Wall clock time and date at job start Tue Mar 31 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46992 * 2 1 4 4 C 1.46851 * 110.99736 * 71.42312 * 3 2 1 5 5 C 1.53039 * 109.52226 * 185.83926 * 4 3 2 6 6 C 1.53116 * 109.28108 * 300.82283 * 5 4 3 7 7 C 1.53117 * 109.16094 * 57.64972 * 6 5 4 8 8 C 1.46844 * 111.00495 * 195.63232 * 3 2 1 9 9 H 1.08997 * 109.46163 * 294.17320 * 8 3 2 10 10 C 1.50704 * 109.45776 * 54.14298 * 8 3 2 11 11 O 1.20817 * 120.00155 * 28.99745 * 10 8 3 12 12 O 1.34225 * 119.99957 * 208.98944 * 10 8 3 13 13 C 1.45196 * 117.00382 * 185.09889 * 12 10 8 14 14 C 1.53005 * 109.47512 * 175.11707 * 13 12 10 15 15 C 1.50688 * 115.54903 * 304.64898 * 14 13 12 16 16 H 1.08009 * 120.00284 * 270.83497 * 15 14 13 17 17 C 1.37885 * 120.00203 * 90.56435 * 15 14 13 18 18 N 1.31514 * 120.00196 * 184.44453 * 17 15 14 19 19 Si 1.86797 * 119.99772 * 4.44125 * 17 15 14 20 20 H 1.48507 * 109.47035 * 93.89963 * 19 17 15 21 21 H 1.48496 * 109.47044 * 213.89997 * 19 17 15 22 22 H 1.48505 * 109.47105 * 333.90250 * 19 17 15 23 23 C 1.52996 * 117.51474 * 90.34862 * 14 13 12 24 24 C 1.52995 * 117.49578 * 158.97688 * 14 13 12 25 25 H 1.09001 * 109.46629 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46694 * 299.99369 * 1 2 3 27 27 H 1.08994 * 109.47596 * 59.99856 * 1 2 3 28 28 H 1.08997 * 109.47093 * 240.00776 * 2 1 3 29 29 H 1.08994 * 109.47596 * 120.00144 * 2 1 3 30 30 H 1.08999 * 109.46503 * 305.85025 * 4 3 2 31 31 H 1.08994 * 109.46213 * 65.83524 * 4 3 2 32 32 H 1.09007 * 109.50241 * 60.76348 * 5 4 3 33 33 H 1.09003 * 109.50517 * 180.83614 * 5 4 3 34 34 H 1.09001 * 109.52666 * 177.56095 * 6 5 4 35 35 H 1.09004 * 109.52232 * 297.69097 * 6 5 4 36 36 H 1.08996 * 109.50623 * 182.40326 * 7 6 5 37 37 H 1.09003 * 109.50509 * 62.29204 * 7 6 5 38 38 H 1.09009 * 109.46819 * 55.11825 * 13 12 10 39 39 H 1.08997 * 109.47097 * 295.12304 * 13 12 10 40 40 H 0.96996 * 120.00162 * 179.97438 * 18 17 15 41 41 H 1.08995 * 117.50072 * 214.97077 * 23 14 13 42 42 H 1.09006 * 117.49859 * 359.97438 * 23 14 13 43 43 H 1.08998 * 117.50451 * 359.97438 * 24 14 13 44 44 H 1.08999 * 117.49654 * 144.97872 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7833 2.0267 1.2996 5 6 2.1708 3.5050 1.2180 6 6 3.6481 3.6199 0.8322 7 6 3.8767 2.9020 -0.5007 8 6 3.4398 1.4412 -0.3694 9 1 4.0352 0.9521 0.4015 10 6 3.6446 0.7355 -1.6852 11 8 2.7506 0.6999 -2.4971 12 8 4.8202 0.1467 -1.9550 13 6 4.9866 -0.4150 -3.2836 14 6 6.4186 -0.9294 -3.4443 15 6 7.5054 0.0791 -3.1749 16 1 7.8750 0.7019 -3.9762 17 6 8.0243 0.2106 -1.9042 18 7 8.9097 1.1492 -1.6493 19 14 7.4697 -0.9442 -0.5447 20 1 8.4114 -2.0888 -0.4527 21 1 7.4506 -0.2138 0.7480 22 1 6.1063 -1.4481 -0.8488 23 6 6.6942 -2.3846 -3.0605 24 6 6.6765 -1.9721 -4.5338 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.7283 1.9417 1.5601 31 1 2.3866 1.5349 2.0625 32 1 1.5583 4.0007 0.4647 33 1 2.0092 3.9776 2.1869 34 1 3.9174 4.6712 0.7307 35 1 4.2633 3.1593 1.6052 36 1 4.9346 2.9435 -0.7597 37 1 3.2912 3.3881 -1.2811 38 1 4.7910 0.3545 -4.0305 39 1 4.2869 -1.2396 -3.4196 40 1 9.2744 1.2420 -0.7553 41 1 7.6616 -2.6126 -2.6133 42 1 5.8553 -2.9757 -2.6931 43 1 5.8261 -2.2920 -5.1358 44 1 7.6323 -1.9284 -5.0559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126313202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:39 Heat of formation + Delta-G solvation = -75.638218 kcal Electronic energy + Delta-G solvation = -23705.999717 eV Core-core repulsion = 20430.478499 eV Total energy + Delta-G solvation = -3275.521218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87820 -39.89426 -38.65683 -36.99124 -35.32833 -34.23349 -32.54844 -30.79243 -29.01816 -27.46959 -25.84765 -25.08321 -23.45287 -22.62309 -21.86205 -21.01265 -20.70393 -18.76304 -18.66233 -17.69753 -17.36727 -16.75132 -16.38553 -16.09375 -15.60907 -15.56558 -15.06331 -14.78954 -14.70240 -14.51485 -14.24051 -13.98933 -13.82127 -13.49543 -13.04602 -12.94204 -12.86801 -12.71731 -12.41814 -12.18112 -12.14456 -12.10117 -11.93273 -11.67279 -11.63411 -11.43993 -11.30880 -11.16381 -10.97098 -10.62136 -10.27059 -9.45691 -8.28185 -6.36759 1.11503 1.26584 1.39593 1.59833 1.70480 2.43329 2.73558 3.07367 3.12819 3.60483 3.69600 3.83243 3.89912 4.00202 4.05167 4.15403 4.16944 4.19621 4.33318 4.35722 4.39071 4.50974 4.52556 4.60731 4.65988 4.67312 4.79410 4.86657 4.89184 4.97761 5.01926 5.04761 5.12318 5.15072 5.16606 5.31340 5.40119 5.41078 5.56191 5.68756 5.82271 6.03227 6.25809 6.68310 6.81843 7.36308 8.86513 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.006320 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.794985 B = 4429.379953 C = 5134.064396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.038 3.962 3 N -0.526 5.526 4 C 0.052 3.948 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.108 4.108 8 C 0.099 3.901 9 H 0.065 0.935 10 C 0.455 3.545 11 O -0.520 6.520 12 O -0.346 6.346 13 C 0.116 3.884 14 C -0.038 4.038 15 C -0.491 4.491 16 H 0.033 0.967 17 C 0.039 3.961 18 N -0.944 5.944 19 Si 0.938 3.062 20 H -0.283 1.283 21 H -0.301 1.301 22 H -0.223 1.223 23 C -0.191 4.191 24 C -0.146 4.146 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.109 -0.739 8.160 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 N -0.253 5.253 4 C -0.074 4.074 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.011 4.011 9 H 0.083 0.917 10 C 0.298 3.702 11 O -0.410 6.410 12 O -0.262 6.262 13 C 0.042 3.958 14 C -0.039 4.039 15 C -0.528 4.528 16 H 0.051 0.949 17 C -0.160 4.160 18 N -0.583 5.583 19 Si 0.765 3.235 20 H -0.210 1.210 21 H -0.229 1.229 22 H -0.145 1.145 23 C -0.228 4.228 24 C -0.183 4.183 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.505 -0.453 7.656 18.200 hybrid contribution 1.063 -0.709 0.683 1.448 sum -15.442 -1.163 8.338 17.588 Atomic orbital electron populations 1.21644 0.92308 1.02321 1.02589 1.22265 0.98476 0.88084 1.00137 1.61827 1.13075 1.18299 1.32136 1.22355 1.02709 0.95193 0.87162 1.21628 0.95083 0.95101 1.03164 1.21587 0.97890 1.01142 0.94621 1.21557 1.00866 0.91204 1.00946 1.21244 0.91772 0.97391 0.90710 0.91705 1.24002 0.80187 0.75753 0.90223 1.90565 1.43644 1.57090 1.49666 1.86690 1.36521 1.66548 1.36408 1.22662 0.96611 0.96593 0.79901 1.19320 0.91738 0.89035 1.03814 1.20298 1.18254 1.19276 0.95007 0.94906 1.25679 0.93720 0.96064 1.00521 1.70042 1.31632 1.34452 1.22223 0.85917 0.81374 0.78671 0.77586 1.20955 1.22852 1.14544 1.23031 1.02021 0.98571 0.99169 1.22961 1.03014 1.01514 0.90803 0.91134 0.90928 0.92964 0.93189 0.93968 0.87879 0.94235 0.91065 0.88448 0.89610 0.91701 0.92166 0.90934 0.92641 0.91280 0.92635 0.90577 0.88101 0.87121 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.95 71.98 0.72 -1.93 16 2 C 0.04 0.99 5.32 86.30 0.46 1.45 16 3 N -0.53 -14.43 4.21 -875.52 -3.69 -18.11 16 4 C 0.05 1.04 5.30 86.33 0.46 1.49 16 5 C -0.11 -2.01 6.09 30.65 0.19 -1.82 16 6 C -0.11 -2.56 6.00 30.67 0.18 -2.38 16 7 C -0.11 -3.29 5.36 30.64 0.16 -3.13 16 8 C 0.10 3.24 2.34 44.19 0.10 3.35 16 9 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 10 C 0.46 18.17 5.82 71.24 0.41 18.58 16 11 O -0.52 -21.94 15.11 21.99 0.33 -21.60 16 12 O -0.35 -15.45 7.18 -51.37 -0.37 -15.82 16 13 C 0.12 4.97 5.36 71.98 0.39 5.35 16 14 C -0.04 -1.74 1.36 -52.93 -0.07 -1.82 16 15 C -0.49 -27.97 9.23 25.60 0.24 -27.73 16 16 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 17 C 0.04 2.24 5.45 84.66 0.46 2.70 16 18 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 19 Si 0.94 45.42 23.57 68.60 1.62 47.03 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 22 H -0.22 -9.98 5.18 99.48 0.52 -9.47 16 23 C -0.19 -7.61 7.04 30.59 0.22 -7.39 16 24 C -0.15 -5.45 9.95 30.59 0.30 -5.15 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.16 6.64 -2.39 -0.02 1.15 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.60 5.69 -2.39 -0.01 1.59 16 29 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 30 H 0.10 1.62 6.48 -2.39 -0.02 1.61 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.43 8.09 -2.38 -0.02 2.41 16 39 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.08 3.23 6.52 -2.39 -0.02 3.21 16 42 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 43 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -68.69 339.79 3.17 -65.52 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.76 Total: 19.86 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.22 Total: -18.42 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -3.39 Total: -76.56 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.04 Total: -37.42 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.62 Total: 47.03 kcal Total: -68.69 3.17 -65.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126313202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.122 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds