C -0.237 4.237 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.154 8.861 -13.061 15.929 hybrid contribution 0.782 0.578 -0.237 1.001 sum -1.372 9.439 -13.298 16.365 Atomic orbital electron populations 1.21871 0.91909 1.03779 1.02545 1.22034 0.96136 0.94960 0.85690 0.91515 1.87940 1.35117 1.61942 1.42048 1.22072 0.85255 0.93821 0.95554 1.22087 0.97538 0.98177 1.00099 1.21501 0.96146 0.97845 1.00082 1.21560 1.00132 0.95687 0.98305 1.21537 0.97014 0.97871 0.99216 1.21532 0.95209 0.98121 1.00264 1.21002 0.84306 0.86784 0.85037 1.90550 1.40997 1.23697 1.85290 1.43177 1.49677 1.18141 1.05373 1.18659 0.95687 1.36835 0.95388 0.88925 1.25310 0.97639 0.93510 0.95252 1.69702 1.18812 1.28043 1.34004 0.86434 0.78751 0.79032 0.82369 1.18073 1.20730 1.23414 1.21826 0.96375 0.90288 0.95967 1.23173 1.01387 0.98965 0.97395 1.23310 0.91635 1.02748 1.06011 0.89954 0.91894 0.91457 0.92688 0.91106 0.92052 0.92009 0.91818 0.92079 0.91867 0.91950 0.91488 0.90585 0.91355 0.91833 0.87674 0.86880 0.89486 0.89426 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.25 37.16 0.34 -1.90 16 2 C 0.07 1.40 2.12 -27.88 -0.06 1.34 16 3 H 0.07 1.15 6.57 -51.93 -0.34 0.81 16 4 O -0.35 -6.88 9.18 -55.09 -0.51 -7.39 16 5 C 0.09 1.57 2.39 -26.73 -0.06 1.51 16 6 C -0.14 -1.88 5.48 -26.73 -0.15 -2.02 16 7 C -0.12 -1.35 5.92 -26.74 -0.16 -1.51 16 8 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 9 C -0.12 -1.55 5.93 -26.70 -0.16 -1.71 16 10 C -0.11 -1.81 5.58 -26.70 -0.15 -1.96 16 11 C 0.44 10.73 5.14 -10.98 -0.06 10.68 16 12 O -0.53 -15.08 12.49 -14.31 -0.18 -15.25 16 13 N -0.44 -10.60 2.42 -107.73 -0.26 -10.86 16 14 C -0.34 -9.55 8.18 -14.93 -0.12 -9.67 16 15 H 0.09 2.73 7.70 -52.49 -0.40 2.32 16 16 C 0.09 2.71 4.98 -17.47 -0.09 2.62 16 17 N -0.87 -26.81 13.96 55.50 0.77 -26.03 16 18 Si 0.90 24.41 24.76 -169.99 -4.21 20.20 16 19 H -0.26 -7.22 6.49 56.52 0.37 -6.86 16 20 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.31 -8.06 7.11 56.52 0.40 -7.65 16 22 C 0.06 1.14 4.39 -67.93 -0.30 0.84 16 23 C -0.17 -2.93 9.82 -26.73 -0.26 -3.19 16 24 C -0.20 -3.16 9.45 -26.73 -0.25 -3.41 16 25 H 0.08 1.17 5.07 -51.93 -0.26 0.91 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 1.09 7.81 -51.93 -0.41 0.68 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.78 7.74 -51.93 -0.40 0.38 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 40 H 0.11 1.67 6.42 -51.93 -0.33 1.34 16 41 H 0.11 2.24 6.87 -51.93 -0.36 1.88 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -33.49 338.53 -8.50 -41.99 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.59 Total: 2.09 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.63 Total: -9.84 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.51 Total: -36.89 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.68 Total: -22.64 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.21 Total: 20.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.49 -8.50 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.771 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds