Wall clock time and date at job start Tue Mar 31 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45198 * 109.47087 * 2 1 4 4 C 1.34230 * 117.00434 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99733 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00307 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.50690 * 60.07221 * 6 4 3 8 8 C 1.53125 * 109.50281 * 299.99589 * 6 4 3 9 9 C 1.53109 * 109.16178 * 182.36676 * 8 6 4 10 10 C 1.53038 * 109.28055 * 57.65342 * 9 8 6 11 11 N 1.46843 * 109.52607 * 300.82122 * 10 9 8 12 12 C 1.46890 * 111.00353 * 185.83791 * 11 10 9 13 13 C 1.53002 * 109.47097 * 72.30301 * 12 11 10 14 14 C 1.50703 * 115.54898 * 268.45012 * 13 12 11 15 15 H 1.08002 * 119.99331 * 140.17967 * 14 13 12 16 16 C 1.37873 * 120.00197 * 320.18193 * 14 13 12 17 17 N 1.31520 * 120.00257 * 348.31113 * 16 14 13 18 18 Si 1.86799 * 119.99943 * 168.30779 * 16 14 13 19 19 H 1.48504 * 109.47143 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46985 * 120.00122 * 18 16 14 21 21 H 1.48497 * 109.47375 * 239.99900 * 18 16 14 22 22 C 1.52999 * 117.49986 * 54.12429 * 13 12 11 23 23 C 1.53010 * 60.03096 * 107.47748 * 22 13 12 24 24 C 1.46847 * 111.19813 * 61.73751 * 11 10 9 25 25 H 1.08997 * 109.47272 * 60.00536 * 1 2 3 26 26 H 1.09002 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47683 * 299.99875 * 1 2 3 28 28 H 1.08998 * 109.47683 * 240.00125 * 2 1 3 29 29 H 1.08997 * 109.47272 * 119.99464 * 2 1 3 30 30 H 1.08994 * 109.52169 * 62.45711 * 8 6 4 31 31 H 1.09001 * 109.52150 * 302.27266 * 8 6 4 32 32 H 1.09001 * 109.50459 * 297.71492 * 9 8 6 33 33 H 1.09009 * 109.53564 * 177.61359 * 9 8 6 34 34 H 1.09001 * 109.46700 * 180.80012 * 10 9 8 35 35 H 1.09004 * 109.45950 * 60.84014 * 10 9 8 36 36 H 1.09002 * 109.47339 * 312.30322 * 12 11 10 37 37 H 1.08997 * 109.47429 * 192.30195 * 12 11 10 38 38 H 0.96990 * 119.99991 * 185.00093 * 17 16 14 39 39 H 1.09001 * 117.49853 * 214.97926 * 22 13 12 40 40 H 1.08999 * 117.49850 * 359.97438 * 22 13 12 41 41 H 1.08996 * 117.49325 * 107.50248 * 23 22 13 42 42 H 1.08998 * 117.49851 * 252.52214 * 23 22 13 43 43 H 1.09009 * 109.46121 * 58.27645 * 24 11 10 44 44 H 1.08996 * 109.46489 * 178.24285 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.5857 3.4695 0.8916 8 6 3.4496 3.6861 -1.2489 9 6 4.0861 5.0784 -1.2705 10 6 5.6097 4.9380 -1.2375 11 7 6.0099 4.2162 -0.0230 12 6 7.4722 4.1834 0.1123 13 6 7.9800 5.5743 0.4977 14 6 8.3590 6.4699 -0.6535 15 1 8.1122 7.5210 -0.6238 16 6 9.0206 5.9476 -1.7445 17 7 9.5238 4.7337 -1.6893 18 14 9.2024 6.9640 -3.3012 19 1 8.5539 8.2859 -3.1079 20 1 10.6440 7.1593 -3.5994 21 1 8.5544 6.2551 -4.4338 22 6 7.3638 6.2341 1.7330 23 6 8.7953 5.6966 1.7875 24 6 5.4490 2.8592 -0.0027 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.3641 3.7820 -1.2285 31 1 3.7507 3.1339 -2.1391 32 1 3.7539 5.6440 -0.4000 33 1 3.7885 5.6012 -2.1796 34 1 6.0658 5.9280 -1.2385 35 1 5.9425 4.3843 -2.1155 36 1 7.9182 3.8837 -0.8360 37 1 7.7495 3.4680 0.8864 38 1 10.0513 4.3933 -2.4286 39 1 7.2328 7.3160 1.7131 40 1 6.5963 5.6775 2.2708 41 1 9.6060 6.4249 1.8035 42 1 8.9695 4.7861 2.3609 43 1 5.7825 2.3151 -0.8864 44 1 5.7882 2.3393 0.8932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:29 Heat of formation + Delta-G solvation = -68.621890 kcal Electronic energy + Delta-G solvation = -23125.131251 eV Core-core repulsion = 19849.914284 eV Total energy + Delta-G solvation = -3275.216967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61780 -38.41336 -36.67976 -36.04373 -32.68950 -32.16617 -31.74806 -30.62150 -26.12761 -25.40673 -24.59541 -22.82164 -22.36000 -20.94892 -20.86255 -19.31774 -18.79188 -17.55022 -16.57674 -16.49956 -15.90930 -14.97768 -14.66210 -14.36903 -14.08703 -13.98861 -13.69561 -13.37638 -13.05053 -13.00466 -12.78899 -12.48709 -12.12548 -12.00850 -11.77690 -11.50235 -11.17517 -11.10599 -10.90483 -10.73652 -10.64355 -10.45908 -10.42594 -10.31334 -10.15714 -9.98337 -9.88652 -9.22636 -8.83604 -8.60904 -8.10890 -7.31012 -6.03237 -4.07053 2.27869 2.63998 3.23287 3.33503 3.36838 4.35249 4.55769 4.72113 4.74985 4.80704 4.95243 5.04053 5.06675 5.15845 5.30891 5.54502 5.56180 5.58282 5.66695 5.74054 5.75510 5.89151 6.11007 6.13550 6.20746 6.22593 6.31692 6.40190 6.44526 6.57991 6.69752 6.76671 6.89243 6.91067 7.04751 7.15821 7.26485 7.50210 7.58478 7.80193 7.91388 8.12865 8.16592 8.50953 8.89858 9.49964 10.96076 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.004348 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.892968 B = 6438.187267 C = 6827.050438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.468 3.532 5 O -0.508 6.508 6 C -0.074 4.074 7 H 0.115 0.885 8 C -0.108 4.108 9 C -0.116 4.116 10 C 0.056 3.944 11 N -0.531 5.531 12 C 0.084 3.916 13 C 0.060 3.940 14 C -0.481 4.481 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.878 5.878 18 Si 0.884 3.116 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.190 4.190 23 C -0.205 4.205 24 C 0.073 3.927 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.023 0.977 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 -5.842 1.477 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.311 3.689 5 O -0.395 6.395 6 C -0.093 4.093 7 H 0.133 0.867 8 C -0.146 4.146 9 C -0.153 4.153 10 C -0.072 4.072 11 N -0.255 5.255 12 C -0.042 4.042 13 C 0.059 3.941 14 C -0.519 4.519 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.516 5.516 18 Si 0.712 3.288 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.208 1.208 22 C -0.227 4.227 23 C -0.243 4.243 24 C -0.056 4.056 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.041 0.959 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.366 -6.070 1.721 16.611 hybrid contribution 0.606 -0.265 -1.390 1.539 sum -14.760 -6.336 0.331 16.065 Atomic orbital electron populations 1.21793 0.92748 1.02787 1.03519 1.22986 0.95263 0.80718 1.02491 1.86523 1.24952 1.31912 1.84169 1.24006 0.80222 0.92980 0.71740 1.90658 1.60373 1.43324 1.45187 1.21135 0.97205 0.88534 1.02439 0.86743 1.21557 1.00429 0.97074 0.95509 1.21647 0.96582 0.95111 1.02006 1.22182 0.93290 1.01478 0.90280 1.61895 1.13106 1.12721 1.37796 1.21903 0.83008 0.96311 1.03013 1.18842 0.95803 0.92898 0.86508 1.20645 1.36666 0.94319 1.00261 0.92166 1.24968 0.95150 0.94848 0.98380 1.69836 1.33205 1.16423 1.32148 0.86649 0.77915 0.80625 0.83623 1.19529 1.21056 1.20833 1.22662 0.94996 0.98399 1.06674 1.22989 0.93610 1.01041 1.06708 1.21804 0.90244 0.92046 1.01488 0.91495 0.90422 0.91471 0.91403 0.91362 0.91127 0.92109 0.91024 0.91654 0.87775 0.95907 0.88813 0.94439 0.92887 0.91406 0.90894 0.90847 0.92089 0.94759 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.15 0.38 -0.70 16 2 C 0.06 0.61 6.19 37.15 0.23 0.84 16 3 O -0.36 -4.61 10.15 -39.26 -0.40 -5.01 16 4 C 0.47 7.02 7.26 36.00 0.26 7.28 16 5 O -0.51 -9.00 15.74 -18.75 -0.30 -9.29 16 6 C -0.07 -1.09 2.79 -91.69 -0.26 -1.34 16 7 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 8 C -0.11 -1.47 5.21 -26.61 -0.14 -1.61 16 9 C -0.12 -1.72 6.09 -26.66 -0.16 -1.88 16 10 C 0.06 1.07 5.22 -3.84 -0.02 1.05 16 11 N -0.53 -10.56 4.37 -234.67 -1.03 -11.58 16 12 C 0.08 1.95 4.76 -3.83 -0.02 1.93 16 13 C 0.06 1.46 1.54 -155.62 -0.24 1.22 16 14 C -0.48 -12.56 7.26 -34.44 -0.25 -12.81 16 15 H 0.06 1.59 7.84 -52.49 -0.41 1.18 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 17 N -0.88 -23.89 10.91 55.43 0.60 -23.28 16 18 Si 0.88 20.32 29.56 -169.99 -5.02 15.29 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C -0.19 -4.15 9.71 -26.73 -0.26 -4.41 16 23 C -0.20 -4.74 9.89 -26.69 -0.26 -5.00 16 24 C 0.07 1.31 4.02 -3.83 -0.02 1.30 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.10 2.26 5.99 -51.93 -0.31 1.95 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 2.45 5.19 -51.93 -0.27 2.18 16 37 H 0.04 0.87 7.59 -51.93 -0.39 0.47 16 38 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 43 H 0.03 0.67 8.08 -51.92 -0.42 0.25 16 44 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -28.09 350.37 -9.39 -37.48 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.69 Total: 3.55 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.84 Total: -12.43 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.42 Total: -34.87 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.69 Total: -14.31 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.09 -9.39 -37.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.139 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds