Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20761 * 119.99615 * 2 1 4 4 C 1.50699 * 120.00648 * 180.02562 * 2 1 3 5 5 H 1.09005 * 112.84686 * 311.21217 * 4 2 1 6 6 C 1.53782 * 113.69194 * 179.97438 * 4 2 1 7 7 C 1.53778 * 87.08159 * 270.87216 * 6 4 2 8 8 H 1.09007 * 113.68555 * 220.01033 * 7 6 4 9 9 C 1.50700 * 113.61446 * 89.11922 * 7 6 4 10 10 O 1.21280 * 119.99985 * 265.69291 * 9 7 6 11 11 N 1.34773 * 119.99815 * 85.68857 * 9 7 6 12 12 C 1.46496 * 120.00214 * 0.02562 * 11 9 7 13 13 C 1.46498 * 119.99807 * 179.97438 * 11 9 7 14 14 H 1.09002 * 109.47347 * 0.02562 * 13 11 9 15 15 C 1.52994 * 109.47600 * 240.00473 * 13 11 9 16 16 C 1.50695 * 109.46987 * 120.00179 * 13 11 9 17 17 H 1.07997 * 120.00352 * 0.02562 * 16 13 11 18 18 C 1.37877 * 120.00420 * 179.97438 * 16 13 11 19 19 N 1.31522 * 119.99723 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00538 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47221 * 89.99909 * 20 18 16 22 22 H 1.48499 * 109.47493 * 210.00402 * 20 18 16 23 23 H 1.48507 * 109.47042 * 330.00257 * 20 18 16 24 24 C 1.53778 * 113.61532 * 82.40324 * 4 2 1 25 25 C 1.53002 * 113.61508 * 334.65863 * 24 4 2 26 26 C 1.52997 * 113.61846 * 203.75192 * 24 4 2 27 27 H 1.09003 * 109.47116 * 239.99163 * 1 2 3 28 28 H 1.08994 * 109.47615 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47264 * 119.99968 * 1 2 3 30 30 H 1.09000 * 113.60939 * 156.32049 * 6 4 2 31 31 H 1.08998 * 113.61608 * 25.42802 * 6 4 2 32 32 H 1.09002 * 109.47026 * 269.99200 * 12 11 9 33 33 H 1.08998 * 109.47208 * 29.99543 * 12 11 9 34 34 H 1.09001 * 109.47282 * 149.99940 * 12 11 9 35 35 H 1.09002 * 109.46863 * 300.00410 * 15 13 11 36 36 H 1.09001 * 109.47464 * 59.99817 * 15 13 11 37 37 H 1.09000 * 109.47647 * 180.02562 * 15 13 11 38 38 H 0.96996 * 120.00223 * 179.97438 * 19 18 16 39 39 H 1.09009 * 109.46975 * 147.17290 * 25 24 4 40 40 H 1.08998 * 109.46969 * 267.16770 * 25 24 4 41 41 H 1.08996 * 109.47315 * 27.17724 * 25 24 4 42 42 H 1.09004 * 109.46877 * 322.50897 * 26 24 4 43 43 H 1.08996 * 109.47111 * 82.50322 * 26 24 4 44 44 H 1.09000 * 109.47614 * 202.50922 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 1 1.8991 -2.0028 0.7548 6 6 3.7891 -1.1359 -0.0011 7 6 3.7081 -1.1209 -1.5367 8 1 4.5145 -1.6699 -2.0231 9 6 3.5034 0.2547 -2.1171 10 8 2.3836 0.6458 -2.3698 11 7 4.5648 1.0504 -2.3551 12 6 5.9175 0.5779 -2.0502 13 6 4.3659 2.3875 -2.9198 14 1 3.3014 2.5602 -3.0785 15 6 5.1046 2.4922 -4.2554 16 6 4.9051 3.4213 -1.9650 17 1 5.3517 3.1132 -1.0313 18 6 4.8293 4.7605 -2.2840 19 7 4.2858 5.1358 -3.4214 20 14 5.4983 6.0419 -1.1010 21 1 6.9268 6.3038 -1.4109 22 1 4.7222 7.2999 -1.2430 23 1 5.3778 5.5406 0.2917 24 6 2.4074 -1.9310 -1.3975 25 6 1.3121 -1.5060 -2.3777 26 6 2.6280 -3.4447 -1.3708 27 1 -0.3633 -0.5140 0.8899 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 4.3237 -1.9971 0.3996 31 1 4.1240 -0.1915 0.4278 32 1 6.1749 0.8489 -1.0262 33 1 5.9573 -0.5058 -2.1602 34 1 6.6270 1.0392 -2.7372 35 1 6.1691 2.3196 -4.0963 36 1 4.7146 1.7445 -4.9460 37 1 4.9570 3.4872 -4.6753 38 1 4.2321 6.0779 -3.6457 39 1 1.7243 -1.4611 -3.3859 40 1 0.4985 -2.2307 -2.3499 41 1 0.9336 -0.5235 -2.0959 42 1 3.2653 -3.7041 -0.5253 43 1 1.6675 -3.9502 -1.2702 44 1 3.1084 -3.7584 -2.2975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152902534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -38.580509 kcal Electronic energy + Delta-G solvation = -24414.586693 eV Core-core repulsion = 21140.672418 eV Total energy + Delta-G solvation = -3273.914275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32055 -38.19256 -37.06740 -35.08429 -32.77405 -30.94629 -30.17684 -29.34359 -27.18363 -26.35926 -25.88998 -25.07966 -22.97653 -21.43835 -20.00836 -18.41114 -17.21012 -16.76185 -16.14134 -15.66245 -15.35835 -14.97887 -14.69870 -14.20513 -14.04445 -13.78768 -13.48768 -13.10139 -12.89691 -12.49165 -12.32190 -12.20388 -12.11277 -11.96456 -11.57754 -11.51995 -11.43717 -11.19940 -11.09864 -10.95763 -10.85088 -10.69043 -10.47810 -10.16102 -10.05206 -9.96235 -9.88545 -9.07434 -9.03173 -8.49200 -8.26750 -7.40076 -5.95495 -4.01148 2.52982 3.33574 3.40206 3.44517 3.54196 4.00520 4.30333 4.48253 4.56652 4.65993 4.90931 5.04625 5.27040 5.34630 5.40030 5.44139 5.51149 5.62168 5.68250 5.71761 5.73666 5.77926 5.90812 5.94262 6.00706 6.16591 6.17913 6.22032 6.25965 6.35397 6.41578 6.53461 6.83083 6.87567 6.91173 7.16227 7.58073 7.66901 7.85442 8.13322 8.15181 8.34390 8.71018 8.98359 9.27152 9.64441 11.10103 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.006021 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.349878 B = 4649.121772 C = 5027.711778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.368 3.632 3 O -0.418 6.418 4 C -0.158 4.158 5 H 0.097 0.903 6 C -0.113 4.113 7 C -0.133 4.133 8 H 0.093 0.907 9 C 0.530 3.470 10 O -0.544 6.544 11 N -0.587 5.587 12 C 0.088 3.912 13 C 0.262 3.738 14 H 0.063 0.937 15 C -0.147 4.147 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.047 4.047 25 C -0.147 4.147 26 C -0.125 4.125 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.009 0.991 37 H 0.093 0.907 38 H 0.261 0.739 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -17.069 5.117 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.240 3.760 3 O -0.288 6.288 4 C -0.177 4.177 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.155 4.155 8 H 0.111 0.889 9 C 0.317 3.683 10 O -0.423 6.423 11 N -0.318 5.318 12 C -0.056 4.056 13 C 0.162 3.838 14 H 0.081 0.919 15 C -0.206 4.206 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.724 3.276 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.048 4.048 25 C -0.203 4.203 26 C -0.183 4.183 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.028 0.972 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.852 -16.075 4.865 17.036 hybrid contribution 0.584 0.560 0.628 1.025 sum -2.267 -15.515 5.492 16.614 Atomic orbital electron populations 1.22372 0.94983 1.04610 1.03621 1.23649 0.91461 0.89211 0.71684 1.90549 1.71268 1.34164 1.32785 1.23086 0.97168 0.98002 0.99456 0.88446 1.22718 0.94777 1.03245 0.94350 1.22700 0.99170 0.95883 0.97714 0.88888 1.19572 0.85043 0.85408 0.78260 1.90542 1.22917 1.74847 1.54028 1.48083 1.04929 1.17334 1.61412 1.21530 0.85616 0.97510 1.00929 1.18856 0.98429 0.76218 0.90314 0.91940 1.22107 0.98133 1.02362 0.97967 1.21307 1.39125 0.90770 1.03992 0.92460 1.24872 0.95326 0.98332 0.95381 1.69882 1.44657 1.16245 1.22314 0.86522 0.78623 0.80946 0.81466 1.20765 1.21200 1.19979 1.21532 0.95243 0.94341 0.93683 1.22245 0.96600 1.02692 0.98776 1.21618 1.01811 0.92843 1.01984 0.90264 0.90275 0.88885 0.89212 0.89784 0.93523 0.93168 0.91184 0.95260 0.97169 0.88870 0.92912 0.92704 0.94278 0.88270 0.92368 0.92038 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 9.81 36.00 0.35 -2.29 16 2 C 0.37 6.20 4.12 -29.04 -0.12 6.08 16 3 O -0.42 -9.37 13.87 -16.99 -0.24 -9.60 16 4 C -0.16 -2.12 3.76 -90.96 -0.34 -2.46 16 5 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 6 C -0.11 -1.57 6.83 -25.92 -0.18 -1.75 16 7 C -0.13 -2.06 2.76 -90.91 -0.25 -2.31 16 8 H 0.09 1.26 6.74 -51.93 -0.35 0.91 16 9 C 0.53 11.18 5.40 -10.99 -0.06 11.12 16 10 O -0.54 -12.96 9.56 -17.43 -0.17 -13.12 16 11 N -0.59 -13.17 2.75 -175.27 -0.48 -13.66 16 12 C 0.09 1.59 9.51 59.84 0.57 2.16 16 13 C 0.26 7.01 2.64 -69.09 -0.18 6.83 16 14 H 0.06 1.95 6.90 -51.93 -0.36 1.59 16 15 C -0.15 -3.67 8.95 37.15 0.33 -3.34 16 16 C -0.51 -14.67 8.37 -34.44 -0.29 -14.96 16 17 H 0.06 1.65 7.65 -52.49 -0.40 1.24 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.89 -26.31 11.32 55.43 0.63 -25.69 16 20 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 24 C -0.05 -0.62 1.33 -153.65 -0.20 -0.82 16 25 C -0.15 -2.15 6.75 37.16 0.25 -1.90 16 26 C -0.13 -1.19 9.05 37.16 0.34 -0.85 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 29 H 0.09 1.14 6.03 -51.93 -0.31 0.83 16 30 H 0.09 0.94 7.65 -51.93 -0.40 0.54 16 31 H 0.08 1.42 7.39 -51.93 -0.38 1.04 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.72 6.14 -51.93 -0.32 0.40 16 34 H 0.07 1.27 6.42 -51.93 -0.33 0.93 16 35 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.88 7.97 -51.92 -0.41 0.47 16 40 H 0.04 0.46 8.00 -51.93 -0.42 0.05 16 41 H 0.10 1.72 2.89 -51.93 -0.15 1.57 16 42 H 0.06 0.48 7.34 -51.93 -0.38 0.10 16 43 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -33.73 331.95 -7.12 -40.84 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.96 Total: 1.84 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.12 Total: -2.80 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.14 Total: -39.34 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.40 Total: -22.73 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.73 -7.12 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152902534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.261 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds