Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47268 * 2 1 4 4 O 1.42904 * 109.46718 * 119.99180 * 2 1 3 5 5 C 1.42897 * 114.00505 * 269.99791 * 4 2 1 6 6 C 1.52999 * 109.47158 * 150.00040 * 5 4 2 7 7 C 1.53002 * 109.47210 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47094 * 300.00348 * 7 6 5 9 9 C 1.52999 * 109.47376 * 59.99754 * 8 7 6 10 10 C 1.53000 * 109.47327 * 270.00499 * 5 4 2 11 11 C 1.50693 * 109.47043 * 239.99406 * 2 1 3 12 12 O 1.21294 * 119.99769 * 249.81434 * 11 2 1 13 13 N 1.34775 * 120.00301 * 69.82211 * 11 2 1 14 14 C 1.37093 * 120.00371 * 185.13926 * 13 11 2 15 15 H 1.07995 * 120.00115 * 325.01372 * 14 13 11 16 16 C 1.38957 * 119.99837 * 145.00907 * 14 13 11 17 17 N 1.31405 * 120.00205 * 4.03521 * 16 14 13 18 18 Si 1.86796 * 119.99687 * 184.03392 * 16 14 13 19 19 H 1.48500 * 109.47387 * 60.00244 * 18 16 14 20 20 H 1.48503 * 109.47214 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47299 * 300.00324 * 18 16 14 22 22 C 1.46506 * 119.99815 * 5.13813 * 13 11 2 23 23 C 1.52996 * 117.49941 * 133.40142 * 22 13 11 24 24 C 1.52993 * 60.00049 * 252.51346 * 23 22 13 25 25 H 1.09003 * 109.47466 * 294.90892 * 1 2 3 26 26 H 1.09000 * 109.46879 * 54.90445 * 1 2 3 27 27 H 1.08997 * 109.47538 * 174.90630 * 1 2 3 28 28 H 1.09003 * 109.46731 * 30.00544 * 5 4 2 29 29 H 1.09003 * 109.46887 * 60.00600 * 6 5 4 30 30 H 1.09000 * 109.47085 * 300.00245 * 6 5 4 31 31 H 1.09003 * 109.46696 * 59.99854 * 7 6 5 32 32 H 1.08993 * 109.46882 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47410 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46825 * 300.00131 * 8 7 6 35 35 H 1.08997 * 109.47318 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46887 * 59.99829 * 9 8 7 37 37 H 1.09003 * 109.46825 * 300.00051 * 10 5 4 38 38 H 1.09004 * 109.46890 * 59.99771 * 10 5 4 39 39 H 0.96999 * 120.00495 * 184.99590 * 17 16 14 40 40 H 1.09000 * 115.54631 * 279.11321 * 22 13 11 41 41 H 1.08999 * 117.50005 * 0.02562 * 23 22 13 42 42 H 1.09002 * 117.49612 * 145.01996 * 23 22 13 43 43 H 1.09007 * 117.49687 * 252.51251 * 24 23 22 44 44 H 1.09000 * 117.51955 * 107.48187 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2001 0.1831 2.2941 6 6 1.9695 -0.6093 3.5825 7 6 2.1764 0.3080 4.7894 8 6 3.6053 0.8546 4.7756 9 6 3.8359 1.6470 3.4872 10 6 3.6292 0.7292 2.2800 11 6 2.0323 -0.7105 -1.2303 12 8 2.5762 -1.7898 -1.1278 13 7 1.8774 -0.1467 -2.4446 14 6 2.2381 -0.8377 -3.5724 15 1 3.0926 -1.4977 -3.5511 16 6 1.5041 -0.6889 -4.7429 17 7 0.5134 0.1729 -4.7921 18 14 1.9257 -1.7141 -6.2463 19 1 1.7878 -3.1556 -5.9172 20 1 1.0015 -1.3687 -7.3561 21 1 3.3237 -1.4328 -6.6612 22 6 1.3235 1.2048 -2.5594 23 6 2.0450 2.1879 -3.4834 24 6 2.1387 2.3551 -1.9655 25 1 -0.3634 0.4328 0.9321 26 1 -0.3633 0.5909 -0.8408 27 1 -0.3634 -1.0235 -0.0912 28 1 1.4938 1.0120 2.2462 29 1 2.6758 -1.4382 3.6305 30 1 0.9513 -0.9983 3.5925 31 1 1.4699 1.1367 4.7411 32 1 2.0126 -0.2566 5.7072 33 1 3.7529 1.5078 5.6356 34 1 4.3118 0.0259 4.8237 35 1 4.8537 2.0368 3.4776 36 1 3.1294 2.4757 3.4390 37 1 4.3354 -0.0998 2.3280 38 1 3.7934 1.2938 1.3621 39 1 -0.0448 0.2257 -5.5836 40 1 0.2373 1.2742 -2.4997 41 1 2.9316 1.8291 -4.0061 42 1 1.4335 2.9043 -4.0319 43 1 1.5888 3.1817 -1.5154 44 1 3.0869 2.1065 -1.4890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074531968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -67.584548 kcal Electronic energy + Delta-G solvation = -23521.886842 eV Core-core repulsion = 20246.714858 eV Total energy + Delta-G solvation = -3275.171985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.44649 -38.45122 -36.43518 -35.64349 -32.98080 -31.51440 -30.78535 -30.58694 -28.98770 -25.34991 -23.57254 -22.53100 -22.07997 -21.36291 -21.16746 -19.88307 -18.90933 -16.90781 -16.53195 -15.84793 -15.28128 -15.10182 -14.65410 -14.44159 -14.13758 -13.89651 -13.85784 -13.30654 -13.09429 -12.85338 -12.58277 -12.21006 -12.02553 -11.81656 -11.65469 -11.40957 -11.13802 -11.08906 -11.05312 -10.80582 -10.69884 -10.53405 -10.52327 -10.41573 -10.33065 -10.13015 -9.65492 -9.40203 -9.08087 -8.76159 -8.16239 -7.56154 -6.26555 -3.92223 3.23162 3.27745 3.32026 3.78137 3.91337 4.24669 4.69945 4.72811 4.74788 4.84726 4.99866 5.09082 5.22254 5.26405 5.37628 5.48496 5.49635 5.50347 5.58794 5.65816 5.74467 5.79148 5.79579 5.92569 5.96739 6.00568 6.07068 6.15936 6.18562 6.21258 6.22465 6.24212 6.33346 6.38415 6.44752 6.65123 6.79042 6.95143 7.18481 7.60231 7.66563 8.25234 8.57377 9.23721 9.42537 10.02900 10.79697 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.004510 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.224700 B = 6207.181836 C = 6491.546408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 H 0.075 0.925 4 O -0.353 6.353 5 C 0.088 3.912 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.116 4.116 10 C -0.143 4.143 11 C 0.469 3.531 12 O -0.562 6.562 13 N -0.425 5.425 14 C -0.309 4.309 15 H 0.091 0.909 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.919 3.081 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.130 3.870 23 C -0.130 4.130 24 C -0.234 4.234 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.267 0.733 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 7.122 13.423 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.093 0.907 4 O -0.271 6.271 5 C 0.030 3.970 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.154 4.154 10 C -0.181 4.181 11 C 0.257 3.743 12 O -0.444 6.444 13 N -0.146 5.146 14 C -0.437 4.437 15 H 0.108 0.892 16 C -0.160 4.160 17 N -0.512 5.512 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.025 3.975 23 C -0.168 4.168 24 C -0.273 4.273 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.767 6.477 13.290 14.804 hybrid contribution -0.019 -0.041 -0.975 0.976 sum 0.748 6.437 12.315 13.916 Atomic orbital electron populations 1.22173 0.94785 1.03302 1.01919 1.22005 0.94376 0.96099 0.86043 0.90744 1.88069 1.86264 1.33893 1.18872 1.22087 0.95330 0.92736 0.86846 1.21567 1.02560 0.98616 0.92554 1.21502 0.96945 0.99145 0.97699 1.21572 0.97076 0.99813 0.97443 1.21502 1.01466 0.98012 0.94378 1.22075 0.98121 0.99759 0.98108 1.19905 0.84099 0.86392 0.83953 1.90536 1.45630 1.22442 1.85782 1.42922 1.56219 1.11123 1.04347 1.19382 1.12944 1.24134 0.87193 0.89171 1.25346 0.95313 0.96140 0.99160 1.69852 1.18164 1.33117 1.30089 0.86126 0.78215 0.80573 0.80520 1.19854 1.21013 1.19993 1.21190 0.94730 0.79608 1.01994 1.22614 1.02566 1.01315 0.90306 1.23601 1.02718 1.02338 0.98616 0.92712 0.90635 0.91777 0.92605 0.91077 0.91400 0.92000 0.91701 0.92168 0.91840 0.91918 0.92079 0.91060 0.91839 0.92315 0.87710 0.89188 0.89711 0.89586 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.36 37.16 0.35 -2.56 16 2 C 0.08 1.52 2.20 -27.89 -0.06 1.46 16 3 H 0.07 1.35 5.43 -51.93 -0.28 1.07 16 4 O -0.35 -6.98 9.18 -54.95 -0.50 -7.48 16 5 C 0.09 1.30 2.40 -26.73 -0.06 1.24 16 6 C -0.12 -1.45 5.57 -26.73 -0.15 -1.60 16 7 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 8 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 9 C -0.12 -1.22 5.92 -26.71 -0.16 -1.37 16 10 C -0.14 -1.96 5.54 -26.71 -0.15 -2.11 16 11 C 0.47 11.96 6.88 -10.99 -0.08 11.88 16 12 O -0.56 -16.64 16.35 -14.17 -0.23 -16.87 16 13 N -0.42 -10.85 2.91 -107.73 -0.31 -11.16 16 14 C -0.31 -8.61 8.59 -14.93 -0.13 -8.74 16 15 H 0.09 2.65 7.59 -52.49 -0.40 2.25 16 16 C 0.04 1.17 5.17 -17.47 -0.09 1.08 16 17 N -0.87 -22.62 10.58 55.50 0.59 -22.03 16 18 Si 0.92 20.92 29.56 -169.99 -5.02 15.89 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 22 C 0.13 2.84 2.65 -67.93 -0.18 2.66 16 23 C -0.13 -2.66 8.74 -26.74 -0.23 -2.89 16 24 C -0.23 -4.20 8.55 -26.74 -0.23 -4.43 16 25 H 0.05 0.79 7.94 -51.93 -0.41 0.38 16 26 H 0.07 1.33 5.85 -51.93 -0.30 1.02 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.76 7.60 -51.93 -0.39 0.36 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 39 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 40 H 0.11 2.32 6.67 -51.93 -0.35 1.97 16 41 H 0.09 2.00 7.96 -51.93 -0.41 1.59 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 44 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -30.85 344.30 -9.37 -40.22 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.59 Total: 4.22 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.49 Total: -7.97 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.27 Total: -33.19 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.74 Total: -24.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -9.37 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.370 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds