Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47268 * 2 1 4 4 O 1.42904 * 109.46718 * 119.99180 * 2 1 3 5 5 C 1.42897 * 114.00505 * 269.99791 * 4 2 1 6 6 C 1.52999 * 109.47158 * 150.00040 * 5 4 2 7 7 C 1.53002 * 109.47210 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47094 * 300.00348 * 7 6 5 9 9 C 1.52999 * 109.47376 * 59.99754 * 8 7 6 10 10 C 1.53000 * 109.47327 * 270.00499 * 5 4 2 11 11 C 1.50693 * 109.47043 * 239.99406 * 2 1 3 12 12 O 1.21294 * 119.99769 * 249.81434 * 11 2 1 13 13 N 1.34775 * 120.00301 * 69.82211 * 11 2 1 14 14 C 1.37093 * 120.00371 * 185.13926 * 13 11 2 15 15 H 1.07995 * 120.00115 * 325.01372 * 14 13 11 16 16 C 1.38957 * 119.99837 * 145.00907 * 14 13 11 17 17 N 1.31405 * 120.00205 * 4.03521 * 16 14 13 18 18 Si 1.86796 * 119.99687 * 184.03392 * 16 14 13 19 19 H 1.48500 * 109.47387 * 60.00244 * 18 16 14 20 20 H 1.48503 * 109.47214 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47299 * 300.00324 * 18 16 14 22 22 C 1.46506 * 119.99815 * 5.13813 * 13 11 2 23 23 C 1.52996 * 117.49941 * 133.40142 * 22 13 11 24 24 C 1.52993 * 60.00049 * 252.51346 * 23 22 13 25 25 H 1.09003 * 109.47466 * 294.90892 * 1 2 3 26 26 H 1.09000 * 109.46879 * 54.90445 * 1 2 3 27 27 H 1.08997 * 109.47538 * 174.90630 * 1 2 3 28 28 H 1.09003 * 109.46731 * 30.00544 * 5 4 2 29 29 H 1.09003 * 109.46887 * 60.00600 * 6 5 4 30 30 H 1.09000 * 109.47085 * 300.00245 * 6 5 4 31 31 H 1.09003 * 109.46696 * 59.99854 * 7 6 5 32 32 H 1.08993 * 109.46882 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47410 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46825 * 300.00131 * 8 7 6 35 35 H 1.08997 * 109.47318 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46887 * 59.99829 * 9 8 7 37 37 H 1.09003 * 109.46825 * 300.00051 * 10 5 4 38 38 H 1.09004 * 109.46890 * 59.99771 * 10 5 4 39 39 H 0.96999 * 120.00495 * 184.99590 * 17 16 14 40 40 H 1.09000 * 115.54631 * 279.11321 * 22 13 11 41 41 H 1.08999 * 117.50005 * 0.02562 * 23 22 13 42 42 H 1.09002 * 117.49612 * 145.01996 * 23 22 13 43 43 H 1.09007 * 117.49687 * 252.51251 * 24 23 22 44 44 H 1.09000 * 117.51955 * 107.48187 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2001 0.1831 2.2941 6 6 1.9695 -0.6093 3.5825 7 6 2.1764 0.3080 4.7894 8 6 3.6053 0.8546 4.7756 9 6 3.8359 1.6470 3.4872 10 6 3.6292 0.7292 2.2800 11 6 2.0323 -0.7105 -1.2303 12 8 2.5762 -1.7898 -1.1278 13 7 1.8774 -0.1467 -2.4446 14 6 2.2381 -0.8377 -3.5724 15 1 3.0926 -1.4977 -3.5511 16 6 1.5041 -0.6889 -4.7429 17 7 0.5134 0.1729 -4.7921 18 14 1.9257 -1.7141 -6.2463 19 1 1.7878 -3.1556 -5.9172 20 1 1.0015 -1.3687 -7.3561 21 1 3.3237 -1.4328 -6.6612 22 6 1.3235 1.2048 -2.5594 23 6 2.0450 2.1879 -3.4834 24 6 2.1387 2.3551 -1.9655 25 1 -0.3634 0.4328 0.9321 26 1 -0.3633 0.5909 -0.8408 27 1 -0.3634 -1.0235 -0.0912 28 1 1.4938 1.0120 2.2462 29 1 2.6758 -1.4382 3.6305 30 1 0.9513 -0.9983 3.5925 31 1 1.4699 1.1367 4.7411 32 1 2.0126 -0.2566 5.7072 33 1 3.7529 1.5078 5.6356 34 1 4.3118 0.0259 4.8237 35 1 4.8537 2.0368 3.4776 36 1 3.1294 2.4757 3.4390 37 1 4.3354 -0.0998 2.3280 38 1 3.7934 1.2938 1.3621 39 1 -0.0448 0.2257 -5.5836 40 1 0.2373 1.2742 -2.4997 41 1 2.9316 1.8291 -4.0061 42 1 1.4335 2.9043 -4.0319 43 1 1.5888 3.1817 -1.5154 44 1 3.0869 2.1065 -1.4890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074531968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = -84.435365 kcal Electronic energy + Delta-G solvation = -23522.617548 eV Core-core repulsion = 20246.714858 eV Total energy + Delta-G solvation = -3275.902691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04736 -39.82796 -37.99220 -37.20528 -34.91302 -33.29158 -32.21015 -31.67863 -30.12480 -27.29399 -25.16862 -23.49484 -23.32585 -22.99269 -22.64891 -21.02958 -20.50806 -18.78308 -18.03201 -17.48134 -16.98422 -16.65122 -16.13547 -15.80672 -15.62864 -15.20211 -15.09440 -14.79718 -14.48762 -14.28838 -13.82291 -13.65273 -13.41034 -13.15511 -13.07603 -12.95915 -12.79820 -12.71307 -12.49194 -12.24374 -12.13429 -12.03135 -11.88940 -11.48948 -11.46594 -11.39454 -11.16745 -11.08664 -10.65049 -10.41211 -10.06762 -9.55779 -8.28981 -6.02642 1.37665 1.39754 1.47801 1.99382 2.18753 2.52171 3.00344 3.16968 3.24320 3.76839 3.82385 3.88700 4.05701 4.09030 4.20725 4.21119 4.28875 4.32745 4.37965 4.39053 4.55202 4.58240 4.61484 4.68782 4.72335 4.80672 4.84036 4.99896 5.09837 5.13433 5.15226 5.21632 5.25146 5.27481 5.32490 5.39459 5.42529 5.44579 5.49972 5.54351 6.13184 6.33671 6.62293 7.20307 7.44876 8.04961 8.73990 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.004510 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.224700 B = 6207.181836 C = 6491.546408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 H 0.096 0.904 4 O -0.386 6.386 5 C 0.079 3.921 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.143 4.143 11 C 0.448 3.552 12 O -0.623 6.623 13 N -0.430 5.430 14 C -0.349 4.349 15 H 0.057 0.943 16 C 0.020 3.980 17 N -0.874 5.874 18 Si 0.974 3.026 19 H -0.284 1.284 20 H -0.266 1.266 21 H -0.271 1.271 22 C 0.104 3.896 23 C -0.136 4.136 24 C -0.192 4.192 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.273 0.727 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 9.799 14.764 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 H 0.113 0.887 4 O -0.305 6.305 5 C 0.022 3.978 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.159 4.159 9 C -0.147 4.147 10 C -0.181 4.181 11 C 0.237 3.763 12 O -0.509 6.509 13 N -0.150 5.150 14 C -0.476 4.476 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.511 5.511 18 Si 0.798 3.202 19 H -0.210 1.210 20 H -0.190 1.190 21 H -0.196 1.196 22 C 0.000 4.000 23 C -0.174 4.174 24 C -0.230 4.230 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.383 9.212 14.628 17.292 hybrid contribution 0.349 -0.883 -1.410 1.700 sum -0.034 8.329 13.218 15.623 Atomic orbital electron populations 1.22131 0.92862 1.02297 1.04081 1.21791 0.95488 0.95774 0.83909 0.88655 1.88049 1.86554 1.36019 1.19888 1.22450 0.96291 0.93139 0.85888 1.21604 1.02049 0.98673 0.92904 1.21496 0.97432 0.99084 0.96586 1.21593 0.96732 0.99868 0.97683 1.21491 1.02484 0.97665 0.93099 1.22072 0.97098 0.99546 0.99381 1.21003 0.83332 0.86219 0.85703 1.90475 1.48339 1.25212 1.86916 1.43112 1.55381 1.12575 1.03893 1.19265 1.13464 1.25747 0.89166 0.92546 1.25897 0.95080 0.96718 1.00734 1.69901 1.17810 1.32609 1.30758 0.85316 0.78556 0.78405 0.77935 1.20991 1.18987 1.19575 1.21269 0.94999 0.78593 1.05162 1.22576 1.01591 1.01234 0.91994 1.23641 1.01810 1.00858 0.96703 0.88733 0.90429 0.94069 0.90497 0.92871 0.91387 0.90495 0.90148 0.89785 0.92687 0.91099 0.90524 0.93340 0.93123 0.91744 0.87781 0.91863 0.88089 0.85053 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 9.36 71.98 0.67 -4.66 16 2 C 0.09 3.64 2.20 29.85 0.07 3.70 16 3 H 0.10 3.31 5.43 -2.39 -0.01 3.30 16 4 O -0.39 -15.46 9.18 -130.13 -1.20 -16.66 16 5 C 0.08 2.25 2.40 30.59 0.07 2.32 16 6 C -0.11 -2.74 5.57 30.59 0.17 -2.57 16 7 C -0.11 -1.77 5.92 30.59 0.18 -1.59 16 8 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 9 C -0.11 -2.02 5.92 30.61 0.18 -1.84 16 10 C -0.14 -3.83 5.54 30.61 0.17 -3.66 16 11 C 0.45 23.79 6.88 87.66 0.60 24.39 16 12 O -0.62 -39.34 16.35 15.78 0.26 -39.08 16 13 N -0.43 -22.64 2.91 -613.15 -1.78 -24.42 16 14 C -0.35 -20.31 8.59 84.04 0.72 -19.59 16 15 H 0.06 3.58 7.59 -2.91 -0.02 3.56 16 16 C 0.02 1.06 5.17 84.93 0.44 1.50 16 17 N -0.87 -44.90 10.58 21.66 0.23 -44.67 16 18 Si 0.97 43.41 29.56 68.60 2.03 45.44 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 C 0.10 4.46 2.65 44.99 0.12 4.58 16 23 C -0.14 -5.41 8.74 30.59 0.27 -5.14 16 24 C -0.19 -6.40 8.55 30.59 0.26 -6.14 16 25 H 0.09 2.45 7.94 -2.39 -0.02 2.43 16 26 H 0.08 2.60 5.85 -2.39 -0.01 2.59 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.84 7.60 -2.39 -0.02 1.82 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.45 7.96 -2.38 -0.02 1.43 16 39 H 0.27 13.23 8.32 -92.71 -0.77 12.45 16 40 H 0.10 4.47 6.67 -2.39 -0.02 4.46 16 41 H 0.06 2.84 7.96 -2.39 -0.02 2.82 16 42 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.13 3.26 8.14 -2.38 -0.02 3.24 16 44 H 0.08 2.70 7.94 -2.39 -0.02 2.68 16 Total: -1.00 -71.45 344.30 4.60 -66.85 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.96 Total: 23.00 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.11 Total: -10.46 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.56 Total: -69.09 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -0.94 Total: -55.74 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -71.45 4.60 -66.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.583 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds