Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46841 * 2 1 4 4 O 1.42897 * 109.47222 * 119.99791 * 2 1 3 5 5 C 1.42896 * 114.00309 * 270.00430 * 4 2 1 6 6 C 1.53005 * 109.47477 * 180.02562 * 5 4 2 7 7 C 1.52995 * 117.49814 * 243.74776 * 6 5 4 8 8 C 1.53002 * 117.50098 * 175.08566 * 6 5 4 9 9 C 1.50701 * 109.47244 * 240.00405 * 2 1 3 10 10 O 1.21294 * 119.99721 * 249.83673 * 9 2 1 11 11 N 1.34770 * 120.00222 * 69.84029 * 9 2 1 12 12 C 1.37094 * 120.00409 * 185.32330 * 11 9 2 13 13 H 1.08001 * 120.00631 * 221.44910 * 12 11 9 14 14 C 1.38949 * 119.99708 * 41.43905 * 12 11 9 15 15 N 1.31413 * 120.00145 * 18.07253 * 14 12 11 16 16 Si 1.86807 * 120.00080 * 198.07482 * 14 12 11 17 17 H 1.48499 * 109.47148 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47321 * 120.00336 * 16 14 12 19 19 H 1.48506 * 109.46911 * 240.00084 * 16 14 12 20 20 C 1.46508 * 119.99913 * 5.32624 * 11 9 2 21 21 C 1.54263 * 110.02680 * 237.39844 * 20 11 9 22 22 C 1.54966 * 104.15988 * 217.13588 * 21 20 11 23 23 C 1.54889 * 102.77652 * 37.88592 * 22 21 20 24 24 C 1.53869 * 110.03407 * 120.18264 * 20 11 9 25 25 H 1.09005 * 109.46849 * 174.42232 * 1 2 3 26 26 H 1.09003 * 109.47432 * 294.42240 * 1 2 3 27 27 H 1.08999 * 109.47498 * 54.43241 * 1 2 3 28 28 H 1.09009 * 109.47268 * 299.99979 * 5 4 2 29 29 H 1.09001 * 109.47232 * 60.00014 * 5 4 2 30 30 H 1.09000 * 115.54694 * 29.41295 * 6 5 4 31 31 H 1.09003 * 117.49996 * 0.02562 * 7 6 5 32 32 H 1.09007 * 117.49767 * 145.01634 * 7 6 5 33 33 H 1.08999 * 117.49630 * 214.98086 * 8 6 5 34 34 H 1.09000 * 117.49747 * 0.02562 * 8 6 5 35 35 H 0.96999 * 120.00353 * 184.96154 * 15 14 12 36 36 H 1.09002 * 110.01760 * 358.78300 * 20 11 9 37 37 H 1.09002 * 110.49173 * 335.77897 * 21 20 11 38 38 H 1.09001 * 110.49293 * 98.42990 * 21 20 11 39 39 H 1.09004 * 110.72139 * 279.57554 * 22 21 20 40 40 H 1.08995 * 110.92919 * 156.29624 * 22 21 20 41 41 H 1.08997 * 110.49058 * 203.40614 * 23 22 21 42 42 H 1.09002 * 110.60034 * 80.81802 * 23 22 21 43 43 H 1.09003 * 110.02980 * 238.56765 * 24 20 11 44 44 H 1.08998 * 110.03242 * 359.94403 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7091 -0.6406 3.4789 7 6 1.8124 -0.7282 4.7154 8 6 3.0890 0.1156 4.7536 9 6 2.0324 -0.7103 -1.2305 10 8 2.5759 -1.7898 -1.1281 11 7 1.8778 -0.1461 -2.4446 12 6 2.2350 -0.8384 -3.5728 13 1 2.7489 -0.3325 -4.3768 14 6 1.9360 -2.1909 -3.6817 15 7 1.0244 -2.7273 -2.9018 16 14 2.8301 -3.2470 -4.9367 17 1 3.8013 -2.4100 -5.6860 18 1 3.5531 -4.3402 -4.2385 19 1 1.8460 -3.8304 -5.8836 20 6 1.3280 1.2071 -2.5589 21 6 0.0684 1.1921 -3.4494 22 6 0.1525 2.5179 -4.2473 23 6 1.6686 2.6481 -4.5366 24 6 2.3449 2.1326 -3.2495 25 1 -0.3633 -1.0229 -0.0999 26 1 -0.3634 0.4249 0.9357 27 1 -0.3634 0.5977 -0.8359 28 1 2.9319 0.9514 2.0450 29 1 1.2537 0.6546 2.5589 30 1 3.2984 -1.5205 3.2211 31 1 0.8597 -0.1996 4.6848 32 1 1.8122 -1.6658 5.2715 33 1 3.9281 -0.2671 5.3345 34 1 2.9759 1.1997 4.7482 35 1 0.8663 -3.6840 -2.9272 36 1 1.0817 1.5945 -1.5703 37 1 0.0897 0.3379 -4.1261 38 1 -0.8323 1.1717 -2.8360 39 1 -0.1986 3.3546 -3.6432 40 1 -0.4135 2.4498 -5.1762 41 1 1.9347 3.6896 -4.7165 42 1 1.9507 2.0305 -5.3893 43 1 2.5916 2.9697 -2.5964 44 1 3.2479 1.5752 -3.4988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078207761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = -51.461348 kcal Electronic energy + Delta-G solvation = -23491.297487 eV Core-core repulsion = 20216.824657 eV Total energy + Delta-G solvation = -3274.472830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.21876 -38.01126 -36.82400 -35.84519 -33.17757 -31.86240 -30.36994 -28.06416 -26.89630 -26.69843 -25.04213 -22.70579 -22.36660 -20.63118 -20.09441 -19.80172 -19.20918 -16.77188 -16.30100 -15.93088 -15.33663 -14.96830 -14.76040 -14.60598 -14.19040 -13.87488 -13.55806 -13.17711 -12.79802 -12.71336 -12.16819 -12.07219 -11.62832 -11.57693 -11.34436 -11.26467 -10.96363 -10.83108 -10.70974 -10.59608 -10.53916 -10.41563 -10.38800 -10.38547 -10.18062 -10.08698 -10.02525 -9.74628 -9.13920 -8.65660 -7.84235 -7.02189 -6.01974 -3.76570 3.35802 3.45359 3.47527 3.65388 3.99733 4.26203 4.46532 4.82709 4.91722 4.97999 5.17184 5.22452 5.23377 5.40058 5.40740 5.44369 5.54182 5.57098 5.67086 5.77403 5.80276 5.86111 5.89949 5.93122 6.04409 6.06879 6.13497 6.17694 6.23041 6.25730 6.32835 6.33506 6.43899 6.47892 6.61469 6.77381 6.83732 6.96420 7.20159 7.65912 7.74571 8.36335 9.14059 9.30226 9.74685 10.39658 11.05641 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.005839 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.659225 B = 4794.298953 C = 6016.021748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 H 0.061 0.939 4 O -0.352 6.352 5 C 0.090 3.910 6 C -0.146 4.146 7 C -0.178 4.178 8 C -0.177 4.177 9 C 0.484 3.516 10 O -0.517 6.517 11 N -0.449 5.449 12 C -0.333 4.333 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.832 5.832 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.287 1.287 20 C 0.126 3.874 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 10.881 7.055 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 H 0.078 0.922 4 O -0.270 6.270 5 C 0.013 3.987 6 C -0.165 4.165 7 C -0.215 4.215 8 C -0.214 4.214 9 C 0.270 3.730 10 O -0.393 6.393 11 N -0.173 5.173 12 C -0.460 4.460 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.467 5.467 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.214 1.214 20 C 0.021 3.979 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.171 4.171 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.269 9.931 7.135 12.294 hybrid contribution 0.199 -0.253 -0.471 0.571 sum -1.070 9.678 6.664 11.799 Atomic orbital electron populations 1.22223 0.94942 1.03955 1.01062 1.22047 0.94386 0.95246 0.86969 0.92162 1.88070 1.86564 1.33604 1.18730 1.22001 0.98270 0.92164 0.86281 1.22145 1.03610 1.02358 0.88339 1.23049 0.94805 1.01925 1.01766 1.22960 0.99213 0.98657 1.00593 1.19521 0.83160 0.87405 0.82964 1.90523 1.42890 1.21028 1.84851 1.43305 1.57138 1.12412 1.04435 1.18845 1.37827 0.92772 0.96539 0.90362 1.25141 0.93946 0.98273 0.96705 1.69863 1.27051 1.11911 1.37831 0.86302 0.79621 0.80693 0.80362 1.19687 1.20809 1.21401 1.21779 0.92712 0.85971 0.97480 1.22687 0.96665 0.97990 0.99048 1.22455 0.96249 0.97835 0.99552 1.22254 0.95373 0.99477 0.98348 1.22487 1.00024 0.98203 0.96418 0.90943 0.93290 0.91105 0.93409 0.93750 0.86686 0.88828 0.88780 0.88617 0.88872 0.92729 0.91553 0.88944 0.92925 0.92549 0.92299 0.92917 0.91564 0.92980 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.08 1.56 2.27 -27.88 -0.06 1.50 16 3 H 0.06 1.09 6.66 -51.93 -0.35 0.75 16 4 O -0.35 -7.45 9.54 -54.94 -0.52 -7.97 16 5 C 0.09 1.41 6.03 37.16 0.22 1.63 16 6 C -0.15 -2.05 6.05 -90.62 -0.55 -2.60 16 7 C -0.18 -2.05 10.18 -26.69 -0.27 -2.32 16 8 C -0.18 -1.89 10.26 -26.69 -0.27 -2.16 16 9 C 0.48 12.62 6.17 -10.99 -0.07 12.56 16 10 O -0.52 -16.06 14.33 -14.17 -0.20 -16.26 16 11 N -0.45 -10.99 2.46 -106.54 -0.26 -11.25 16 12 C -0.33 -8.94 7.38 -14.94 -0.11 -9.05 16 13 H 0.08 2.04 7.21 -52.49 -0.38 1.66 16 14 C 0.07 1.94 4.40 -17.47 -0.08 1.87 16 15 N -0.83 -24.73 11.63 55.50 0.65 -24.09 16 16 Si 0.90 22.11 29.59 -169.99 -5.03 17.08 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.13 2.42 2.39 -66.81 -0.16 2.26 16 21 C -0.13 -2.28 6.24 -25.03 -0.16 -2.43 16 22 C -0.12 -1.79 6.91 -24.70 -0.17 -1.96 16 23 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 24 C -0.13 -2.26 6.20 -25.62 -0.16 -2.42 16 25 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 26 H 0.05 0.75 7.78 -51.93 -0.40 0.35 16 27 H 0.07 1.24 5.25 -51.93 -0.27 0.97 16 28 H 0.05 0.69 8.09 -51.92 -0.42 0.27 16 29 H 0.04 0.61 7.51 -51.93 -0.39 0.23 16 30 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 32 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 36 H 0.07 1.16 4.65 -51.93 -0.24 0.92 16 37 H 0.09 2.00 7.01 -51.93 -0.36 1.64 16 38 H 0.05 0.90 7.32 -51.93 -0.38 0.52 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -32.97 345.64 -9.17 -42.14 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.34 Total: 2.90 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.66 Total: -7.76 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.38 Total: -35.34 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.73 Total: -24.23 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.97 -9.17 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.318 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds