Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47368 * 2 1 4 4 C 1.46849 * 110.99793 * 307.95903 * 3 2 1 5 5 C 1.53037 * 109.52439 * 174.16093 * 4 3 2 6 6 C 1.53116 * 109.27923 * 59.17941 * 5 4 3 7 7 C 1.53128 * 109.15929 * 302.34474 * 6 5 4 8 8 C 1.46848 * 111.00202 * 183.75020 * 3 2 1 9 9 H 1.09000 * 109.46379 * 65.83249 * 8 3 2 10 10 C 1.50700 * 109.45738 * 305.84933 * 8 3 2 11 11 O 1.20824 * 120.00607 * 329.60911 * 10 8 3 12 12 O 1.34236 * 119.99580 * 149.60504 * 10 8 3 13 13 C 1.45197 * 117.00165 * 184.48840 * 12 10 8 14 14 C 1.52997 * 109.47148 * 175.27518 * 13 12 10 15 15 C 1.50697 * 115.55244 * 64.58860 * 14 13 12 16 16 H 1.07999 * 119.99998 * 266.47088 * 15 14 13 17 17 C 1.37880 * 120.00105 * 86.46403 * 15 14 13 18 18 N 1.31512 * 120.00200 * 178.45018 * 17 15 14 19 19 Si 1.86804 * 119.99803 * 358.45320 * 17 15 14 20 20 H 1.48498 * 109.46970 * 91.17871 * 19 17 15 21 21 H 1.48500 * 109.46869 * 211.17318 * 19 17 15 22 22 H 1.48498 * 109.47302 * 331.17384 * 19 17 15 23 23 C 1.52999 * 117.49752 * 278.91644 * 14 13 12 24 24 C 1.53003 * 117.49498 * 210.25476 * 14 13 12 25 25 H 1.08993 * 109.47045 * 300.00197 * 1 2 3 26 26 H 1.09000 * 109.47341 * 60.00086 * 1 2 3 27 27 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47145 * 239.99832 * 2 1 3 29 29 H 1.09000 * 109.47341 * 119.99914 * 2 1 3 30 30 H 1.09008 * 109.46284 * 294.17515 * 4 3 2 31 31 H 1.08999 * 109.46696 * 54.14298 * 4 3 2 32 32 H 1.09005 * 109.50315 * 179.11552 * 5 4 3 33 33 H 1.09004 * 109.49961 * 299.23496 * 5 4 3 34 34 H 1.08996 * 109.52806 * 62.24598 * 6 5 4 35 35 H 1.09000 * 109.52202 * 182.38105 * 6 5 4 36 36 H 1.08997 * 109.50246 * 297.71823 * 7 6 5 37 37 H 1.09000 * 109.50123 * 177.59516 * 7 6 5 38 38 H 1.09009 * 109.47025 * 295.27907 * 13 12 10 39 39 H 1.09000 * 109.47216 * 55.27250 * 13 12 10 40 40 H 0.97003 * 120.00262 * 180.02562 * 18 17 15 41 41 H 1.09000 * 117.49843 * 359.97438 * 23 14 13 42 42 H 1.09000 * 117.49652 * 145.02396 * 23 14 13 43 43 H 1.09002 * 117.49559 * 214.97882 * 24 14 13 44 44 H 1.08998 * 117.49954 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4001 2.1622 -1.0809 5 6 1.8200 3.6290 -0.9618 6 6 3.3456 3.7267 -1.0474 7 6 3.9670 2.8699 0.0592 8 6 3.4849 1.4251 -0.0897 9 1 3.8004 1.0350 -1.0573 10 6 4.0784 0.5820 1.0095 11 8 3.4948 0.4615 2.0605 12 8 5.2554 -0.0351 0.8207 13 6 5.7187 -0.9102 1.8826 14 6 7.0063 -1.6094 1.4420 15 6 8.1909 -0.7063 1.2136 16 1 8.3972 -0.3261 0.2240 17 6 9.0113 -0.3653 2.2680 18 7 10.0624 0.3980 2.0632 19 14 8.6296 -0.9876 3.9875 20 1 9.3314 -2.2764 4.2146 21 1 9.0891 0.0091 4.9879 22 1 7.1651 -1.1900 4.1270 23 6 6.8701 -2.8377 0.5401 24 6 7.2804 -3.0053 2.0053 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7254 1.7684 -2.0440 31 1 0.3152 2.0878 -1.0061 32 1 1.3725 4.2027 -1.7734 33 1 1.4829 4.0274 -0.0048 34 1 3.6799 3.3644 -2.0195 35 1 3.6518 4.7651 -0.9207 36 1 3.6637 3.2563 1.0322 37 1 5.0534 2.9013 -0.0230 38 1 5.9132 -0.3219 2.7794 39 1 4.9546 -1.6574 2.0971 40 1 10.6398 0.6376 2.8050 41 1 5.8631 -3.1479 0.2609 42 1 7.6375 -2.9928 -0.2183 43 1 8.3176 -3.2706 2.2102 44 1 6.5437 -3.4253 2.6900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126313458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = -59.019419 kcal Electronic energy + Delta-G solvation = -23221.216885 eV Core-core repulsion = 19946.416312 eV Total energy + Delta-G solvation = -3274.800573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47118 -38.66723 -37.00068 -35.38800 -34.42529 -32.11335 -31.55197 -29.74470 -27.43193 -25.53620 -24.83230 -24.00955 -21.74352 -21.44390 -20.67779 -19.60158 -19.14565 -17.32135 -16.83267 -16.18412 -15.84207 -15.22703 -15.03796 -14.82289 -14.75100 -14.03647 -13.74546 -13.61201 -13.45457 -13.23987 -12.76366 -12.51416 -12.30195 -12.16283 -11.86589 -11.81421 -11.38217 -11.25132 -11.15465 -11.00151 -10.84938 -10.71396 -10.57724 -10.38450 -10.23127 -9.98114 -9.84685 -9.57904 -9.04875 -8.60166 -8.59615 -8.40530 -6.12826 -4.15636 2.59827 3.00066 3.26535 3.36777 3.39746 3.81484 4.39150 4.65663 4.68408 4.80550 4.88407 4.99990 5.07602 5.12116 5.13904 5.25008 5.29043 5.36876 5.43805 5.49379 5.59886 5.64444 5.75029 5.79194 5.86246 5.93747 5.96212 5.96999 6.00905 6.07419 6.10776 6.11659 6.27300 6.29380 6.39369 6.64423 6.86561 6.89298 6.96448 7.04756 7.15984 7.67881 8.31925 8.49283 8.91776 9.49402 10.99016 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021793 B = 0.004862 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.534130 B = 5758.013553 C = 6368.955091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 N -0.519 5.519 4 C 0.053 3.947 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.109 4.109 8 C 0.099 3.901 9 H 0.072 0.928 10 C 0.457 3.543 11 O -0.504 6.504 12 O -0.332 6.332 13 C 0.109 3.891 14 C -0.005 4.005 15 C -0.480 4.480 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.261 1.261 23 C -0.173 4.173 24 C -0.190 4.190 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.265 0.735 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.982 2.482 -6.440 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 N -0.246 5.246 4 C -0.075 4.075 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.011 4.011 9 H 0.090 0.910 10 C 0.298 3.702 11 O -0.392 6.392 12 O -0.247 6.247 13 C 0.035 3.965 14 C -0.006 4.006 15 C -0.518 4.518 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.533 5.533 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.186 1.186 23 C -0.211 4.211 24 C -0.228 4.228 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.068 2.726 -5.568 18.160 hybrid contribution 0.182 -0.797 0.450 0.933 sum -16.887 1.930 -5.118 17.750 Atomic orbital electron populations 1.21846 0.94587 1.01795 1.02331 1.22266 0.96300 0.88755 1.01508 1.61762 1.03607 1.12899 1.46349 1.22227 0.99823 0.93786 0.91635 1.21638 0.96028 0.95477 1.02553 1.21571 0.95287 1.00152 0.98547 1.21577 1.01274 0.91227 1.00655 1.21174 0.88190 0.96107 0.95602 0.90998 1.23366 0.79859 0.78480 0.88461 1.90603 1.61162 1.59916 1.27508 1.86561 1.34797 1.55717 1.47587 1.23041 0.94736 0.90620 0.88060 1.19337 0.93897 0.87074 1.00330 1.20204 1.06361 1.28093 0.97113 0.90094 1.24975 0.94440 0.94349 0.98739 1.69881 1.14875 1.36366 1.32142 0.86928 0.79640 0.78611 0.84543 1.20178 1.21774 1.18551 1.22819 1.00322 1.04900 0.93013 1.23008 1.01477 1.01747 0.96518 0.91618 0.92545 0.92205 0.94985 0.89643 0.94735 0.89672 0.91390 0.90870 0.91800 0.91061 0.90280 0.89748 0.91395 0.93723 0.92494 0.90928 0.89114 0.88730 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.42 37.16 0.35 -1.13 16 2 C 0.04 0.50 5.30 -3.83 -0.02 0.48 16 3 N -0.52 -6.94 4.36 -228.07 -1.00 -7.93 16 4 C 0.05 0.54 5.04 -3.83 -0.02 0.52 16 5 C -0.12 -1.11 6.09 -26.65 -0.16 -1.27 16 6 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16 7 C -0.11 -1.48 5.36 -26.65 -0.14 -1.62 16 8 C 0.10 1.48 2.34 -68.87 -0.16 1.32 16 9 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 10 C 0.46 8.70 6.07 36.01 0.22 8.91 16 11 O -0.50 -10.59 14.99 -18.75 -0.28 -10.87 16 12 O -0.33 -7.13 10.15 -39.27 -0.40 -7.53 16 13 C 0.11 2.44 4.93 37.16 0.18 2.63 16 14 C -0.01 -0.13 1.06 -155.66 -0.16 -0.29 16 15 C -0.48 -13.35 9.35 -34.44 -0.32 -13.68 16 16 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 18 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 19 Si 0.88 21.60 24.91 -169.99 -4.23 17.36 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.26 -6.18 5.70 56.52 0.32 -5.86 16 23 C -0.17 -3.51 9.96 -26.69 -0.27 -3.78 16 24 C -0.19 -3.99 7.64 -26.69 -0.20 -4.20 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.48 6.19 -51.93 -0.32 0.16 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.09 1.32 6.15 -51.93 -0.32 1.00 16 30 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.09 0.76 5.84 -51.93 -0.30 0.45 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.63 6.56 -51.92 -0.34 1.29 16 39 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.09 2.05 7.33 -51.93 -0.38 1.67 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -30.99 342.78 -8.58 -39.56 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.64 Total: 1.82 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.97 Total: -11.36 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.22 Total: -34.15 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.68 Total: -18.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.23 Total: 17.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.99 -8.58 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126313458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.456 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds