Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47368 * 2 1 4 4 C 1.46849 * 110.99793 * 307.95903 * 3 2 1 5 5 C 1.53037 * 109.52439 * 174.16093 * 4 3 2 6 6 C 1.53116 * 109.27923 * 59.17941 * 5 4 3 7 7 C 1.53128 * 109.15929 * 302.34474 * 6 5 4 8 8 C 1.46848 * 111.00202 * 183.75020 * 3 2 1 9 9 H 1.09000 * 109.46379 * 65.83249 * 8 3 2 10 10 C 1.50700 * 109.45738 * 305.84933 * 8 3 2 11 11 O 1.20824 * 120.00607 * 329.60911 * 10 8 3 12 12 O 1.34236 * 119.99580 * 149.60504 * 10 8 3 13 13 C 1.45197 * 117.00165 * 184.48840 * 12 10 8 14 14 C 1.52997 * 109.47148 * 175.27518 * 13 12 10 15 15 C 1.50697 * 115.55244 * 64.58860 * 14 13 12 16 16 H 1.07999 * 119.99998 * 266.47088 * 15 14 13 17 17 C 1.37880 * 120.00105 * 86.46403 * 15 14 13 18 18 N 1.31512 * 120.00200 * 178.45018 * 17 15 14 19 19 Si 1.86804 * 119.99803 * 358.45320 * 17 15 14 20 20 H 1.48498 * 109.46970 * 91.17871 * 19 17 15 21 21 H 1.48500 * 109.46869 * 211.17318 * 19 17 15 22 22 H 1.48498 * 109.47302 * 331.17384 * 19 17 15 23 23 C 1.52999 * 117.49752 * 278.91644 * 14 13 12 24 24 C 1.53003 * 117.49498 * 210.25476 * 14 13 12 25 25 H 1.08993 * 109.47045 * 300.00197 * 1 2 3 26 26 H 1.09000 * 109.47341 * 60.00086 * 1 2 3 27 27 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47145 * 239.99832 * 2 1 3 29 29 H 1.09000 * 109.47341 * 119.99914 * 2 1 3 30 30 H 1.09008 * 109.46284 * 294.17515 * 4 3 2 31 31 H 1.08999 * 109.46696 * 54.14298 * 4 3 2 32 32 H 1.09005 * 109.50315 * 179.11552 * 5 4 3 33 33 H 1.09004 * 109.49961 * 299.23496 * 5 4 3 34 34 H 1.08996 * 109.52806 * 62.24598 * 6 5 4 35 35 H 1.09000 * 109.52202 * 182.38105 * 6 5 4 36 36 H 1.08997 * 109.50246 * 297.71823 * 7 6 5 37 37 H 1.09000 * 109.50123 * 177.59516 * 7 6 5 38 38 H 1.09009 * 109.47025 * 295.27907 * 13 12 10 39 39 H 1.09000 * 109.47216 * 55.27250 * 13 12 10 40 40 H 0.97003 * 120.00262 * 180.02562 * 18 17 15 41 41 H 1.09000 * 117.49843 * 359.97438 * 23 14 13 42 42 H 1.09000 * 117.49652 * 145.02396 * 23 14 13 43 43 H 1.09002 * 117.49559 * 214.97882 * 24 14 13 44 44 H 1.08998 * 117.49954 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4001 2.1622 -1.0809 5 6 1.8200 3.6290 -0.9618 6 6 3.3456 3.7267 -1.0474 7 6 3.9670 2.8699 0.0592 8 6 3.4849 1.4251 -0.0897 9 1 3.8004 1.0350 -1.0573 10 6 4.0784 0.5820 1.0095 11 8 3.4948 0.4615 2.0605 12 8 5.2554 -0.0351 0.8207 13 6 5.7187 -0.9102 1.8826 14 6 7.0063 -1.6094 1.4420 15 6 8.1909 -0.7063 1.2136 16 1 8.3972 -0.3261 0.2240 17 6 9.0113 -0.3653 2.2680 18 7 10.0624 0.3980 2.0632 19 14 8.6296 -0.9876 3.9875 20 1 9.3314 -2.2764 4.2146 21 1 9.0891 0.0091 4.9879 22 1 7.1651 -1.1900 4.1270 23 6 6.8701 -2.8377 0.5401 24 6 7.2804 -3.0053 2.0053 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7254 1.7684 -2.0440 31 1 0.3152 2.0878 -1.0061 32 1 1.3725 4.2027 -1.7734 33 1 1.4829 4.0274 -0.0048 34 1 3.6799 3.3644 -2.0195 35 1 3.6518 4.7651 -0.9207 36 1 3.6637 3.2563 1.0322 37 1 5.0534 2.9013 -0.0230 38 1 5.9132 -0.3219 2.7794 39 1 4.9546 -1.6574 2.0971 40 1 10.6398 0.6376 2.8050 41 1 5.8631 -3.1479 0.2609 42 1 7.6375 -2.9928 -0.2183 43 1 8.3176 -3.2706 2.2102 44 1 6.5437 -3.4253 2.6900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126313458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = -78.053967 kcal Electronic energy + Delta-G solvation = -23222.042285 eV Core-core repulsion = 19946.416312 eV Total energy + Delta-G solvation = -3275.625973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87512 -39.91604 -38.67080 -37.03050 -35.35714 -34.27909 -32.58444 -30.62908 -29.12874 -27.49654 -25.91295 -25.14028 -23.39578 -22.41717 -21.91185 -21.08846 -20.63969 -18.84864 -18.56122 -17.64857 -17.50141 -16.75130 -16.47459 -15.93869 -15.77684 -15.55725 -15.01507 -14.80220 -14.71471 -14.48759 -14.25724 -14.08125 -13.82506 -13.62096 -13.09438 -12.80436 -12.74540 -12.67125 -12.45318 -12.27471 -12.16828 -12.04786 -11.97121 -11.70098 -11.66509 -11.60793 -11.24740 -11.11701 -10.96054 -10.67517 -10.41225 -9.40018 -8.32670 -6.39652 1.10087 1.30265 1.34547 1.43840 1.58179 2.32136 2.75754 3.00253 3.11188 3.60388 3.73327 3.87719 3.91396 3.96015 4.09633 4.16348 4.18418 4.19132 4.27420 4.33338 4.35179 4.51444 4.54679 4.58705 4.67097 4.71072 4.78285 4.89100 4.94048 4.96877 5.04758 5.08014 5.14605 5.15896 5.19390 5.29793 5.41238 5.44265 5.54172 5.63167 5.84780 6.06389 6.27505 6.67128 6.78344 7.29000 8.83021 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021793 B = 0.004862 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.534130 B = 5758.013553 C = 6368.955091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 N -0.531 5.531 4 C 0.050 3.950 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.110 4.110 8 C 0.104 3.896 9 H 0.079 0.921 10 C 0.454 3.546 11 O -0.526 6.526 12 O -0.349 6.349 13 C 0.115 3.885 14 C -0.040 4.040 15 C -0.480 4.480 16 H 0.035 0.965 17 C 0.024 3.976 18 N -0.945 5.945 19 Si 0.931 3.069 20 H -0.257 1.257 21 H -0.296 1.296 22 H -0.244 1.244 23 C -0.154 4.154 24 C -0.178 4.178 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.267 0.733 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.621 1.702 -6.906 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 N -0.259 5.259 4 C -0.077 4.077 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.005 4.005 9 H 0.097 0.903 10 C 0.297 3.703 11 O -0.415 6.415 12 O -0.265 6.265 13 C 0.041 3.959 14 C -0.041 4.041 15 C -0.518 4.518 16 H 0.053 0.947 17 C -0.174 4.174 18 N -0.584 5.584 19 Si 0.756 3.244 20 H -0.182 1.182 21 H -0.223 1.223 22 H -0.168 1.168 23 C -0.191 4.191 24 C -0.215 4.215 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.733 1.934 -6.055 20.731 hybrid contribution 0.994 -0.511 0.495 1.222 sum -18.739 1.423 -5.560 19.598 Atomic orbital electron populations 1.21800 0.92185 1.02813 1.02926 1.22265 0.98267 0.88390 1.00135 1.61798 1.02281 1.13561 1.48256 1.22403 1.00619 0.93726 0.90907 1.21651 0.95046 0.95242 1.03346 1.21577 0.96043 1.00052 0.97338 1.21597 1.00552 0.91095 1.01535 1.21244 0.89490 0.95794 0.94005 0.90292 1.24241 0.78781 0.77949 0.89286 1.90577 1.61469 1.60702 1.28780 1.86577 1.36227 1.56173 1.47481 1.22808 0.94838 0.90829 0.87427 1.19235 0.92831 0.87719 1.04319 1.20316 1.07933 1.28434 0.95107 0.94708 1.25778 0.94161 0.94592 1.02876 1.70022 1.16443 1.38505 1.33447 0.86005 0.80532 0.78594 0.79289 1.18209 1.22285 1.16769 1.22871 1.01875 1.01586 0.92727 1.23079 1.02028 0.98848 0.97551 0.92372 0.90477 0.91061 0.94526 0.92841 0.93757 0.87835 0.88475 0.91600 0.90917 0.89755 0.91644 0.91398 0.93639 0.91550 0.92440 0.87908 0.89559 0.89516 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.42 71.98 0.68 -1.78 16 2 C 0.04 0.90 5.30 86.30 0.46 1.36 16 3 N -0.53 -13.48 4.36 -875.48 -3.82 -17.30 16 4 C 0.05 0.87 5.04 86.33 0.44 1.30 16 5 C -0.12 -1.80 6.09 30.65 0.19 -1.62 16 6 C -0.11 -2.09 6.00 30.68 0.18 -1.91 16 7 C -0.11 -2.96 5.36 30.65 0.16 -2.80 16 8 C 0.10 3.08 2.34 44.19 0.10 3.19 16 9 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 10 C 0.45 17.51 6.07 71.24 0.43 17.94 16 11 O -0.53 -22.39 14.99 21.97 0.33 -22.06 16 12 O -0.35 -15.24 10.15 -51.48 -0.52 -15.76 16 13 C 0.11 5.09 4.93 71.98 0.35 5.45 16 14 C -0.04 -1.86 1.06 -52.93 -0.06 -1.92 16 15 C -0.48 -27.54 9.35 25.60 0.24 -27.30 16 16 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 17 C 0.02 1.38 5.47 84.66 0.46 1.85 16 18 N -0.94 -59.09 13.96 21.45 0.30 -58.80 16 19 Si 0.93 44.59 24.91 68.60 1.71 46.30 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 22 H -0.24 -10.94 5.70 99.48 0.57 -10.38 16 23 C -0.15 -5.92 9.96 30.62 0.30 -5.62 16 24 C -0.18 -7.01 7.64 30.62 0.23 -6.78 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.03 6.19 -2.39 -0.01 1.02 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 1.64 6.15 -2.39 -0.01 1.63 16 30 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 1.45 5.84 -2.39 -0.01 1.44 16 32 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 2.18 6.56 -2.38 -0.02 2.17 16 39 H 0.07 2.62 8.04 -2.39 -0.02 2.61 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.09 3.56 7.33 -2.39 -0.02 3.54 16 44 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -69.87 342.78 3.00 -66.87 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.82 Total: 19.38 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.18 Total: -18.63 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -3.52 Total: -76.10 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.19 Total: -37.82 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.71 Total: 46.30 kcal Total: -69.87 3.00 -66.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126313458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.180 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds