Wall clock time and date at job start Tue Mar 31 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99809 * 2 1 4 4 C 1.52995 * 109.47243 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47237 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46874 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46727 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46875 * 179.97438 * 7 6 5 9 9 C 1.46899 * 111.00107 * 190.00314 * 8 7 6 10 10 C 1.50702 * 109.47363 * 71.54253 * 9 8 7 11 11 H 1.07998 * 120.00098 * 3.98911 * 10 9 8 12 12 C 1.37879 * 119.99918 * 183.98338 * 10 9 8 13 13 N 1.31515 * 119.99920 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00074 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47268 * 89.99563 * 14 12 10 16 16 H 1.48496 * 109.47397 * 209.99738 * 14 12 10 17 17 H 1.48502 * 109.47255 * 329.99594 * 14 12 10 18 18 C 1.46896 * 111.00316 * 66.04660 * 8 7 6 19 19 C 1.50699 * 109.47227 * 199.57120 * 18 8 7 20 20 C 1.34518 * 125.79416 * 89.99721 * 19 18 8 21 21 C 1.41385 * 106.84055 * 180.02562 * 20 19 18 22 22 C 1.34518 * 106.84155 * 359.97438 * 21 20 19 23 23 O 1.34302 * 125.78406 * 269.69022 * 19 18 8 24 24 H 1.08993 * 109.46934 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47045 * 300.00459 * 1 2 3 26 26 H 1.09001 * 109.47138 * 59.99871 * 1 2 3 27 27 H 1.08998 * 109.47680 * 59.99619 * 3 2 1 28 28 H 1.09007 * 109.47211 * 299.99987 * 3 2 1 29 29 H 1.08993 * 109.47624 * 59.99387 * 4 3 2 30 30 H 1.09009 * 109.47144 * 299.99572 * 4 3 2 31 31 H 1.09001 * 109.47471 * 59.99778 * 5 4 3 32 32 H 1.08997 * 109.46938 * 299.99207 * 5 4 3 33 33 H 1.08996 * 109.47576 * 59.99899 * 6 5 4 34 34 H 1.08999 * 109.47036 * 299.98945 * 6 5 4 35 35 H 1.09001 * 109.47304 * 60.00070 * 7 6 5 36 36 H 1.08997 * 109.47251 * 299.99409 * 7 6 5 37 37 H 1.09003 * 109.47511 * 191.55094 * 9 8 7 38 38 H 1.09006 * 109.46720 * 311.54797 * 9 8 7 39 39 H 0.96994 * 119.99676 * 180.02562 * 13 12 10 40 40 H 1.08997 * 109.47313 * 79.56176 * 18 8 7 41 41 H 1.09003 * 109.47062 * 319.56561 * 18 8 7 42 42 H 1.07992 * 126.57498 * 0.03662 * 20 19 18 43 43 H 1.08001 * 126.57520 * 179.97438 * 21 20 19 44 44 H 1.07997 * 125.78830 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6829 2.4617 0.0000 7 6 6.3052 3.8595 0.0000 8 7 7.7696 3.7435 0.0006 9 6 8.4009 5.0484 0.2389 10 6 8.1917 5.4529 1.6754 11 1 7.7011 4.7776 2.3606 12 6 8.6268 6.6852 2.1149 13 7 8.4447 7.0381 3.3687 14 14 9.4750 7.8535 0.9297 15 1 8.4606 8.7209 0.2785 16 1 10.4433 8.6978 1.6745 17 1 10.1955 7.0708 -0.1065 18 6 8.2510 3.1467 -1.2523 19 6 9.6423 2.6047 -1.0485 20 6 9.9500 1.3591 -0.6444 21 6 11.3607 1.2834 -0.5883 22 6 11.8307 2.4872 -0.9620 23 8 10.7855 3.2816 -1.2452 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8465 0.8899 28 1 1.6886 1.8465 -0.8900 29 1 3.8568 0.6440 -0.8907 30 1 3.8575 0.6438 0.8892 31 1 3.8363 3.1229 0.8904 32 1 3.8358 3.1239 -0.8896 33 1 6.0047 1.9212 -0.8901 34 1 6.0045 1.9206 0.8898 35 1 5.9835 4.4004 0.8900 36 1 5.9836 4.4004 -0.8900 37 1 9.4690 4.9783 0.0329 38 1 7.9525 5.7942 -0.4176 39 1 8.7505 7.9051 3.6778 40 1 8.2678 3.9064 -2.0338 41 1 7.5850 2.3360 -1.5480 42 1 9.2532 0.5686 -0.4083 43 1 11.9482 0.4241 -0.3006 44 1 12.8720 2.7659 -1.0279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081517702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:45 Heat of formation + Delta-G solvation = -60.889014 kcal Electronic energy + Delta-G solvation = -21839.251608 eV Core-core repulsion = 18564.369963 eV Total energy + Delta-G solvation = -3274.881644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.36141 -39.16656 -38.72772 -35.92197 -34.70054 -33.81491 -31.98767 -31.41285 -29.21153 -27.65482 -26.41009 -25.29141 -23.23885 -22.53137 -21.95036 -21.86523 -20.98682 -19.05700 -18.19582 -17.28254 -17.22663 -17.06846 -16.65575 -16.31494 -16.00227 -15.71540 -15.51002 -15.43540 -14.54182 -14.52925 -14.12073 -13.62752 -13.56145 -13.43717 -13.35799 -13.14989 -13.05535 -12.78076 -12.61502 -12.48605 -12.25327 -11.91062 -11.87711 -11.79402 -11.56669 -11.46434 -11.25240 -10.80480 -10.71411 -10.59310 -9.33541 -9.06088 -8.29896 -6.31983 0.89259 1.29621 1.32684 1.44071 1.81276 2.25057 2.31901 2.81742 3.03552 3.30061 3.86455 3.98452 4.09198 4.12052 4.19166 4.24626 4.28367 4.40561 4.45142 4.48482 4.53278 4.54701 4.63818 4.69584 4.72740 4.84665 4.89311 4.94641 4.95803 4.99789 5.04411 5.12060 5.19253 5.25913 5.30113 5.47160 5.51160 5.55451 5.73947 5.95120 6.25969 6.32273 6.38621 6.58592 6.73895 7.31239 8.86799 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004157 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.421923 B = 6733.474755 C = 8624.034443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.059 3.941 4 C -0.111 4.111 5 C -0.108 4.108 6 C -0.103 4.103 7 C 0.065 3.935 8 N -0.539 5.539 9 C 0.175 3.825 10 C -0.509 4.509 11 H 0.039 0.961 12 C 0.011 3.989 13 N -0.946 5.946 14 Si 0.940 3.060 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.258 1.258 18 C 0.127 3.873 19 C -0.019 4.019 20 C -0.205 4.205 21 C -0.223 4.223 22 C -0.057 4.057 23 O -0.204 6.204 24 H 0.096 0.904 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.019 0.981 38 H -0.012 1.012 39 H 0.267 0.733 40 H 0.043 0.957 41 H 0.129 0.871 42 H 0.159 0.841 43 H 0.172 0.828 44 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.203 -12.659 -12.529 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.018 4.018 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.141 4.141 7 C -0.063 4.063 8 N -0.263 5.263 9 C 0.048 3.952 10 C -0.548 4.548 11 H 0.057 0.943 12 C -0.186 4.186 13 N -0.586 5.586 14 Si 0.764 3.236 15 H -0.188 1.188 16 H -0.205 1.205 17 H -0.182 1.182 18 C 0.000 4.000 19 C -0.069 4.069 20 C -0.225 4.225 21 C -0.241 4.241 22 C -0.124 4.124 23 O -0.100 6.100 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.006 0.994 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.147 0.853 42 H 0.177 0.823 43 H 0.189 0.811 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.935 -12.687 -12.122 18.868 hybrid contribution 0.160 1.461 -0.257 1.492 sum -6.775 -11.226 -12.379 18.032 Atomic orbital electron populations 1.22915 0.79689 1.03747 1.00767 1.87829 1.21388 1.29077 1.95608 1.22634 0.94110 0.84196 1.00833 1.21431 0.92954 0.97337 1.03107 1.21384 0.94193 0.96426 1.02639 1.21527 0.94673 0.95362 1.02546 1.22038 0.85888 0.97958 1.00368 1.61817 1.06858 1.25060 1.32598 1.19912 0.94216 0.86233 0.94827 1.21198 1.37685 1.00917 0.94991 0.94301 1.25767 0.96432 0.99714 0.96734 1.70038 1.49049 1.22416 1.17142 0.85813 0.79252 0.79087 0.79440 1.18825 1.20500 1.18204 1.20691 0.88018 1.00114 0.91226 1.22639 0.87178 0.91939 1.05108 1.21790 0.96685 0.97643 1.06417 1.22151 0.94685 0.99803 1.07509 1.24729 0.92808 0.90276 1.04545 1.84021 1.15278 1.42268 1.68480 0.88550 0.93522 0.93091 0.93112 0.92197 0.90741 0.92010 0.92377 0.90656 0.90440 0.92453 0.92587 0.94621 0.96272 0.99441 0.92436 0.93834 0.85299 0.82300 0.81094 0.75310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.09 10.70 -148.98 -1.59 -10.68 16 3 C 0.06 1.13 5.94 71.98 0.43 1.56 16 4 C -0.11 -2.27 5.58 30.59 0.17 -2.10 16 5 C -0.11 -2.42 5.21 30.60 0.16 -2.26 16 6 C -0.10 -2.80 5.19 30.60 0.16 -2.64 16 7 C 0.06 2.31 4.81 86.30 0.41 2.72 16 8 N -0.54 -22.22 4.37 -905.35 -3.96 -26.18 16 9 C 0.18 8.71 3.62 85.56 0.31 9.02 16 10 C -0.51 -30.17 8.94 25.60 0.23 -29.94 16 11 H 0.04 2.56 7.92 -2.91 -0.02 2.54 16 12 C 0.01 0.65 5.47 84.65 0.46 1.11 16 13 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 14 Si 0.94 45.43 27.39 68.60 1.88 47.31 16 15 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 17 H -0.26 -12.05 6.66 99.48 0.66 -11.39 16 18 C 0.13 4.22 5.38 85.56 0.46 4.68 16 19 C -0.02 -0.65 6.23 24.83 0.15 -0.50 16 20 C -0.21 -6.39 10.81 22.19 0.24 -6.15 16 21 C -0.22 -6.17 10.91 22.19 0.24 -5.93 16 22 C -0.06 -1.64 12.09 66.97 0.81 -0.83 16 23 O -0.20 -7.50 9.99 -2.56 -0.03 -7.53 16 24 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.77 6.25 -2.39 -0.01 1.75 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 2.39 7.15 -2.39 -0.02 2.37 16 36 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 37 H 0.02 1.00 6.14 -2.39 -0.01 0.99 16 38 H -0.01 -0.59 7.27 -2.38 -0.02 -0.60 16 39 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.04 1.42 8.00 -2.39 -0.02 1.40 16 41 H 0.13 3.36 5.88 -2.39 -0.01 3.34 16 42 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 44 H 0.23 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -72.77 359.11 2.99 -69.78 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.90 Total: 16.59 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 5.49 Total: -29.65 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.66 Total: -85.82 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.62 Total: -18.21 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -72.77 2.99 -69.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.889 kcal (2) G-P(sol) polarization free energy of solvation -72.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds