Wall clock time and date at job start Tue Mar 31 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46889 * 2 1 4 4 O 1.42911 * 109.46775 * 240.00586 * 2 1 3 5 5 C 1.42890 * 113.99889 * 89.99844 * 4 2 1 6 6 C 1.53007 * 109.46803 * 179.97438 * 5 4 2 7 7 C 1.53002 * 117.49595 * 243.62198 * 6 5 4 8 8 C 1.53002 * 60.00061 * 252.51152 * 7 6 5 9 9 C 1.50697 * 109.47167 * 120.00773 * 2 1 3 10 10 O 1.21284 * 120.00437 * 105.37051 * 9 2 1 11 11 N 1.34779 * 119.99419 * 285.36363 * 9 2 1 12 12 C 1.37092 * 120.00190 * 2.58720 * 11 9 2 13 13 H 1.08003 * 119.99813 * 117.48614 * 12 11 9 14 14 C 1.38949 * 120.00490 * 297.48763 * 12 11 9 15 15 N 1.31409 * 120.00146 * 163.00173 * 14 12 11 16 16 Si 1.86803 * 119.99739 * 343.00933 * 14 12 11 17 17 H 1.48493 * 109.47464 * 95.30562 * 16 14 12 18 18 H 1.48501 * 109.47016 * 215.30847 * 16 14 12 19 19 H 1.48506 * 109.46914 * 335.30419 * 16 14 12 20 20 C 1.46504 * 119.99646 * 182.58822 * 11 9 2 21 21 C 1.54266 * 110.02995 * 237.91137 * 20 11 9 22 22 C 1.54967 * 104.15806 * 217.13603 * 21 20 11 23 23 C 1.54889 * 102.77535 * 37.88902 * 22 21 20 24 24 C 1.53864 * 110.03129 * 120.69190 * 20 11 9 25 25 H 1.08997 * 109.47039 * 176.91898 * 1 2 3 26 26 H 1.08994 * 109.46843 * 296.91897 * 1 2 3 27 27 H 1.08998 * 109.47175 * 56.91853 * 1 2 3 28 28 H 1.09004 * 109.47436 * 60.00028 * 5 4 2 29 29 H 1.09000 * 109.47536 * 299.99807 * 5 4 2 30 30 H 1.08996 * 115.55247 * 29.33094 * 6 5 4 31 31 H 1.08996 * 117.50354 * 0.02562 * 7 6 5 32 32 H 1.08999 * 117.49705 * 145.02018 * 7 6 5 33 33 H 1.09006 * 117.49743 * 252.51154 * 8 7 6 34 34 H 1.08994 * 117.49781 * 107.49212 * 8 7 6 35 35 H 0.97005 * 119.99582 * 180.02562 * 15 14 12 36 36 H 1.09001 * 110.01507 * 359.29807 * 20 11 9 37 37 H 1.09005 * 110.48460 * 335.77901 * 21 20 11 38 38 H 1.08991 * 110.49094 * 98.42518 * 21 20 11 39 39 H 1.08994 * 110.72032 * 279.57331 * 22 21 20 40 40 H 1.09001 * 110.92284 * 156.29424 * 22 21 20 41 41 H 1.09005 * 110.48238 * 203.40234 * 23 22 21 42 42 H 1.08997 * 110.60534 * 80.81929 * 23 22 21 43 43 H 1.08997 * 110.03551 * 238.56538 * 24 20 11 44 44 H 1.09000 * 110.03681 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1670 5 6 2.2000 0.1830 -2.2941 6 6 2.7089 -0.6404 -3.4790 7 6 4.1059 -0.3195 -4.0142 8 6 2.8678 0.0765 -4.8212 9 6 2.0324 -0.7106 1.2303 10 8 2.4970 -1.8271 1.1387 11 7 1.9654 -0.1051 2.4326 12 6 1.3921 1.1351 2.5446 13 1 0.5077 1.2686 3.1499 14 6 1.9488 2.2206 1.8793 15 7 1.2438 3.3155 1.7035 16 14 3.6994 2.1232 1.2347 17 1 3.6791 1.7184 -0.1939 18 1 4.3489 3.4524 1.3634 19 1 4.4619 1.1214 2.0223 20 6 2.5053 -0.7725 3.6199 21 6 1.3998 -0.9345 4.6835 22 6 2.1320 -0.7032 6.0295 23 6 3.1312 0.4292 5.6857 24 6 3.6059 0.0939 4.2566 25 1 -0.3633 -1.0262 -0.0552 26 1 -0.3633 0.4652 0.9163 27 1 -0.3633 0.5609 -0.8611 28 1 2.9319 0.9515 -2.0450 29 1 1.2537 0.6548 -2.5588 30 1 2.3888 -1.6821 -3.4996 31 1 4.6625 0.4780 -3.5220 32 1 4.7051 -1.1501 -4.3869 33 1 2.6526 -0.4937 -5.7250 34 1 2.6098 1.1348 -4.8602 35 1 1.6324 4.0731 1.2387 36 1 2.9082 -1.7482 3.3485 37 1 0.6199 -0.1865 4.5402 38 1 0.9780 -1.9388 4.6455 39 1 2.6610 -1.6039 6.3405 40 1 1.4339 -0.3809 6.8021 41 1 3.9722 0.4195 6.3792 42 1 2.6336 1.3988 5.7046 43 1 4.5429 -0.4617 4.2953 44 1 3.7382 1.0110 3.6827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078207759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:49 Heat of formation + Delta-G solvation = -71.302630 kcal Electronic energy + Delta-G solvation = -23767.002984 eV Core-core repulsion = 20491.669772 eV Total energy + Delta-G solvation = -3275.333213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35284 -39.52869 -38.44129 -37.35733 -36.10868 -33.78819 -32.25606 -29.55687 -28.76564 -28.11763 -26.68284 -24.93747 -23.32996 -21.91301 -21.70582 -21.34829 -20.86552 -19.09598 -18.22112 -17.59915 -17.18828 -16.67918 -16.44631 -16.16639 -15.83124 -15.71603 -15.36421 -14.99899 -14.60678 -14.27272 -13.98248 -13.94159 -13.53143 -13.22086 -13.17498 -12.98778 -12.81444 -12.53479 -12.44051 -12.36765 -12.12381 -11.91336 -11.84465 -11.66421 -11.44450 -11.37207 -11.29387 -11.19973 -10.99883 -10.67855 -10.25965 -9.36408 -8.53649 -6.37432 1.07701 1.20521 1.31267 1.71133 2.07129 2.11530 2.75860 2.80161 3.08200 3.76384 3.82119 3.85462 3.86600 3.95171 4.06661 4.13014 4.16584 4.21048 4.26952 4.45604 4.56622 4.58737 4.64816 4.69171 4.72665 4.73454 4.82170 4.86099 4.91302 4.92783 5.03125 5.14316 5.14840 5.18705 5.22602 5.28850 5.39884 5.43526 5.57592 5.70078 5.93437 6.14438 6.41000 6.96658 7.28314 7.75657 8.57115 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.005924 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.500882 B = 4725.536640 C = 5051.648653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.078 0.922 4 O -0.384 6.384 5 C 0.082 3.918 6 C -0.173 4.173 7 C -0.184 4.184 8 C -0.146 4.146 9 C 0.488 3.512 10 O -0.604 6.604 11 N -0.466 5.466 12 C -0.326 4.326 13 H 0.085 0.915 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.865 3.135 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.253 1.253 20 C 0.118 3.882 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.137 4.137 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.280 0.720 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -2.517 -2.964 4.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.096 0.904 4 O -0.303 6.303 5 C 0.006 3.994 6 C -0.191 4.191 7 C -0.221 4.221 8 C -0.182 4.182 9 C 0.277 3.723 10 O -0.489 6.489 11 N -0.189 5.189 12 C -0.454 4.454 13 H 0.102 0.898 14 C -0.143 4.143 15 N -0.514 5.514 16 Si 0.691 3.309 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.177 1.177 20 C 0.016 3.984 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.175 4.175 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.189 -3.052 -3.055 4.842 hybrid contribution 0.876 0.669 -0.372 1.164 sum 3.065 -2.383 -3.427 5.179 Atomic orbital electron populations 1.21912 0.92083 1.02132 1.04006 1.21900 0.96819 0.95684 0.84060 0.90436 1.87903 1.86982 1.35546 1.19900 1.22281 0.99544 0.92163 0.85449 1.22096 1.02039 1.00899 0.94079 1.23157 0.90863 1.03925 1.04187 1.23093 1.00083 1.01568 0.93502 1.20974 0.79380 0.85569 0.86348 1.90501 1.50082 1.21139 1.87158 1.43789 1.53320 1.16956 1.04842 1.18547 1.10349 0.82731 1.33799 0.89759 1.25854 0.97979 0.94973 0.95522 1.69720 1.36942 1.05315 1.39441 0.87224 0.85334 0.78720 0.79616 1.19972 1.19925 1.17706 1.21959 0.94665 0.95495 0.86330 1.22587 0.97681 1.01165 0.94600 1.22404 0.97805 0.98612 0.95760 1.22239 0.99283 0.98913 0.94381 1.22577 0.97346 0.99772 0.97808 0.92356 0.90094 0.90841 0.94901 0.91646 0.87135 0.89669 0.87151 0.85943 0.87940 0.90975 0.91545 0.91626 0.91816 0.90280 0.89965 0.89981 0.92345 0.91989 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 9.41 71.98 0.68 -5.23 16 2 C 0.08 3.53 2.01 29.85 0.06 3.59 16 3 H 0.08 3.77 3.00 -2.39 -0.01 3.76 16 4 O -0.38 -17.42 9.56 -130.36 -1.25 -18.67 16 5 C 0.08 2.99 6.03 71.98 0.43 3.43 16 6 C -0.17 -5.10 6.06 -10.79 -0.07 -5.17 16 7 C -0.18 -4.64 10.18 30.60 0.31 -4.33 16 8 C -0.15 -3.10 10.25 30.60 0.31 -2.79 16 9 C 0.49 24.89 5.69 87.66 0.50 25.39 16 10 O -0.60 -33.75 15.91 15.57 0.25 -33.50 16 11 N -0.47 -22.34 1.70 -609.40 -1.04 -23.38 16 12 C -0.33 -16.08 6.09 84.04 0.51 -15.57 16 13 H 0.08 4.42 7.12 -2.91 -0.02 4.40 16 14 C 0.06 3.16 4.20 84.93 0.36 3.52 16 15 N -0.88 -45.32 13.96 21.66 0.30 -45.02 16 16 Si 0.87 40.69 23.55 68.60 1.62 42.31 16 17 H -0.27 -12.91 5.58 99.48 0.56 -12.35 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.25 -12.14 5.62 99.48 0.56 -11.58 16 20 C 0.12 5.00 3.29 45.71 0.15 5.16 16 21 C -0.12 -4.31 6.42 31.70 0.20 -4.11 16 22 C -0.11 -3.00 6.91 31.91 0.22 -2.78 16 23 C -0.11 -3.40 6.83 31.67 0.22 -3.18 16 24 C -0.14 -5.27 5.95 31.32 0.19 -5.09 16 25 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.08 3.53 6.63 -2.39 -0.02 3.52 16 27 H 0.07 2.64 7.94 -2.39 -0.02 2.63 16 28 H 0.03 1.27 6.83 -2.38 -0.02 1.25 16 29 H 0.07 2.15 7.94 -2.39 -0.02 2.13 16 30 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 32 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.28 13.64 8.31 -92.70 -0.77 12.87 16 36 H 0.07 2.98 6.94 -2.39 -0.02 2.96 16 37 H 0.07 2.53 6.49 -2.38 -0.02 2.52 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.05 2.42 4.02 -2.39 -0.01 2.41 16 Total: -1.00 -61.00 335.11 4.63 -56.37 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.68 Total: 29.04 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.07 Total: -7.15 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -0.74 Total: -68.40 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.00 Total: -52.17 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.62 Total: 42.31 kcal Total: -61.00 4.63 -56.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.936 kcal (2) G-P(sol) polarization free energy of solvation -61.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds