Wall clock time and date at job start Tue Mar 31 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47579 * 2 1 4 4 O 1.42901 * 109.47195 * 239.99346 * 2 1 3 5 5 C 1.42903 * 114.00015 * 150.90397 * 4 2 1 6 6 C 1.53003 * 109.47045 * 272.43399 * 5 4 2 7 7 C 1.52996 * 109.47162 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47267 * 59.99864 * 7 6 5 9 9 C 1.53003 * 109.47140 * 300.00149 * 8 7 6 10 10 C 1.52996 * 109.46994 * 152.43229 * 5 4 2 11 11 C 1.50705 * 109.47194 * 119.99802 * 2 1 3 12 12 O 1.21293 * 120.00249 * 114.99553 * 11 2 1 13 13 N 1.34782 * 119.99567 * 295.00040 * 11 2 1 14 14 C 1.37100 * 119.99733 * 179.97438 * 13 11 2 15 15 H 1.07997 * 120.00006 * 227.98505 * 14 13 11 16 16 C 1.38949 * 120.00057 * 47.98561 * 14 13 11 17 17 N 1.31414 * 120.00314 * 193.99222 * 16 14 13 18 18 Si 1.86802 * 120.00140 * 13.98820 * 16 14 13 19 19 H 1.48503 * 109.47444 * 265.53389 * 18 16 14 20 20 H 1.48504 * 109.46759 * 25.53007 * 18 16 14 21 21 H 1.48497 * 109.47405 * 145.52899 * 18 16 14 22 22 C 1.46494 * 120.00256 * 359.97438 * 13 11 2 23 23 C 1.53005 * 117.50095 * 185.41261 * 22 13 11 24 24 C 1.52999 * 117.49840 * 116.79085 * 22 13 11 25 25 H 1.08999 * 109.47185 * 305.60711 * 1 2 3 26 26 H 1.08999 * 109.46799 * 65.60702 * 1 2 3 27 27 H 1.09002 * 109.47211 * 185.61078 * 1 2 3 28 28 H 1.09001 * 109.46848 * 32.43025 * 5 4 2 29 29 H 1.08995 * 109.47074 * 299.99962 * 6 5 4 30 30 H 1.09001 * 109.47324 * 59.99611 * 6 5 4 31 31 H 1.09001 * 109.46828 * 299.99686 * 7 6 5 32 32 H 1.08998 * 109.47501 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47513 * 179.97438 * 8 7 6 34 34 H 1.09005 * 109.47321 * 59.99627 * 8 7 6 35 35 H 1.08995 * 109.47074 * 299.99777 * 9 8 7 36 36 H 1.08998 * 109.47266 * 179.97438 * 9 8 7 37 37 H 1.08992 * 109.47282 * 299.99861 * 10 5 4 38 38 H 1.09002 * 109.46748 * 60.00231 * 10 5 4 39 39 H 0.96995 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.08999 * 115.55088 * 331.12536 * 22 13 11 41 41 H 1.08998 * 117.49367 * 359.97438 * 23 22 13 42 42 H 1.08996 * 117.50125 * 145.01788 * 23 22 13 43 43 H 1.09003 * 117.50149 * 214.98252 * 24 22 13 44 44 H 1.09003 * 117.49728 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 3.2756 -0.2079 -1.6294 6 6 3.0697 0.9726 -2.5808 7 6 4.4286 1.4718 -3.0757 8 6 5.1492 0.3417 -3.8137 9 6 5.3551 -0.8388 -2.8623 10 6 3.9955 -1.3383 -2.3676 11 6 2.0324 -0.7104 1.2305 12 8 2.6530 -1.7468 1.1216 13 7 1.7919 -0.1940 2.4520 14 6 2.2484 -0.8405 3.5715 15 1 1.5850 -1.0069 4.4073 16 6 3.5647 -1.2817 3.6308 17 7 3.9318 -2.1305 4.5645 18 14 4.8124 -0.6685 2.3832 19 1 4.9011 -1.6322 1.2569 20 1 4.3863 0.6574 1.8677 21 1 6.1417 -0.5429 3.0331 22 6 1.0427 1.0580 2.5836 23 6 0.9114 1.6589 3.9845 24 6 -0.2994 1.0045 3.3162 25 1 -0.3633 0.5983 0.8355 26 1 -0.3633 0.4244 -0.9359 27 1 -0.3634 -1.0228 0.1005 28 1 3.8775 0.1117 -0.7787 29 1 2.4678 0.6530 -3.4314 30 1 2.5567 1.7778 -2.0549 31 1 5.0301 1.7915 -2.2248 32 1 4.2820 2.3130 -3.7531 33 1 6.1171 0.6974 -4.1667 34 1 4.5476 0.0219 -4.6646 35 1 5.9566 -0.5190 -2.0115 36 1 5.8680 -1.6440 -3.3882 37 1 4.1422 -2.1792 -1.6899 38 1 3.3936 -1.6578 -3.2183 39 1 4.8506 -2.4387 4.6056 40 1 1.1313 1.7491 1.7454 41 1 1.3821 1.1224 4.8083 42 1 0.9138 2.7456 4.0683 43 1 -1.0937 1.6607 2.9603 44 1 -0.6251 0.0376 3.7000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074531962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:44 Heat of formation + Delta-G solvation = -80.827366 kcal Electronic energy + Delta-G solvation = -24028.611709 eV Core-core repulsion = 20752.865472 eV Total energy + Delta-G solvation = -3275.746236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38577 -39.91509 -38.15667 -37.31003 -34.95993 -33.68588 -32.57615 -31.75679 -30.17486 -27.30753 -24.95297 -23.65964 -23.37481 -23.15961 -22.72429 -21.28650 -20.81214 -19.07906 -18.06189 -17.97622 -17.26142 -16.53080 -16.14994 -15.87701 -15.38557 -15.32705 -15.26109 -15.00671 -14.63654 -14.42150 -14.29918 -13.74678 -13.59581 -13.30226 -13.19835 -13.11391 -12.86397 -12.67252 -12.38411 -12.23721 -12.15973 -12.11269 -11.99196 -11.80926 -11.58634 -11.48881 -11.33536 -11.27142 -10.88570 -10.77877 -9.96990 -9.35465 -8.48165 -6.29251 1.08350 1.19315 1.36320 1.81482 2.29733 2.36283 2.76592 2.92403 3.17030 3.67644 3.68780 3.78882 3.86422 3.96990 4.07001 4.10484 4.15035 4.19878 4.23871 4.30854 4.32230 4.48554 4.50178 4.64042 4.74697 4.84623 4.89734 4.90091 4.97695 5.01035 5.06237 5.13450 5.17799 5.22694 5.25341 5.26889 5.33231 5.44833 5.48325 5.65074 5.81726 6.13963 6.72721 6.87043 7.26802 7.82201 8.60847 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.007137 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.851033 B = 3922.030607 C = 4816.521529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.094 0.906 4 O -0.370 6.370 5 C 0.083 3.917 6 C -0.132 4.132 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.118 4.118 10 C -0.115 4.115 11 C 0.428 3.572 12 O -0.583 6.583 13 N -0.453 5.453 14 C -0.326 4.326 15 H 0.067 0.933 16 C 0.041 3.959 17 N -0.915 5.915 18 Si 0.954 3.046 19 H -0.286 1.286 20 H -0.262 1.262 21 H -0.299 1.299 22 C 0.035 3.965 23 C -0.172 4.172 24 C -0.172 4.172 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.045 0.955 28 H 0.021 0.979 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.083 0.917 39 H 0.272 0.728 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 13.445 -15.889 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.019 3.981 3 H 0.112 0.888 4 O -0.288 6.288 5 C 0.025 3.975 6 C -0.169 4.169 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.153 4.153 11 C 0.219 3.781 12 O -0.466 6.466 13 N -0.176 5.176 14 C -0.453 4.453 15 H 0.085 0.915 16 C -0.162 4.162 17 N -0.553 5.553 18 Si 0.784 3.216 19 H -0.213 1.213 20 H -0.186 1.186 21 H -0.228 1.228 22 C -0.069 4.069 23 C -0.209 4.209 24 C -0.211 4.211 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.163 0.837 41 H 0.093 0.907 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.663 12.672 -15.948 20.696 hybrid contribution 1.128 -0.654 0.693 1.476 sum -2.535 12.018 -15.255 19.585 Atomic orbital electron populations 1.21906 0.88899 1.03227 1.05294 1.22123 0.98199 0.95004 0.82755 0.88808 1.87930 1.35926 1.63145 1.41786 1.22301 0.84039 0.95767 0.95388 1.22029 0.99097 0.96358 0.99438 1.21552 0.94830 0.98843 1.00355 1.21558 1.01547 0.94248 0.97799 1.21563 0.94956 0.99640 0.99395 1.21568 0.97276 0.96697 0.99732 1.22193 0.82857 0.86372 0.86709 1.90517 1.43377 1.26389 1.86344 1.43371 1.49949 1.20110 1.04166 1.18537 0.94767 1.36307 0.95711 0.91549 1.25932 0.99523 0.94165 0.96602 1.69788 1.19180 1.30232 1.36091 0.85619 0.77573 0.78735 0.79658 1.21337 1.18598 1.22779 1.22259 0.97660 0.88666 0.98323 1.23220 1.01677 1.01009 0.95040 1.23357 0.91685 1.02285 1.03750 0.88133 0.88241 0.93566 0.96120 0.89715 0.90961 0.93061 0.88866 0.90078 0.90375 0.93729 0.90089 0.94997 0.89838 0.91897 0.83719 0.90747 0.85296 0.84364 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.25 71.98 0.67 -3.12 16 2 C 0.08 2.92 2.12 29.85 0.06 2.98 16 3 H 0.09 2.89 6.57 -2.39 -0.02 2.87 16 4 O -0.37 -14.10 9.18 -129.99 -1.19 -15.30 16 5 C 0.08 2.79 2.39 30.59 0.07 2.87 16 6 C -0.13 -3.05 5.48 30.59 0.17 -2.89 16 7 C -0.12 -2.27 5.92 30.59 0.18 -2.09 16 8 C -0.11 -2.11 5.92 30.59 0.18 -1.93 16 9 C -0.12 -2.99 5.93 30.61 0.18 -2.80 16 10 C -0.12 -3.71 5.58 30.61 0.17 -3.54 16 11 C 0.43 21.00 5.14 87.66 0.45 21.46 16 12 O -0.58 -34.90 12.49 15.92 0.20 -34.70 16 13 N -0.45 -21.78 2.42 -613.13 -1.49 -23.27 16 14 C -0.33 -18.98 8.18 84.04 0.69 -18.30 16 15 H 0.07 4.13 7.70 -2.91 -0.02 4.11 16 16 C 0.04 2.55 4.98 84.93 0.42 2.97 16 17 N -0.91 -59.32 13.96 21.66 0.30 -59.01 16 18 Si 0.95 52.74 24.76 68.60 1.70 54.44 16 19 H -0.29 -17.13 6.49 99.48 0.65 -16.49 16 20 H -0.26 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 22 C 0.03 1.19 4.39 44.99 0.20 1.39 16 23 C -0.17 -5.44 9.82 30.60 0.30 -5.14 16 24 C -0.17 -4.92 9.45 30.59 0.29 -4.63 16 25 H 0.10 2.39 5.07 -2.39 -0.01 2.38 16 26 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.02 0.83 7.81 -2.39 -0.02 0.81 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.52 7.74 -2.39 -0.02 1.50 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.27 16.69 8.31 -92.71 -0.77 15.92 16 40 H 0.15 3.84 6.42 -2.39 -0.02 3.82 16 41 H 0.07 2.97 6.87 -2.39 -0.02 2.95 16 42 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -80.34 338.53 4.45 -75.89 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.90 Total: 14.72 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.03 Total: -12.77 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.18 Total: -82.28 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.99 Total: -50.00 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 1.70 Total: 54.44 kcal Total: -80.34 4.45 -75.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.934 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds