Wall clock time and date at job start Tue Mar 31 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99735 * 2 1 4 4 O 1.20823 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99562 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46818 * 173.88767 * 5 3 2 7 7 H 1.09009 * 109.45237 * 54.74997 * 6 5 3 8 8 C 1.53034 * 109.46485 * 294.77309 * 6 5 3 9 9 C 1.53114 * 109.27883 * 180.80262 * 8 6 5 10 10 C 1.53122 * 109.15993 * 57.65842 * 9 8 6 11 11 C 1.53039 * 109.27386 * 302.34077 * 10 9 8 12 12 N 1.46846 * 109.52325 * 59.18263 * 11 10 9 13 13 C 1.46895 * 111.00150 * 174.15725 * 12 11 10 14 14 C 1.53008 * 109.47153 * 287.95971 * 13 12 11 15 15 C 1.50695 * 115.54916 * 67.48663 * 14 13 12 16 16 H 1.07993 * 120.00020 * 220.44287 * 15 14 13 17 17 C 1.37875 * 119.99877 * 40.44767 * 15 14 13 18 18 N 1.31521 * 120.00294 * 15.22385 * 17 15 14 19 19 Si 1.86801 * 119.99939 * 195.22587 * 17 15 14 20 20 H 1.48505 * 109.47365 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47140 * 299.99630 * 19 17 15 22 22 H 1.48498 * 109.47180 * 59.99503 * 19 17 15 23 23 C 1.53001 * 117.51715 * 213.18993 * 14 13 12 24 24 C 1.52998 * 60.00105 * 107.47892 * 23 14 13 25 25 H 1.09007 * 109.46873 * 60.00674 * 1 2 3 26 26 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47539 * 300.00141 * 1 2 3 28 28 H 1.08997 * 109.46932 * 53.88761 * 5 3 2 29 29 H 1.08999 * 109.47069 * 293.88600 * 5 3 2 30 30 H 1.08995 * 109.50576 * 300.75072 * 8 6 5 31 31 H 1.09011 * 109.50293 * 60.82662 * 8 6 5 32 32 H 1.09009 * 109.52289 * 177.55744 * 9 8 6 33 33 H 1.08997 * 109.52818 * 297.68703 * 9 8 6 34 34 H 1.08998 * 109.50666 * 62.28320 * 10 9 8 35 35 H 1.09005 * 109.50203 * 182.40345 * 10 9 8 36 36 H 1.08999 * 109.46519 * 299.16566 * 11 10 9 37 37 H 1.09001 * 109.46038 * 179.19218 * 11 10 9 38 38 H 1.09000 * 109.47391 * 167.95965 * 13 12 11 39 39 H 1.08998 * 109.47357 * 47.96070 * 13 12 11 40 40 H 0.96999 * 119.99906 * 174.97415 * 18 17 15 41 41 H 1.08991 * 117.49785 * 214.97403 * 23 14 13 42 42 H 1.08999 * 117.49745 * 359.97438 * 23 14 13 43 43 H 1.09004 * 117.49869 * 252.51236 * 24 23 14 44 44 H 1.08997 * 117.51758 * 107.48025 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0006 2.7338 -0.1531 7 1 3.5298 3.3365 0.6237 8 6 3.5734 3.2508 -1.5287 9 6 4.0276 4.7046 -1.6858 10 6 5.5458 4.7795 -1.5011 11 6 5.9158 4.2183 -0.1263 12 7 5.4606 2.8257 -0.0260 13 6 5.9198 2.2107 1.2265 14 6 7.4268 1.9577 1.1480 15 6 8.2920 3.1910 1.1149 16 1 9.1530 3.2293 0.4641 17 6 7.9845 4.2705 1.9155 18 7 7.1377 4.1302 2.9120 19 14 8.7704 5.9326 1.5849 20 1 8.2785 6.9195 2.5795 21 1 10.2465 5.8129 1.6956 22 1 8.4118 6.3865 0.2172 23 6 7.9760 0.7286 1.8751 24 6 7.8982 0.7422 0.3471 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.9611 0.6888 -0.8293 29 1 3.9505 0.8785 0.9405 30 1 4.0328 2.6400 -2.3058 31 1 2.4883 3.1964 -1.6170 32 1 3.7636 5.0632 -2.6808 33 1 3.5373 5.3228 -0.9338 34 1 6.0363 4.1928 -2.2777 35 1 5.8699 5.8181 -1.5694 36 1 5.4360 4.8140 0.6503 37 1 6.9974 4.2570 0.0027 38 1 5.4000 1.2648 1.3787 39 1 5.7068 2.8804 2.0596 40 1 6.9766 4.8692 3.5193 41 1 8.9631 0.8122 2.3295 42 1 7.2638 0.1003 2.4099 43 1 7.1348 0.1226 -0.1235 44 1 8.8341 0.8348 -0.2039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:34 Heat of formation + Delta-G solvation = -53.791786 kcal Electronic energy + Delta-G solvation = -23887.048134 eV Core-core repulsion = 20612.474249 eV Total energy + Delta-G solvation = -3274.573886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50159 -38.65761 -36.55114 -35.99826 -32.84433 -32.44091 -31.46825 -28.55301 -26.79466 -25.88442 -25.48198 -22.27010 -21.87411 -21.02434 -20.15686 -19.08307 -18.83596 -17.50091 -16.45658 -16.43275 -16.13303 -14.93477 -14.74045 -14.21035 -14.11402 -13.84846 -13.71366 -13.16427 -13.07780 -12.70644 -12.50253 -12.27702 -12.10668 -11.88477 -11.56239 -11.34446 -11.09795 -10.91058 -10.82027 -10.65556 -10.48742 -10.39271 -10.30967 -10.21126 -10.07555 -9.73955 -9.44231 -9.24604 -8.85545 -8.58097 -8.03923 -7.18364 -6.08618 -4.04614 2.33468 2.78617 3.23882 3.30683 3.33863 4.30748 4.68616 4.93565 5.01839 5.03163 5.09043 5.19063 5.23754 5.44550 5.50863 5.61032 5.65986 5.72394 5.83084 6.02362 6.13628 6.21569 6.26800 6.36713 6.39892 6.44712 6.49487 6.56096 6.61606 6.69639 6.71093 6.83324 6.87738 7.01825 7.06280 7.25202 7.42611 7.47246 7.53289 7.85539 7.91450 8.22991 8.27180 8.47453 8.85862 9.43985 10.90529 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.005990 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.931896 B = 4673.018659 C = 5428.858066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.506 6.506 5 C -0.114 4.114 6 C 0.096 3.904 7 H 0.041 0.959 8 C -0.111 4.111 9 C -0.116 4.116 10 C -0.120 4.120 11 C 0.041 3.959 12 N -0.516 5.516 13 C 0.077 3.923 14 C 0.064 3.936 15 C -0.483 4.483 16 H 0.061 0.939 17 C 0.076 3.924 18 N -0.872 5.872 19 Si 0.874 3.126 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.268 1.268 23 C -0.203 4.203 24 C -0.197 4.197 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.134 0.866 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 -4.712 -6.019 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.394 6.394 5 C -0.152 4.152 6 C -0.013 4.013 7 H 0.059 0.941 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.158 4.158 11 C -0.086 4.086 12 N -0.241 5.241 13 C -0.049 4.049 14 C 0.063 3.937 15 C -0.521 4.521 16 H 0.079 0.921 17 C -0.127 4.127 18 N -0.509 5.509 19 Si 0.700 3.300 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.193 1.193 23 C -0.241 4.241 24 C -0.235 4.235 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.152 0.848 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.663 -4.531 -6.280 12.383 hybrid contribution -0.230 1.291 0.663 1.469 sum -9.894 -3.240 -5.617 11.829 Atomic orbital electron populations 1.23206 0.76948 1.03333 1.02377 1.86537 1.23021 1.34018 1.84390 1.24038 0.92483 0.81013 0.71802 1.90635 1.67348 1.36201 1.45205 1.21681 0.85962 1.00974 1.06540 1.21304 0.90913 0.91725 0.97385 0.94074 1.21655 1.00140 0.96513 0.96532 1.21536 0.97083 0.96430 1.00343 1.21691 0.94747 0.99822 0.99546 1.22790 1.06041 0.86488 0.93249 1.61841 1.06461 1.18271 1.37517 1.21905 0.94629 0.97327 0.91078 1.18779 0.91512 0.87332 0.96081 1.20425 1.10796 0.97208 1.23630 0.92058 1.24948 0.94657 0.98576 0.94565 1.69855 1.35169 1.32033 1.13826 0.86961 0.79904 0.84300 0.78787 1.21135 1.20104 1.19348 1.22924 1.01584 1.06366 0.93266 1.22733 1.01419 1.06145 0.93173 0.92096 0.88383 0.92067 0.87222 0.86805 0.91802 0.91679 0.92950 0.92832 0.91654 0.92847 0.96368 0.84846 0.94396 0.89749 0.92689 0.90658 0.92078 0.91408 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.84 10.57 -39.26 -0.41 -5.26 16 3 C 0.46 7.07 7.57 36.01 0.27 7.35 16 4 O -0.51 -8.81 13.97 -18.75 -0.26 -9.07 16 5 C -0.11 -1.77 5.10 -27.88 -0.14 -1.91 16 6 C 0.10 1.73 1.56 -67.73 -0.11 1.62 16 7 H 0.04 0.84 7.86 -51.92 -0.41 0.43 16 8 C -0.11 -1.81 5.11 -26.65 -0.14 -1.95 16 9 C -0.12 -1.90 6.00 -26.61 -0.16 -2.06 16 10 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 11 C 0.04 0.88 4.36 -3.83 -0.02 0.86 16 12 N -0.52 -10.52 4.45 -226.69 -1.01 -11.53 16 13 C 0.08 1.71 4.53 -3.82 -0.02 1.70 16 14 C 0.06 1.50 1.87 -155.66 -0.29 1.21 16 15 C -0.48 -12.34 6.77 -34.44 -0.23 -12.57 16 16 H 0.06 1.59 7.86 -52.49 -0.41 1.18 16 17 C 0.08 1.93 3.42 -17.82 -0.06 1.87 16 18 N -0.87 -23.03 11.07 55.43 0.61 -22.42 16 19 Si 0.87 19.91 28.78 -169.99 -4.89 15.02 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 C -0.20 -4.50 9.91 -26.73 -0.27 -4.77 16 24 C -0.20 -4.19 9.95 -26.73 -0.27 -4.46 16 25 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.11 1.78 5.71 -51.93 -0.30 1.48 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.06 6.22 -51.92 -0.32 0.74 16 32 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.13 3.18 3.10 -51.93 -0.16 3.02 16 38 H 0.04 0.77 5.22 -51.93 -0.27 0.50 16 39 H 0.08 2.13 5.62 -51.93 -0.29 1.84 16 40 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 41 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -27.15 336.84 -8.62 -35.77 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.22 Total: 6.46 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.52 Total: -14.04 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: -0.39 Total: -33.95 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.68 Total: -14.33 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.89 Total: 15.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.15 -8.62 -35.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.026 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds