Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47203 * 2 1 4 4 C 1.34226 * 116.99688 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00383 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99666 * 179.97438 * 4 3 2 7 7 C 1.53115 * 109.52303 * 60.31695 * 6 4 3 8 8 C 1.53035 * 109.27808 * 177.55670 * 7 6 4 9 9 N 1.46848 * 109.52615 * 300.81977 * 8 7 6 10 10 C 1.46898 * 111.00367 * 185.83990 * 9 8 7 11 11 C 1.52997 * 109.47120 * 71.90189 * 10 9 8 12 12 C 1.50704 * 115.55023 * 293.45983 * 11 10 9 13 13 H 1.07997 * 119.99995 * 143.90955 * 12 11 10 14 14 C 1.37881 * 119.99835 * 323.90820 * 12 11 10 15 15 N 1.31514 * 119.99791 * 158.18223 * 14 12 11 16 16 Si 1.86797 * 120.00030 * 338.18073 * 14 12 11 17 17 H 1.48500 * 109.46992 * 95.39350 * 16 14 12 18 18 H 1.48504 * 109.46932 * 215.39251 * 16 14 12 19 19 H 1.48503 * 109.47438 * 335.39330 * 16 14 12 20 20 C 1.52996 * 117.49773 * 147.78878 * 11 10 9 21 21 C 1.52996 * 117.49980 * 79.12853 * 11 10 9 22 22 C 1.46850 * 111.19789 * 61.73917 * 9 8 7 23 23 C 1.53032 * 109.52563 * 298.26347 * 22 9 8 24 24 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46862 * 300.00291 * 1 2 3 26 26 H 1.09001 * 109.46964 * 60.00301 * 1 2 3 27 27 H 1.09003 * 109.46686 * 239.99944 * 2 1 3 28 28 H 1.08998 * 109.46977 * 120.00475 * 2 1 3 29 29 H 1.08994 * 109.57517 * 300.15554 * 6 4 3 30 30 H 1.08994 * 109.50515 * 297.50095 * 7 6 4 31 31 H 1.09009 * 109.50044 * 57.61976 * 7 6 4 32 32 H 1.09003 * 109.45955 * 180.80830 * 8 7 6 33 33 H 1.08991 * 109.46099 * 60.83916 * 8 7 6 34 34 H 1.08994 * 109.47073 * 191.90554 * 10 9 8 35 35 H 1.09005 * 109.46870 * 311.89951 * 10 9 8 36 36 H 0.97001 * 119.99459 * 180.02562 * 15 14 12 37 37 H 1.09003 * 117.50125 * 0.02562 * 20 11 10 38 38 H 1.09007 * 117.50078 * 145.02034 * 20 11 10 39 39 H 1.08996 * 117.50165 * 214.97754 * 21 11 10 40 40 H 1.09002 * 117.49585 * 359.97394 * 21 11 10 41 41 H 1.08990 * 109.46750 * 178.23808 * 22 9 8 42 42 H 1.09005 * 109.45692 * 58.27445 * 22 9 8 43 43 H 1.09004 * 109.50464 * 299.23689 * 23 22 9 44 44 H 1.08998 * 109.50776 * 179.11456 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 3.4564 3.6837 1.2525 8 6 4.0931 5.0751 1.2771 9 7 5.5559 4.9456 1.2764 10 6 6.2005 6.2555 1.4391 11 6 6.0080 6.7436 2.8763 12 6 4.5888 7.0639 3.2693 13 1 4.2440 6.8490 4.2700 14 6 3.7306 7.6313 2.3514 15 7 2.4299 7.5244 2.5137 16 14 4.4153 8.5519 0.8773 17 1 4.4798 7.6375 -0.2911 18 1 3.5317 9.7019 0.5577 19 1 5.7788 9.0481 1.1932 20 6 7.1202 7.5985 3.4870 21 6 6.9226 6.1534 3.9514 22 6 6.0289 4.2738 0.0593 23 6 5.4500 2.8585 -0.0017 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.5833 3.4717 -0.8892 30 1 2.3709 3.7804 1.2374 31 1 3.7606 3.1286 2.1401 32 1 3.7758 5.6038 2.1759 33 1 3.7776 5.6344 0.3964 34 1 7.2655 6.1653 1.2256 35 1 5.7509 6.9698 0.7494 36 1 1.8261 7.9232 1.8676 37 1 7.9889 7.8136 2.8647 38 1 6.8255 8.3924 4.1733 39 1 6.4981 5.9972 4.9430 40 1 7.6613 5.4170 3.6348 41 1 7.1174 4.2207 0.0734 42 1 5.7043 4.8369 -0.8158 43 1 5.7853 2.2904 0.8661 44 1 5.7886 2.3657 -0.9130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -49.337804 kcal Electronic energy + Delta-G solvation = -23465.199240 eV Core-core repulsion = 20190.818494 eV Total energy + Delta-G solvation = -3274.380746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54267 -38.63040 -36.80430 -36.09740 -32.90799 -32.56616 -31.63016 -30.16650 -27.12088 -25.81993 -23.91531 -22.74882 -22.39643 -21.29483 -20.73751 -19.34106 -18.98886 -17.51681 -16.53573 -16.46295 -16.15216 -15.47230 -14.91067 -14.40788 -14.17237 -13.86984 -13.49118 -13.21388 -13.15785 -12.99027 -12.72905 -12.70755 -12.21642 -12.02365 -11.90074 -11.66511 -11.53218 -11.02953 -10.91629 -10.76046 -10.54435 -10.51108 -10.46361 -10.27188 -10.08305 -9.95468 -9.86286 -9.35018 -9.07927 -8.74463 -8.09434 -7.37421 -6.30352 -4.09646 2.35088 2.76244 3.13414 3.31234 3.37365 4.27820 4.48175 4.73473 4.82197 4.88640 4.89954 4.99469 5.15265 5.16546 5.40903 5.44768 5.57410 5.63455 5.66121 5.75259 5.83550 5.86949 5.97341 6.04401 6.07111 6.14522 6.21680 6.28251 6.40165 6.45743 6.51132 6.54470 6.59745 6.65786 6.82565 6.88672 7.04164 7.24971 7.48746 7.69965 7.88299 7.92419 8.06592 8.48388 8.82772 9.36518 10.78732 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.005234 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.672015 B = 5348.067492 C = 5904.140507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.471 3.529 5 O -0.515 6.515 6 C -0.084 4.084 7 C -0.099 4.099 8 C 0.021 3.979 9 N -0.519 5.519 10 C 0.088 3.912 11 C 0.017 3.983 12 C -0.484 4.484 13 H 0.080 0.920 14 C 0.085 3.915 15 N -0.875 5.875 16 Si 0.871 3.129 17 H -0.282 1.282 18 H -0.296 1.296 19 H -0.261 1.261 20 C -0.213 4.213 21 C -0.174 4.174 22 C 0.050 3.950 23 C -0.093 4.093 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.170 0.830 33 H 0.017 0.983 34 H 0.054 0.946 35 H 0.025 0.975 36 H 0.267 0.733 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.023 0.977 43 H 0.080 0.920 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 -9.971 -6.516 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.272 6.272 4 C 0.315 3.685 5 O -0.403 6.403 6 C -0.103 4.103 7 C -0.137 4.137 8 C -0.105 4.105 9 N -0.243 5.243 10 C -0.039 4.039 11 C 0.015 3.985 12 C -0.521 4.521 13 H 0.097 0.903 14 C -0.119 4.119 15 N -0.510 5.510 16 Si 0.701 3.299 17 H -0.210 1.210 18 H -0.224 1.224 19 H -0.186 1.186 20 C -0.252 4.252 21 C -0.211 4.211 22 C -0.078 4.078 23 C -0.131 4.131 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.187 0.813 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.099 0.901 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.070 -10.539 -6.186 12.220 hybrid contribution 0.134 0.827 -1.744 1.935 sum 0.204 -9.712 -7.930 12.540 Atomic orbital electron populations 1.21800 0.92724 1.02704 1.03734 1.22982 0.95372 0.80728 1.02299 1.86559 1.24900 1.31832 1.83914 1.24020 0.80234 0.92908 0.71366 1.90617 1.60468 1.43349 1.45879 1.21332 0.96949 0.89103 1.02938 1.21610 1.00577 0.96934 0.94575 1.23262 0.85766 0.94921 1.06546 1.61827 1.07309 1.20779 1.34392 1.21815 0.96476 0.88725 0.96924 1.19209 0.91999 0.97781 0.89464 1.20265 0.91411 1.40660 0.99749 0.90251 1.24899 0.94485 0.95005 0.97463 1.70032 1.01979 1.42055 1.36971 0.87202 0.79973 0.79649 0.83058 1.21017 1.22409 1.18594 1.23153 1.02174 0.94063 1.05770 1.22627 1.03835 0.94747 0.99906 1.22123 0.99563 0.94019 0.92142 1.21439 0.91493 0.97198 1.02957 0.90475 0.91220 0.91541 0.91594 0.91330 0.88228 0.90685 0.90965 0.81348 0.96473 0.92755 0.95750 0.92266 0.91765 0.89891 0.90312 0.90940 0.90967 0.95845 0.90141 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -5.22 10.15 -39.25 -0.40 -5.62 16 4 C 0.47 7.52 7.26 36.01 0.26 7.78 16 5 O -0.52 -9.06 15.73 -18.75 -0.29 -9.35 16 6 C -0.08 -1.34 2.70 -91.64 -0.25 -1.59 16 7 C -0.10 -1.80 5.31 -26.65 -0.14 -1.94 16 8 C 0.02 0.45 3.93 -3.83 -0.02 0.43 16 9 N -0.52 -10.45 4.61 -234.68 -1.08 -11.53 16 10 C 0.09 1.87 4.52 -3.83 -0.02 1.85 16 11 C 0.02 0.38 1.37 -155.66 -0.21 0.17 16 12 C -0.48 -12.59 7.48 -34.44 -0.26 -12.84 16 13 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 14 C 0.09 2.23 3.16 -17.82 -0.06 2.18 16 15 N -0.88 -23.86 13.62 55.43 0.76 -23.11 16 16 Si 0.87 20.81 23.38 -169.99 -3.97 16.84 16 17 H -0.28 -6.62 6.32 56.52 0.36 -6.26 16 18 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.21 -4.44 9.92 -26.70 -0.26 -4.70 16 21 C -0.17 -3.57 9.96 -26.70 -0.27 -3.84 16 22 C 0.05 0.84 5.44 -3.83 -0.02 0.82 16 23 C -0.09 -1.45 4.68 -26.65 -0.12 -1.58 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 28 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.17 4.17 3.32 -51.93 -0.17 3.99 16 33 H 0.02 0.38 6.87 -51.93 -0.36 0.03 16 34 H 0.05 1.05 7.81 -51.93 -0.41 0.64 16 35 H 0.02 0.56 2.64 -51.93 -0.14 0.43 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -27.78 337.20 -8.09 -35.87 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.42 Total: 5.10 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.75 Total: -13.28 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.33 Total: -34.64 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.69 Total: -14.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -3.97 Total: 16.84 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.78 -8.09 -35.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.468 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds