Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99809 * 2 1 4 4 C 1.52995 * 109.47243 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47237 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46874 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46727 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46875 * 179.97438 * 7 6 5 9 9 C 1.46899 * 111.00107 * 190.00314 * 8 7 6 10 10 C 1.50702 * 109.47363 * 71.54253 * 9 8 7 11 11 H 1.07998 * 120.00098 * 3.98911 * 10 9 8 12 12 C 1.37879 * 119.99918 * 183.98338 * 10 9 8 13 13 N 1.31515 * 119.99920 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00074 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47268 * 89.99563 * 14 12 10 16 16 H 1.48496 * 109.47397 * 209.99738 * 14 12 10 17 17 H 1.48502 * 109.47255 * 329.99594 * 14 12 10 18 18 C 1.46896 * 111.00316 * 66.04660 * 8 7 6 19 19 C 1.50699 * 109.47227 * 199.57120 * 18 8 7 20 20 C 1.34518 * 125.79416 * 89.99721 * 19 18 8 21 21 C 1.41385 * 106.84055 * 180.02562 * 20 19 18 22 22 C 1.34518 * 106.84155 * 359.97438 * 21 20 19 23 23 O 1.34302 * 125.78406 * 269.69022 * 19 18 8 24 24 H 1.08993 * 109.46934 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47045 * 300.00459 * 1 2 3 26 26 H 1.09001 * 109.47138 * 59.99871 * 1 2 3 27 27 H 1.08998 * 109.47680 * 59.99619 * 3 2 1 28 28 H 1.09007 * 109.47211 * 299.99987 * 3 2 1 29 29 H 1.08993 * 109.47624 * 59.99387 * 4 3 2 30 30 H 1.09009 * 109.47144 * 299.99572 * 4 3 2 31 31 H 1.09001 * 109.47471 * 59.99778 * 5 4 3 32 32 H 1.08997 * 109.46938 * 299.99207 * 5 4 3 33 33 H 1.08996 * 109.47576 * 59.99899 * 6 5 4 34 34 H 1.08999 * 109.47036 * 299.98945 * 6 5 4 35 35 H 1.09001 * 109.47304 * 60.00070 * 7 6 5 36 36 H 1.08997 * 109.47251 * 299.99409 * 7 6 5 37 37 H 1.09003 * 109.47511 * 191.55094 * 9 8 7 38 38 H 1.09006 * 109.46720 * 311.54797 * 9 8 7 39 39 H 0.96994 * 119.99676 * 180.02562 * 13 12 10 40 40 H 1.08997 * 109.47313 * 79.56176 * 18 8 7 41 41 H 1.09003 * 109.47062 * 319.56561 * 18 8 7 42 42 H 1.07992 * 126.57498 * 0.03662 * 20 19 18 43 43 H 1.08001 * 126.57520 * 179.97438 * 21 20 19 44 44 H 1.07997 * 125.78830 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6829 2.4617 0.0000 7 6 6.3052 3.8595 0.0000 8 7 7.7696 3.7435 0.0006 9 6 8.4009 5.0484 0.2389 10 6 8.1917 5.4529 1.6754 11 1 7.7011 4.7776 2.3606 12 6 8.6268 6.6852 2.1149 13 7 8.4447 7.0381 3.3687 14 14 9.4750 7.8535 0.9297 15 1 8.4606 8.7209 0.2785 16 1 10.4433 8.6978 1.6745 17 1 10.1955 7.0708 -0.1065 18 6 8.2510 3.1467 -1.2523 19 6 9.6423 2.6047 -1.0485 20 6 9.9500 1.3591 -0.6444 21 6 11.3607 1.2834 -0.5883 22 6 11.8307 2.4872 -0.9620 23 8 10.7855 3.2816 -1.2452 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8465 0.8899 28 1 1.6886 1.8465 -0.8900 29 1 3.8568 0.6440 -0.8907 30 1 3.8575 0.6438 0.8892 31 1 3.8363 3.1229 0.8904 32 1 3.8358 3.1239 -0.8896 33 1 6.0047 1.9212 -0.8901 34 1 6.0045 1.9206 0.8898 35 1 5.9835 4.4004 0.8900 36 1 5.9836 4.4004 -0.8900 37 1 9.4690 4.9783 0.0329 38 1 7.9525 5.7942 -0.4176 39 1 8.7505 7.9051 3.6778 40 1 8.2678 3.9064 -2.0338 41 1 7.5850 2.3360 -1.5480 42 1 9.2532 0.5686 -0.4083 43 1 11.9482 0.4241 -0.3006 44 1 12.8720 2.7659 -1.0279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = -39.438418 kcal Electronic energy + Delta-G solvation = -21838.321440 eV Core-core repulsion = 18564.369963 eV Total energy + Delta-G solvation = -3273.951477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10425 -38.21095 -37.39195 -34.79195 -32.70505 -32.41369 -30.83670 -29.88609 -27.65145 -26.72382 -25.27768 -23.82720 -21.84319 -21.29580 -20.80029 -20.53239 -19.57860 -17.13551 -16.71130 -16.46270 -16.39480 -15.70414 -15.19316 -15.17808 -14.76933 -14.46388 -14.10797 -13.79095 -13.37006 -12.83781 -12.47203 -12.43040 -12.39466 -12.28846 -12.06788 -12.02080 -11.66949 -11.55714 -11.35129 -10.92165 -10.86067 -10.79009 -10.66094 -10.25839 -9.97092 -9.84382 -9.83575 -9.50158 -9.27757 -8.55415 -8.06281 -7.46793 -6.03649 -4.00328 2.15565 3.02185 3.28754 3.36894 3.41838 3.43850 3.58137 4.44003 4.71578 4.87696 4.95747 5.10086 5.10674 5.15325 5.22320 5.27291 5.30219 5.35531 5.37723 5.41021 5.42504 5.63854 5.68963 5.73392 5.80154 5.94088 6.00557 6.09545 6.16502 6.20687 6.31039 6.35907 6.49843 6.60704 6.68284 6.85294 6.89725 6.97891 6.98838 7.57439 7.63460 7.84272 7.98495 8.65816 9.06076 9.58612 11.09495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004157 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.421923 B = 6733.474755 C = 8624.034443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.115 4.115 7 C 0.063 3.937 8 N -0.522 5.522 9 C 0.161 3.839 10 C -0.505 4.505 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.871 3.129 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.123 3.877 19 C 0.018 3.982 20 C -0.205 4.205 21 C -0.216 4.216 22 C -0.051 4.051 23 O -0.175 6.175 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.021 0.979 37 H 0.031 0.969 38 H -0.014 1.014 39 H 0.263 0.737 40 H 0.041 0.959 41 H 0.098 0.902 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -11.881 -10.389 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.065 4.065 8 N -0.246 5.246 9 C 0.035 3.965 10 C -0.543 4.543 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.190 1.190 18 C -0.005 4.005 19 C -0.033 4.033 20 C -0.225 4.225 21 C -0.235 4.235 22 C -0.119 4.119 23 O -0.070 6.070 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.004 0.996 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -7.063 -11.885 -9.971 17.046 hybrid contribution 0.221 1.331 -0.986 1.671 sum -6.842 -10.554 -10.957 16.681 Atomic orbital electron populations 1.22719 0.81314 1.02551 0.99919 1.87874 1.19505 1.28568 1.95429 1.22636 0.94672 0.84250 1.00151 1.21528 0.92319 0.98262 1.03311 1.21471 0.95906 0.95639 1.02359 1.21640 0.93379 0.97993 1.02319 1.22046 0.87135 0.95705 1.01566 1.61943 1.05537 1.27319 1.29836 1.20257 0.94599 0.83996 0.97659 1.20997 1.38518 1.01451 0.93382 0.90060 1.24876 0.95636 0.97767 0.94970 1.69890 1.47509 1.21561 1.14984 0.86922 0.80109 0.81445 0.81729 1.20344 1.21146 1.19047 1.20590 0.87459 0.99359 0.93059 1.22398 0.86950 0.91064 1.02857 1.21418 0.95438 0.97847 1.07814 1.21736 0.95024 0.98833 1.07900 1.23884 0.91943 0.90346 1.05714 1.84051 1.14349 1.40941 1.67691 0.89807 0.94109 0.94220 0.93201 0.93460 0.91356 0.90997 0.91404 0.92136 0.92581 0.90891 0.88902 0.96032 0.95056 0.99631 0.92714 0.94068 0.88444 0.83887 0.84006 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.55 10.70 -35.23 -0.38 -4.92 16 3 C 0.06 0.62 5.94 37.16 0.22 0.84 16 4 C -0.12 -1.28 5.58 -26.73 -0.15 -1.43 16 5 C -0.12 -1.36 5.21 -26.73 -0.14 -1.50 16 6 C -0.12 -1.61 5.19 -26.73 -0.14 -1.75 16 7 C 0.06 1.12 4.81 -3.82 -0.02 1.10 16 8 N -0.52 -10.74 4.37 -237.51 -1.04 -11.78 16 9 C 0.16 3.96 3.62 -4.98 -0.02 3.94 16 10 C -0.51 -14.45 8.94 -34.44 -0.31 -14.76 16 11 H 0.08 2.53 7.92 -52.49 -0.42 2.11 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 14 Si 0.87 21.88 27.39 -169.99 -4.66 17.22 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.56 6.66 56.52 0.38 -6.18 16 18 C 0.12 2.13 5.38 -4.98 -0.03 2.11 16 19 C 0.02 0.33 6.23 -35.62 -0.22 0.11 16 20 C -0.21 -3.37 10.81 -39.70 -0.43 -3.80 16 21 C -0.22 -3.24 10.91 -39.70 -0.43 -3.67 16 22 C -0.05 -0.78 12.09 29.42 0.36 -0.43 16 23 O -0.17 -3.30 9.99 5.69 0.06 -3.25 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.71 6.25 -51.93 -0.32 0.39 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.89 7.15 -51.93 -0.37 1.52 16 36 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.03 0.82 6.14 -51.93 -0.32 0.50 16 38 H -0.01 -0.34 7.27 -51.93 -0.38 -0.72 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.04 0.70 8.00 -51.93 -0.42 0.29 16 41 H 0.10 1.39 5.88 -51.93 -0.31 1.08 16 42 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.20 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -32.73 359.11 -7.73 -40.46 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.61 Total: -0.23 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.29 Total: -15.95 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.27 Total: -38.75 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.32 Total: -8.17 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.66 Total: 17.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.73 -7.73 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.017 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds