Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47289 * 2 1 4 4 C 1.42900 * 114.00422 * 179.97438 * 3 2 1 5 5 H 1.09008 * 112.85580 * 21.74585 * 4 3 2 6 6 C 1.53845 * 113.63360 * 250.49989 * 4 3 2 7 7 C 1.53850 * 87.14224 * 220.22795 * 6 4 3 8 8 H 1.08991 * 113.63843 * 270.54156 * 7 6 4 9 9 N 1.46509 * 113.62881 * 139.66978 * 7 6 4 10 10 C 1.34776 * 119.99821 * 147.47175 * 9 7 6 11 11 O 1.21686 * 119.99868 * 0.02562 * 10 9 7 12 12 C 1.46370 * 119.99919 * 179.97438 * 10 9 7 13 13 H 1.08003 * 120.00263 * 6.26847 * 12 10 9 14 14 C 1.40050 * 120.00258 * 186.26049 * 12 10 9 15 15 N 1.30671 * 120.00120 * 175.04215 * 14 12 10 16 16 Si 1.86796 * 119.99605 * 355.03668 * 14 12 10 17 17 H 1.48502 * 109.47312 * 60.00316 * 16 14 12 18 18 H 1.48505 * 109.47427 * 300.00009 * 16 14 12 19 19 H 1.48503 * 109.47222 * 179.97438 * 16 14 12 20 20 C 1.53383 * 113.71427 * 153.06351 * 4 3 2 21 21 C 1.52722 * 113.56540 * 254.34835 * 20 4 3 22 22 C 1.53142 * 109.23824 * 187.47188 * 21 20 4 23 23 C 1.52975 * 109.43063 * 302.16740 * 22 21 20 24 24 C 1.52978 * 109.70354 * 61.68561 * 23 22 21 25 25 C 1.52724 * 113.55240 * 25.17804 * 20 4 3 26 26 H 1.08993 * 109.47327 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47214 * 300.00340 * 1 2 3 28 28 H 1.08997 * 109.47001 * 59.99683 * 1 2 3 29 29 H 1.09003 * 109.47466 * 239.99718 * 2 1 3 30 30 H 1.08997 * 109.47001 * 120.00316 * 2 1 3 31 31 H 1.09006 * 113.60618 * 105.67001 * 6 4 3 32 32 H 1.08993 * 113.60870 * 334.79643 * 6 4 3 33 33 H 0.97002 * 119.99745 * 327.47731 * 9 7 6 34 34 H 0.97001 * 120.00021 * 5.07541 * 15 14 12 35 35 H 1.08998 * 109.50885 * 307.39970 * 21 20 4 36 36 H 1.08996 * 109.50869 * 67.54199 * 21 20 4 37 37 H 1.08998 * 109.47900 * 182.17815 * 22 21 20 38 38 H 1.09001 * 109.47576 * 62.14981 * 22 21 20 39 39 H 1.09001 * 109.43038 * 301.61445 * 23 22 21 40 40 H 1.09001 * 109.43081 * 181.75400 * 23 22 21 41 41 H 1.08995 * 109.47413 * 178.32479 * 24 23 22 42 42 H 1.08997 * 109.48233 * 58.30175 * 24 23 22 43 43 H 1.09009 * 109.51113 * 292.44852 * 25 20 4 44 44 H 1.08997 * 109.51514 * 52.54001 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9268 0.5634 -0.3712 6 6 4.0080 1.9780 1.3293 7 6 4.9894 2.8130 0.4888 8 1 5.9168 2.2911 0.2533 9 7 5.2132 4.1619 1.0152 10 6 6.4138 4.7546 0.8613 11 8 7.3117 4.1697 0.2847 12 6 6.6372 6.1024 1.3867 13 1 5.8764 6.5820 1.9846 14 6 7.8378 6.7701 1.1143 15 7 7.9990 8.0081 1.5002 16 14 9.2086 5.8909 0.1993 17 1 8.7204 5.4703 -1.1386 18 1 9.6307 4.6943 0.9709 19 1 10.3644 6.8092 0.0377 20 6 3.9472 2.7568 -0.6356 21 6 4.5568 2.5564 -2.0214 22 6 5.2036 3.8658 -2.4823 23 6 4.1525 4.9772 -2.4910 24 6 3.6139 5.1889 -1.0749 25 6 2.9389 3.9029 -0.5891 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.4925 1.2048 1.9257 32 1 3.3051 2.5798 1.9054 33 1 4.4973 4.6282 1.4745 34 1 7.3181 8.4408 2.0387 35 1 5.3132 1.7729 -1.9765 36 1 3.7753 2.2691 -2.7248 37 1 5.6062 3.7384 -3.4871 38 1 6.0096 4.1333 -1.7989 39 1 3.3330 4.6960 -3.1524 40 1 4.6054 5.9019 -2.8487 41 1 2.8873 6.0013 -1.0802 42 1 4.4372 5.4418 -0.4069 43 1 2.0925 3.6696 -1.2352 44 1 2.5890 4.0388 0.4342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153892084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -100.871979 kcal Electronic energy + Delta-G solvation = -24024.400448 eV Core-core repulsion = 20747.785012 eV Total energy + Delta-G solvation = -3276.615436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74165 -37.70820 -36.88189 -34.95662 -32.87948 -32.27166 -30.92667 -30.25741 -28.24387 -26.39482 -23.62482 -23.00192 -22.73199 -21.98289 -20.05753 -19.75225 -18.47612 -17.68022 -16.73742 -15.81421 -15.65051 -15.23711 -14.66168 -14.28413 -13.98988 -13.60053 -13.48888 -13.39382 -13.04105 -12.76090 -12.59937 -12.54061 -12.42942 -12.07470 -12.03067 -11.70592 -11.46778 -11.30355 -10.95601 -10.73054 -10.64622 -10.48652 -10.32851 -10.21479 -9.90846 -9.83685 -9.63972 -9.22748 -9.06253 -8.92018 -7.93158 -7.71915 -6.96791 -4.91243 3.61004 3.65367 3.71695 4.10113 4.32312 4.50647 4.64086 4.72542 4.77167 4.91173 4.94311 5.08812 5.11311 5.24050 5.31940 5.35342 5.49567 5.56053 5.61147 5.71108 5.74199 5.76501 5.78002 5.92721 5.95557 5.97564 6.02365 6.05022 6.11957 6.29818 6.34006 6.46915 6.48906 6.68320 6.71292 6.76057 6.87570 7.10049 7.33380 7.52502 7.72730 7.78325 8.12789 8.85826 9.09400 10.07912 10.35202 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.005329 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.389060 B = 5252.770001 C = 5481.573439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.071 3.929 5 H 0.084 0.916 6 C -0.168 4.168 7 C 0.147 3.853 8 H 0.111 0.889 9 N -0.733 5.733 10 C 0.555 3.445 11 O -0.616 6.616 12 C -0.598 4.598 13 H 0.069 0.931 14 C 0.060 3.940 15 N -0.834 5.834 16 Si 1.134 2.866 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.327 1.327 20 C -0.085 4.085 21 C -0.095 4.095 22 C -0.125 4.125 23 C -0.110 4.110 24 C -0.137 4.137 25 C -0.071 4.071 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.389 0.611 34 H 0.277 0.723 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 -12.702 -4.046 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.012 3.988 5 H 0.102 0.898 6 C -0.207 4.207 7 C 0.039 3.961 8 H 0.129 0.871 9 N -0.382 5.382 10 C 0.364 3.636 11 O -0.510 6.510 12 C -0.634 4.634 13 H 0.087 0.913 14 C -0.157 4.157 15 N -0.462 5.462 16 Si 0.968 3.032 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.259 1.259 20 C -0.087 4.087 21 C -0.132 4.132 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.174 4.174 25 C -0.108 4.108 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.222 0.778 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.917 -12.671 -5.012 17.460 hybrid contribution -2.070 -0.245 1.053 2.335 sum -12.988 -12.916 -3.960 18.740 Atomic orbital electron populations 1.21729 0.94119 1.01875 1.03032 1.22453 0.95317 0.84696 0.99696 1.87956 1.20787 1.25347 1.94594 1.23559 0.80595 0.97741 0.96885 0.89844 1.23942 0.99223 1.00254 0.97290 1.21833 0.96288 0.85723 0.92209 0.87119 1.45672 1.15086 1.15495 1.61987 1.18370 0.80028 0.86690 0.78562 1.90071 1.42698 1.66746 1.51472 1.22046 1.05046 0.99935 1.36371 0.91306 1.27137 1.00169 0.94034 0.94362 1.70661 1.37360 1.10714 1.27437 0.82281 0.71767 0.71901 0.77263 1.21350 1.21715 1.25894 1.22467 0.96460 0.94021 0.95779 1.21373 0.98813 0.97891 0.95166 1.21580 0.99184 0.94412 1.01050 1.21389 0.97890 0.98452 0.96993 1.21875 1.01466 0.96373 0.97719 1.20898 0.96102 0.93134 1.00687 0.91476 0.91950 0.91974 0.93721 0.93701 0.91410 0.89297 0.77790 0.91247 0.92370 0.92778 0.93061 0.89592 0.93380 0.92635 0.93212 0.88647 0.92415 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.56 6.51 37.16 0.24 0.80 16 3 O -0.37 -4.84 9.50 -35.23 -0.33 -5.17 16 4 C 0.07 0.94 3.73 -26.09 -0.10 0.84 16 5 H 0.08 1.01 7.85 -51.92 -0.41 0.60 16 6 C -0.17 -2.40 7.34 -25.85 -0.19 -2.58 16 7 C 0.15 2.54 3.50 -67.27 -0.24 2.31 16 8 H 0.11 2.13 7.23 -51.93 -0.38 1.75 16 9 N -0.73 -14.76 2.99 -54.58 -0.16 -14.92 16 10 C 0.55 13.99 6.31 -12.99 -0.08 13.90 16 11 O -0.62 -16.79 10.64 5.20 0.06 -16.74 16 12 C -0.60 -16.41 9.96 -35.63 -0.35 -16.77 16 13 H 0.07 1.88 8.05 -52.48 -0.42 1.46 16 14 C 0.06 1.72 5.52 -17.37 -0.10 1.63 16 15 N -0.83 -23.99 13.64 55.55 0.76 -23.23 16 16 Si 1.13 29.88 25.82 -169.99 -4.39 25.49 16 17 H -0.29 -7.62 6.98 56.52 0.39 -7.23 16 18 H -0.29 -7.75 7.10 56.52 0.40 -7.34 16 19 H -0.33 -8.39 7.11 56.52 0.40 -7.98 16 20 C -0.09 -1.30 0.74 -154.38 -0.11 -1.41 16 21 C -0.09 -1.44 5.09 -26.80 -0.14 -1.58 16 22 C -0.12 -2.16 5.85 -26.67 -0.16 -2.31 16 23 C -0.11 -1.80 5.86 -26.76 -0.16 -1.96 16 24 C -0.14 -2.31 5.70 -26.67 -0.15 -2.46 16 25 C -0.07 -1.08 3.89 -26.80 -0.10 -1.19 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.27 7.61 -51.93 -0.40 0.88 16 33 H 0.39 7.29 7.78 -40.82 -0.32 6.97 16 34 H 0.28 7.66 8.72 -40.82 -0.36 7.30 16 35 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.84 6.55 -51.93 -0.34 1.50 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.91 4.76 -51.93 -0.25 1.66 16 43 H 0.06 0.87 8.08 -51.92 -0.42 0.45 16 44 H 0.06 0.88 6.94 -51.93 -0.36 0.52 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -29.84 335.29 -7.79 -37.63 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.51 Total: 3.57 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.25 Total: -11.68 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.60 Total: -38.15 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.28 Total: -21.91 kcal Atomic # 14 Polarization: 29.88 SS G_CDS: -4.39 Total: 25.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.84 -7.79 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153892084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.241 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds