Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46992 * 2 1 4 4 C 1.46851 * 110.99736 * 71.42312 * 3 2 1 5 5 C 1.53039 * 109.52226 * 185.83926 * 4 3 2 6 6 C 1.53116 * 109.28108 * 300.82283 * 5 4 3 7 7 C 1.53117 * 109.16094 * 57.64972 * 6 5 4 8 8 C 1.46844 * 111.00495 * 195.63232 * 3 2 1 9 9 H 1.08997 * 109.46163 * 294.17320 * 8 3 2 10 10 C 1.50704 * 109.45776 * 54.14298 * 8 3 2 11 11 O 1.20817 * 120.00155 * 28.99745 * 10 8 3 12 12 O 1.34225 * 119.99957 * 208.98944 * 10 8 3 13 13 C 1.45196 * 117.00382 * 185.09889 * 12 10 8 14 14 C 1.53005 * 109.47512 * 175.11707 * 13 12 10 15 15 C 1.50688 * 115.54903 * 304.64898 * 14 13 12 16 16 H 1.08009 * 120.00284 * 270.83497 * 15 14 13 17 17 C 1.37885 * 120.00203 * 90.56435 * 15 14 13 18 18 N 1.31514 * 120.00196 * 184.44453 * 17 15 14 19 19 Si 1.86797 * 119.99772 * 4.44125 * 17 15 14 20 20 H 1.48507 * 109.47035 * 93.89963 * 19 17 15 21 21 H 1.48496 * 109.47044 * 213.89997 * 19 17 15 22 22 H 1.48505 * 109.47105 * 333.90250 * 19 17 15 23 23 C 1.52996 * 117.51474 * 90.34862 * 14 13 12 24 24 C 1.52995 * 117.49578 * 158.97688 * 14 13 12 25 25 H 1.09001 * 109.46629 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46694 * 299.99369 * 1 2 3 27 27 H 1.08994 * 109.47596 * 59.99856 * 1 2 3 28 28 H 1.08997 * 109.47093 * 240.00776 * 2 1 3 29 29 H 1.08994 * 109.47596 * 120.00144 * 2 1 3 30 30 H 1.08999 * 109.46503 * 305.85025 * 4 3 2 31 31 H 1.08994 * 109.46213 * 65.83524 * 4 3 2 32 32 H 1.09007 * 109.50241 * 60.76348 * 5 4 3 33 33 H 1.09003 * 109.50517 * 180.83614 * 5 4 3 34 34 H 1.09001 * 109.52666 * 177.56095 * 6 5 4 35 35 H 1.09004 * 109.52232 * 297.69097 * 6 5 4 36 36 H 1.08996 * 109.50623 * 182.40326 * 7 6 5 37 37 H 1.09003 * 109.50509 * 62.29204 * 7 6 5 38 38 H 1.09009 * 109.46819 * 55.11825 * 13 12 10 39 39 H 1.08997 * 109.47097 * 295.12304 * 13 12 10 40 40 H 0.96996 * 120.00162 * 179.97438 * 18 17 15 41 41 H 1.08995 * 117.50072 * 214.97077 * 23 14 13 42 42 H 1.09006 * 117.49859 * 359.97438 * 23 14 13 43 43 H 1.08998 * 117.50451 * 359.97438 * 24 14 13 44 44 H 1.08999 * 117.49654 * 144.97872 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7833 2.0267 1.2996 5 6 2.1708 3.5050 1.2180 6 6 3.6481 3.6199 0.8322 7 6 3.8767 2.9020 -0.5007 8 6 3.4398 1.4412 -0.3694 9 1 4.0352 0.9521 0.4015 10 6 3.6446 0.7355 -1.6852 11 8 2.7506 0.6999 -2.4971 12 8 4.8202 0.1467 -1.9550 13 6 4.9866 -0.4150 -3.2836 14 6 6.4186 -0.9294 -3.4443 15 6 7.5054 0.0791 -3.1749 16 1 7.8750 0.7019 -3.9762 17 6 8.0243 0.2106 -1.9042 18 7 8.9097 1.1492 -1.6493 19 14 7.4697 -0.9442 -0.5447 20 1 8.4114 -2.0888 -0.4527 21 1 7.4506 -0.2138 0.7480 22 1 6.1063 -1.4481 -0.8488 23 6 6.6942 -2.3846 -3.0605 24 6 6.6765 -1.9721 -4.5338 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.7283 1.9417 1.5601 31 1 2.3866 1.5349 2.0625 32 1 1.5583 4.0007 0.4647 33 1 2.0092 3.9776 2.1869 34 1 3.9174 4.6712 0.7307 35 1 4.2633 3.1593 1.6052 36 1 4.9346 2.9435 -0.7597 37 1 3.2912 3.3881 -1.2811 38 1 4.7910 0.3545 -4.0305 39 1 4.2869 -1.2396 -3.4196 40 1 9.2744 1.2420 -0.7553 41 1 7.6616 -2.6126 -2.6133 42 1 5.8553 -2.9757 -2.6931 43 1 5.8261 -2.2920 -5.1358 44 1 7.6323 -1.9284 -5.0559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126313202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = -56.944468 kcal Electronic energy + Delta-G solvation = -23705.189095 eV Core-core repulsion = 20430.478499 eV Total energy + Delta-G solvation = -3274.710596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42146 -38.57896 -36.99525 -35.34130 -34.28975 -32.07145 -31.42008 -29.80940 -27.34644 -25.46087 -24.67517 -23.92254 -21.82474 -21.53348 -20.57532 -19.55792 -19.08776 -17.25543 -16.80609 -16.23384 -15.73591 -15.19215 -14.98009 -14.67995 -14.55129 -14.08739 -13.73823 -13.50523 -13.36066 -13.15393 -12.66844 -12.57171 -12.26950 -11.95385 -11.86889 -11.78943 -11.34720 -11.14857 -11.13403 -10.89047 -10.85480 -10.65284 -10.43284 -10.32892 -10.29088 -9.92373 -9.75927 -9.35745 -9.11936 -8.63607 -8.40707 -8.36904 -6.08673 -4.13865 2.66840 2.99649 3.37408 3.45032 3.58138 3.89502 4.51168 4.72514 4.74848 4.87290 4.92318 5.05177 5.17456 5.19489 5.22640 5.33214 5.35312 5.46785 5.52478 5.57339 5.67402 5.68272 5.80257 5.86652 5.91543 5.93042 5.98919 6.03073 6.06756 6.12006 6.21110 6.22258 6.28481 6.37242 6.39374 6.62537 6.87109 6.94104 7.01473 7.02919 7.20175 7.71457 8.38777 8.46990 8.91528 9.55880 11.02115 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.006320 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.794985 B = 4429.379953 C = 5134.064396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 N -0.518 5.518 4 C 0.056 3.944 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.109 4.109 8 C 0.095 3.905 9 H 0.069 0.931 10 C 0.457 3.543 11 O -0.505 6.505 12 O -0.325 6.325 13 C 0.112 3.888 14 C -0.004 4.004 15 C -0.490 4.490 16 H 0.077 0.923 17 C 0.088 3.912 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.289 1.289 21 H -0.298 1.298 22 H -0.242 1.242 23 C -0.198 4.198 24 C -0.169 4.169 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 0.453 6.571 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 N -0.245 5.245 4 C -0.071 4.071 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.014 4.014 9 H 0.087 0.913 10 C 0.299 3.701 11 O -0.394 6.394 12 O -0.239 6.239 13 C 0.038 3.962 14 C -0.005 4.005 15 C -0.527 4.527 16 H 0.095 0.905 17 C -0.115 4.115 18 N -0.534 5.534 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.226 1.226 22 H -0.166 1.166 23 C -0.235 4.235 24 C -0.207 4.207 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.060 0.747 6.082 15.338 hybrid contribution 0.291 -1.136 1.289 1.743 sum -13.770 -0.389 7.370 15.623 Atomic orbital electron populations 1.21697 0.94415 1.01263 1.02332 1.22220 0.96778 0.88479 1.01138 1.61743 1.15030 1.17701 1.30036 1.22166 1.01242 0.94970 0.88738 1.21628 0.96768 0.95499 1.01687 1.21571 0.96327 1.00890 0.96824 1.21566 1.02764 0.91421 0.98900 1.21200 0.90012 0.97426 0.92761 0.91339 1.23338 0.81184 0.76353 0.89183 1.90590 1.43452 1.56552 1.48804 1.86707 1.35109 1.65893 1.36199 1.22783 0.97208 0.96200 0.80013 1.19394 0.92444 0.88843 0.99814 1.20145 1.17349 1.18981 0.96260 0.90461 1.24917 0.93664 0.94707 0.98178 1.69912 1.29633 1.32227 1.21578 0.86796 0.80824 0.80537 0.80687 1.21620 1.22584 1.16567 1.23001 1.01689 1.00693 0.98146 1.22877 1.01775 1.04865 0.91133 0.92519 0.92961 0.91560 0.90246 0.94963 0.90085 0.94754 0.90844 0.91410 0.90980 0.91843 0.89518 0.90272 0.91582 0.93644 0.92675 0.89378 0.90756 0.90749 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.95 37.16 0.37 -1.22 16 2 C 0.04 0.58 5.32 -3.82 -0.02 0.56 16 3 N -0.52 -7.54 4.21 -228.08 -0.96 -8.50 16 4 C 0.06 0.64 5.30 -3.83 -0.02 0.62 16 5 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 6 C -0.12 -1.42 6.00 -26.61 -0.16 -1.58 16 7 C -0.11 -1.65 5.36 -26.66 -0.14 -1.80 16 8 C 0.10 1.59 2.34 -68.88 -0.16 1.43 16 9 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 10 C 0.46 9.11 5.82 36.01 0.21 9.32 16 11 O -0.51 -10.64 15.11 -18.74 -0.28 -10.92 16 12 O -0.32 -7.24 7.18 -39.25 -0.28 -7.53 16 13 C 0.11 2.43 5.36 37.16 0.20 2.63 16 14 C 0.00 -0.09 1.36 -155.67 -0.21 -0.30 16 15 C -0.49 -13.54 9.23 -34.44 -0.32 -13.86 16 16 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 17 C 0.09 2.50 5.45 -17.82 -0.10 2.41 16 18 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 19 Si 0.88 21.91 23.57 -169.99 -4.01 17.90 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.24 -5.72 5.18 56.52 0.29 -5.43 16 23 C -0.20 -4.20 7.04 -26.73 -0.19 -4.38 16 24 C -0.17 -3.35 9.95 -26.73 -0.27 -3.62 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.51 6.64 -51.93 -0.34 0.17 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.31 5.69 -51.93 -0.30 1.01 16 29 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 30 H 0.08 0.81 6.48 -51.93 -0.34 0.47 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.43 8.09 -51.92 -0.42 1.01 16 39 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.09 1.96 6.52 -51.93 -0.34 1.62 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -30.71 339.79 -8.34 -39.05 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.74 Total: 2.15 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.97 Total: -11.19 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.19 Total: -34.59 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.56 Total: -18.45 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.01 Total: 17.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.71 -8.34 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126313202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.895 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds