Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47203 * 2 1 4 4 C 1.34226 * 116.99688 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00383 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99666 * 179.97438 * 4 3 2 7 7 C 1.53115 * 109.52303 * 60.31695 * 6 4 3 8 8 C 1.53035 * 109.27808 * 177.55670 * 7 6 4 9 9 N 1.46848 * 109.52615 * 300.81977 * 8 7 6 10 10 C 1.46898 * 111.00367 * 185.83990 * 9 8 7 11 11 C 1.52997 * 109.47120 * 71.90189 * 10 9 8 12 12 C 1.50704 * 115.55023 * 293.45983 * 11 10 9 13 13 H 1.07997 * 119.99995 * 143.90955 * 12 11 10 14 14 C 1.37881 * 119.99835 * 323.90820 * 12 11 10 15 15 N 1.31514 * 119.99791 * 158.18223 * 14 12 11 16 16 Si 1.86797 * 120.00030 * 338.18073 * 14 12 11 17 17 H 1.48500 * 109.46992 * 95.39350 * 16 14 12 18 18 H 1.48504 * 109.46932 * 215.39251 * 16 14 12 19 19 H 1.48503 * 109.47438 * 335.39330 * 16 14 12 20 20 C 1.52996 * 117.49773 * 147.78878 * 11 10 9 21 21 C 1.52996 * 117.49980 * 79.12853 * 11 10 9 22 22 C 1.46850 * 111.19789 * 61.73917 * 9 8 7 23 23 C 1.53032 * 109.52563 * 298.26347 * 22 9 8 24 24 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46862 * 300.00291 * 1 2 3 26 26 H 1.09001 * 109.46964 * 60.00301 * 1 2 3 27 27 H 1.09003 * 109.46686 * 239.99944 * 2 1 3 28 28 H 1.08998 * 109.46977 * 120.00475 * 2 1 3 29 29 H 1.08994 * 109.57517 * 300.15554 * 6 4 3 30 30 H 1.08994 * 109.50515 * 297.50095 * 7 6 4 31 31 H 1.09009 * 109.50044 * 57.61976 * 7 6 4 32 32 H 1.09003 * 109.45955 * 180.80830 * 8 7 6 33 33 H 1.08991 * 109.46099 * 60.83916 * 8 7 6 34 34 H 1.08994 * 109.47073 * 191.90554 * 10 9 8 35 35 H 1.09005 * 109.46870 * 311.89951 * 10 9 8 36 36 H 0.97001 * 119.99459 * 180.02562 * 15 14 12 37 37 H 1.09003 * 117.50125 * 0.02562 * 20 11 10 38 38 H 1.09007 * 117.50078 * 145.02034 * 20 11 10 39 39 H 1.08996 * 117.50165 * 214.97754 * 21 11 10 40 40 H 1.09002 * 117.49585 * 359.97394 * 21 11 10 41 41 H 1.08990 * 109.46750 * 178.23808 * 22 9 8 42 42 H 1.09005 * 109.45692 * 58.27445 * 22 9 8 43 43 H 1.09004 * 109.50464 * 299.23689 * 23 22 9 44 44 H 1.08998 * 109.50776 * 179.11456 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 3.4564 3.6837 1.2525 8 6 4.0931 5.0751 1.2771 9 7 5.5559 4.9456 1.2764 10 6 6.2005 6.2555 1.4391 11 6 6.0080 6.7436 2.8763 12 6 4.5888 7.0639 3.2693 13 1 4.2440 6.8490 4.2700 14 6 3.7306 7.6313 2.3514 15 7 2.4299 7.5244 2.5137 16 14 4.4153 8.5519 0.8773 17 1 4.4798 7.6375 -0.2911 18 1 3.5317 9.7019 0.5577 19 1 5.7788 9.0481 1.1932 20 6 7.1202 7.5985 3.4870 21 6 6.9226 6.1534 3.9514 22 6 6.0289 4.2738 0.0593 23 6 5.4500 2.8585 -0.0017 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.5833 3.4717 -0.8892 30 1 2.3709 3.7804 1.2374 31 1 3.7606 3.1286 2.1401 32 1 3.7758 5.6038 2.1759 33 1 3.7776 5.6344 0.3964 34 1 7.2655 6.1653 1.2256 35 1 5.7509 6.9698 0.7494 36 1 1.8261 7.9232 1.8676 37 1 7.9889 7.8136 2.8647 38 1 6.8255 8.3924 4.1733 39 1 6.4981 5.9972 4.9430 40 1 7.6613 5.4170 3.6348 41 1 7.1174 4.2207 0.0734 42 1 5.7043 4.8369 -0.8158 43 1 5.7853 2.2904 0.8661 44 1 5.7886 2.3657 -0.9130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = -65.600648 kcal Electronic energy + Delta-G solvation = -23465.904450 eV Core-core repulsion = 20190.818494 eV Total energy + Delta-G solvation = -3275.085956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78895 -40.14601 -38.20188 -37.50200 -34.58250 -34.27752 -32.53886 -31.62073 -28.70666 -27.62861 -25.22891 -24.04202 -23.63463 -22.93766 -22.05775 -20.93943 -20.60868 -18.74260 -18.24340 -17.65773 -17.56547 -17.16636 -16.38833 -15.93259 -15.55356 -15.30107 -14.82680 -14.82259 -14.63066 -14.46157 -14.15880 -13.86153 -13.65704 -13.59149 -13.00113 -12.91600 -12.79435 -12.56050 -12.38060 -12.30768 -12.12021 -12.07412 -11.85179 -11.70485 -11.62406 -11.52805 -11.30926 -11.10304 -10.81765 -10.46319 -10.01014 -8.97500 -8.32617 -6.12870 1.09214 1.23233 1.37322 1.46682 1.65824 2.31252 2.82303 3.10523 3.53321 3.67205 3.77503 3.81450 3.99405 4.06379 4.07861 4.18124 4.31009 4.32744 4.33363 4.45639 4.55130 4.60469 4.64601 4.74118 4.76503 4.82441 4.89418 4.90658 4.91877 5.02811 5.04048 5.12927 5.17626 5.18523 5.32628 5.36105 5.44131 5.61368 5.72035 5.82527 6.29903 6.43053 6.52386 6.67583 6.78168 7.34091 8.80216 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.005234 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.672015 B = 5348.067492 C = 5904.140507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.364 6.364 4 C 0.476 3.524 5 O -0.532 6.532 6 C -0.080 4.080 7 C -0.090 4.090 8 C 0.028 3.972 9 N -0.526 5.526 10 C 0.089 3.911 11 C -0.011 4.011 12 C -0.485 4.485 13 H 0.036 0.964 14 C 0.055 3.945 15 N -0.912 5.912 16 Si 0.918 3.082 17 H -0.275 1.275 18 H -0.303 1.303 19 H -0.251 1.251 20 C -0.202 4.202 21 C -0.161 4.161 22 C 0.049 3.951 23 C -0.086 4.086 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.002 0.998 34 H 0.082 0.918 35 H 0.011 0.989 36 H 0.267 0.733 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -10.954 -8.209 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.321 3.679 5 O -0.422 6.422 6 C -0.099 4.099 7 C -0.128 4.128 8 C -0.099 4.099 9 N -0.250 5.250 10 C -0.038 4.038 11 C -0.012 4.012 12 C -0.523 4.523 13 H 0.054 0.946 14 C -0.146 4.146 15 N -0.550 5.550 16 Si 0.747 3.253 17 H -0.202 1.202 18 H -0.232 1.232 19 H -0.175 1.175 20 C -0.240 4.240 21 C -0.199 4.199 22 C -0.079 4.079 23 C -0.123 4.123 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.020 0.980 34 H 0.100 0.900 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.667 -11.528 -7.874 14.060 hybrid contribution -0.415 1.064 -1.119 1.598 sum 1.252 -10.465 -8.993 13.855 Atomic orbital electron populations 1.21832 0.90581 1.04432 1.03561 1.23322 0.97083 0.79173 1.02651 1.86553 1.24113 1.33928 1.83441 1.23876 0.80615 0.92503 0.70934 1.90607 1.60941 1.43784 1.46833 1.21263 0.97540 0.89147 1.01969 1.21428 1.00164 0.95620 0.95636 1.22944 0.87052 0.95934 1.03996 1.61812 1.06300 1.20386 1.36534 1.21793 0.97987 0.88837 0.95218 1.19226 0.90584 1.00063 0.91306 1.20283 0.93627 1.40446 0.97897 0.94568 1.25318 0.94364 0.95397 0.99471 1.70122 1.03136 1.43456 1.38249 0.86444 0.79587 0.78376 0.80932 1.20190 1.23188 1.17501 1.23163 1.01770 0.93844 1.05210 1.22634 1.03150 0.95373 0.98713 1.22246 1.00939 0.94044 0.90640 1.21390 0.90846 0.96513 1.03580 0.87779 0.91798 0.91277 0.90792 0.91459 0.86998 0.91050 0.91897 0.84879 0.97978 0.89975 0.97141 0.92340 0.89070 0.90734 0.91340 0.88673 0.88669 0.95525 0.91124 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.29 71.98 0.74 -1.57 16 2 C 0.05 1.10 6.19 71.98 0.45 1.54 16 3 O -0.36 -10.30 10.15 -51.38 -0.52 -10.83 16 4 C 0.48 14.59 7.26 71.24 0.52 15.10 16 5 O -0.53 -17.89 15.73 21.97 0.35 -17.54 16 6 C -0.08 -2.44 2.70 -11.46 -0.03 -2.47 16 7 C -0.09 -3.29 5.31 30.64 0.16 -3.13 16 8 C 0.03 1.18 3.93 86.32 0.34 1.52 16 9 N -0.53 -20.35 4.61 -896.40 -4.13 -24.48 16 10 C 0.09 3.58 4.52 86.30 0.39 3.97 16 11 C -0.01 -0.47 1.37 -52.93 -0.07 -0.54 16 12 C -0.49 -25.91 7.48 25.60 0.19 -25.71 16 13 H 0.04 2.18 8.06 -2.91 -0.02 2.16 16 14 C 0.06 2.96 3.16 84.66 0.27 3.22 16 15 N -0.91 -51.62 13.62 21.45 0.29 -51.33 16 16 Si 0.92 42.80 23.38 68.60 1.60 44.40 16 17 H -0.27 -12.37 6.32 99.48 0.63 -11.74 16 18 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 19 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16 20 C -0.20 -7.94 9.92 30.62 0.30 -7.63 16 21 C -0.16 -6.36 9.96 30.62 0.30 -6.05 16 22 C 0.05 1.51 5.44 86.32 0.47 1.98 16 23 C -0.09 -2.46 4.68 30.65 0.14 -2.31 16 24 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.13 6.78 3.32 -2.39 -0.01 6.77 16 33 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 34 H 0.08 2.83 7.81 -2.39 -0.02 2.81 16 35 H 0.01 0.47 2.64 -2.38 -0.01 0.47 16 36 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 41 H 0.10 2.51 7.96 -2.39 -0.02 2.49 16 42 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 2.19 8.04 -2.38 -0.02 2.17 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -60.55 337.20 2.65 -57.90 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.89 Total: 23.96 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 4.17 Total: -22.08 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -3.84 Total: -75.81 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.18 Total: -28.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.60 Total: 44.40 kcal Total: -60.55 2.65 -57.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.698 kcal (2) G-P(sol) polarization free energy of solvation -60.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds