Wall clock time and date at job start Tue Mar 31 2020 06:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99735 * 2 1 4 4 O 1.20823 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99562 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46818 * 173.88767 * 5 3 2 7 7 H 1.09009 * 109.45237 * 54.74997 * 6 5 3 8 8 C 1.53034 * 109.46485 * 294.77309 * 6 5 3 9 9 C 1.53114 * 109.27883 * 180.80262 * 8 6 5 10 10 C 1.53122 * 109.15993 * 57.65842 * 9 8 6 11 11 C 1.53039 * 109.27386 * 302.34077 * 10 9 8 12 12 N 1.46846 * 109.52325 * 59.18263 * 11 10 9 13 13 C 1.46895 * 111.00150 * 174.15725 * 12 11 10 14 14 C 1.53008 * 109.47153 * 287.95971 * 13 12 11 15 15 C 1.50695 * 115.54916 * 67.48663 * 14 13 12 16 16 H 1.07993 * 120.00020 * 220.44287 * 15 14 13 17 17 C 1.37875 * 119.99877 * 40.44767 * 15 14 13 18 18 N 1.31521 * 120.00294 * 15.22385 * 17 15 14 19 19 Si 1.86801 * 119.99939 * 195.22587 * 17 15 14 20 20 H 1.48505 * 109.47365 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47140 * 299.99630 * 19 17 15 22 22 H 1.48498 * 109.47180 * 59.99503 * 19 17 15 23 23 C 1.53001 * 117.51715 * 213.18993 * 14 13 12 24 24 C 1.52998 * 60.00105 * 107.47892 * 23 14 13 25 25 H 1.09007 * 109.46873 * 60.00674 * 1 2 3 26 26 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47539 * 300.00141 * 1 2 3 28 28 H 1.08997 * 109.46932 * 53.88761 * 5 3 2 29 29 H 1.08999 * 109.47069 * 293.88600 * 5 3 2 30 30 H 1.08995 * 109.50576 * 300.75072 * 8 6 5 31 31 H 1.09011 * 109.50293 * 60.82662 * 8 6 5 32 32 H 1.09009 * 109.52289 * 177.55744 * 9 8 6 33 33 H 1.08997 * 109.52818 * 297.68703 * 9 8 6 34 34 H 1.08998 * 109.50666 * 62.28320 * 10 9 8 35 35 H 1.09005 * 109.50203 * 182.40345 * 10 9 8 36 36 H 1.08999 * 109.46519 * 299.16566 * 11 10 9 37 37 H 1.09001 * 109.46038 * 179.19218 * 11 10 9 38 38 H 1.09000 * 109.47391 * 167.95965 * 13 12 11 39 39 H 1.08998 * 109.47357 * 47.96070 * 13 12 11 40 40 H 0.96999 * 119.99906 * 174.97415 * 18 17 15 41 41 H 1.08991 * 117.49785 * 214.97403 * 23 14 13 42 42 H 1.08999 * 117.49745 * 359.97438 * 23 14 13 43 43 H 1.09004 * 117.49869 * 252.51236 * 24 23 14 44 44 H 1.08997 * 117.51758 * 107.48025 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0006 2.7338 -0.1531 7 1 3.5298 3.3365 0.6237 8 6 3.5734 3.2508 -1.5287 9 6 4.0276 4.7046 -1.6858 10 6 5.5458 4.7795 -1.5011 11 6 5.9158 4.2183 -0.1263 12 7 5.4606 2.8257 -0.0260 13 6 5.9198 2.2107 1.2265 14 6 7.4268 1.9577 1.1480 15 6 8.2920 3.1910 1.1149 16 1 9.1530 3.2293 0.4641 17 6 7.9845 4.2705 1.9155 18 7 7.1377 4.1302 2.9120 19 14 8.7704 5.9326 1.5849 20 1 8.2785 6.9195 2.5795 21 1 10.2465 5.8129 1.6956 22 1 8.4118 6.3865 0.2172 23 6 7.9760 0.7286 1.8751 24 6 7.8982 0.7422 0.3471 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.9611 0.6888 -0.8293 29 1 3.9505 0.8785 0.9405 30 1 4.0328 2.6400 -2.3058 31 1 2.4883 3.1964 -1.6170 32 1 3.7636 5.0632 -2.6808 33 1 3.5373 5.3228 -0.9338 34 1 6.0363 4.1928 -2.2777 35 1 5.8699 5.8181 -1.5694 36 1 5.4360 4.8140 0.6503 37 1 6.9974 4.2570 0.0027 38 1 5.4000 1.2648 1.3787 39 1 5.7068 2.8804 2.0596 40 1 6.9766 4.8692 3.5193 41 1 8.9631 0.8122 2.3295 42 1 7.2638 0.1003 2.4099 43 1 7.1348 0.1226 -0.1235 44 1 8.8341 0.8348 -0.2039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:33 Heat of formation + Delta-G solvation = -68.212092 kcal Electronic energy + Delta-G solvation = -23887.673446 eV Core-core repulsion = 20612.474249 eV Total energy + Delta-G solvation = -3275.199197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70546 -40.15740 -38.01412 -37.38061 -34.44224 -34.13881 -33.03166 -29.71790 -27.95142 -27.73175 -27.11717 -23.74177 -23.28006 -22.74343 -21.48132 -20.78059 -20.40617 -18.69464 -18.02880 -17.57925 -17.54827 -16.67937 -16.38907 -15.72106 -15.55952 -15.36225 -15.08924 -14.61340 -14.38339 -14.22372 -13.90535 -13.77445 -13.48350 -13.30000 -12.94620 -12.88864 -12.86758 -12.58623 -12.28193 -12.22789 -11.97239 -11.90744 -11.75819 -11.67907 -11.53521 -11.23358 -11.07340 -10.94801 -10.64998 -10.37485 -9.88359 -8.90429 -8.03390 -6.03623 1.14897 1.39098 1.43807 1.47798 1.72136 2.40826 3.01916 3.26309 3.66577 3.83620 3.86838 4.03108 4.12079 4.25255 4.31995 4.33659 4.36434 4.37871 4.52441 4.65174 4.69982 4.73062 4.75867 4.87903 4.91341 4.95899 5.02589 5.11897 5.12996 5.15534 5.17594 5.28806 5.30834 5.40247 5.43649 5.57829 5.63382 5.69079 5.73123 6.01309 6.51380 6.51765 6.61676 6.73863 6.91415 7.46691 8.93173 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.005990 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.931896 B = 4673.018659 C = 5428.858066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.533 6.533 5 C -0.109 4.109 6 C 0.096 3.904 7 H 0.011 0.989 8 C -0.104 4.104 9 C -0.113 4.113 10 C -0.116 4.116 11 C 0.044 3.956 12 N -0.509 5.509 13 C 0.086 3.914 14 C 0.034 3.966 15 C -0.493 4.493 16 H 0.050 0.950 17 C 0.048 3.952 18 N -0.895 5.895 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.205 4.205 24 C -0.174 4.174 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.058 0.942 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.059 0.941 36 H -0.013 1.013 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.258 0.742 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 -5.919 -7.822 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.422 6.422 5 C -0.147 4.147 6 C -0.013 4.013 7 H 0.029 0.971 8 C -0.141 4.141 9 C -0.151 4.151 10 C -0.153 4.153 11 C -0.084 4.084 12 N -0.234 5.234 13 C -0.041 4.041 14 C 0.033 3.967 15 C -0.530 4.530 16 H 0.068 0.932 17 C -0.153 4.153 18 N -0.532 5.532 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.199 1.199 22 H -0.184 1.184 23 C -0.243 4.243 24 C -0.212 4.212 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.006 0.994 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.547 -5.759 -8.097 14.491 hybrid contribution 0.012 1.608 1.245 2.034 sum -10.535 -4.151 -6.852 13.235 Atomic orbital electron populations 1.23552 0.74813 1.05716 1.02467 1.86513 1.25044 1.32618 1.83775 1.23847 0.92264 0.81225 0.71184 1.90631 1.67849 1.37171 1.46580 1.21561 0.86628 0.99240 1.07227 1.21328 0.89038 0.93283 0.97638 0.97133 1.21615 1.00417 0.96563 0.95555 1.21519 0.95485 0.96482 1.01579 1.21647 0.96217 1.00067 0.97419 1.22631 1.04305 0.86972 0.94443 1.61875 1.07997 1.17357 1.36130 1.21701 0.94226 0.97455 0.90712 1.18915 0.92043 0.87434 0.98301 1.20569 1.10754 0.98497 1.23156 0.93184 1.25355 0.95025 1.00614 0.94331 1.69978 1.36386 1.32314 1.14556 0.86313 0.79192 0.81616 0.78884 1.21541 1.19929 1.18419 1.22906 1.01190 1.05869 0.94343 1.22725 1.01691 1.04316 0.92437 0.91726 0.84895 0.92341 0.85154 0.87037 0.90398 0.91262 0.90097 0.94043 0.90845 0.92219 0.99430 0.87120 0.92547 0.93273 0.93206 0.91891 0.90674 0.89177 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -8.82 10.57 -51.41 -0.54 -9.36 16 3 C 0.47 13.59 7.57 71.24 0.54 14.13 16 4 O -0.53 -18.00 13.97 21.97 0.31 -17.70 16 5 C -0.11 -3.19 5.10 29.85 0.15 -3.04 16 6 C 0.10 3.39 1.56 44.94 0.07 3.46 16 7 H 0.01 0.44 7.86 -2.38 -0.02 0.42 16 8 C -0.10 -3.20 5.11 30.64 0.16 -3.04 16 9 C -0.11 -3.51 6.00 30.67 0.18 -3.32 16 10 C -0.12 -4.05 6.09 30.65 0.19 -3.86 16 11 C 0.04 1.89 4.36 86.33 0.38 2.27 16 12 N -0.51 -20.52 4.45 -871.11 -3.87 -24.40 16 13 C 0.09 3.83 4.53 86.31 0.39 4.22 16 14 C 0.03 1.58 1.87 -52.93 -0.10 1.48 16 15 C -0.49 -25.42 6.77 25.60 0.17 -25.24 16 16 H 0.05 2.63 7.86 -2.91 -0.02 2.60 16 17 C 0.05 2.48 3.42 84.65 0.29 2.77 16 18 N -0.89 -48.69 11.07 21.45 0.24 -48.46 16 19 Si 0.91 41.36 28.78 68.60 1.97 43.34 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.20 -8.91 9.91 30.59 0.30 -8.60 16 24 C -0.17 -7.08 9.95 30.59 0.30 -6.78 16 25 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 26 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.11 3.32 5.71 -2.39 -0.01 3.30 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.11 6.22 -2.38 -0.01 2.10 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.11 5.34 3.10 -2.39 -0.01 5.33 16 38 H 0.06 2.24 5.22 -2.39 -0.01 2.23 16 39 H 0.05 2.56 5.62 -2.39 -0.01 2.55 16 40 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 41 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 44 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -58.87 336.84 3.30 -55.57 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.97 Total: 24.89 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.23 Total: -23.89 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -3.63 Total: -72.85 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.24 Total: -27.06 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.97 Total: 43.34 kcal Total: -58.87 3.30 -55.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.644 kcal (2) G-P(sol) polarization free energy of solvation -58.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds