Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46771 * 2 1 4 4 C 1.42908 * 113.99929 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.86008 * 341.23950 * 4 3 2 6 6 C 1.54026 * 113.68683 * 112.54023 * 4 3 2 7 7 C 1.53856 * 87.07898 * 139.62881 * 6 4 3 8 8 H 1.08992 * 113.63110 * 89.48684 * 7 6 4 9 9 N 1.46499 * 113.63192 * 220.36199 * 7 6 4 10 10 C 1.34777 * 120.00024 * 220.16386 * 9 7 6 11 11 O 1.21696 * 119.99714 * 359.97438 * 10 9 7 12 12 C 1.46369 * 120.00339 * 179.97438 * 10 9 7 13 13 H 1.08001 * 119.99666 * 6.10497 * 12 10 9 14 14 C 1.40051 * 120.00172 * 186.11283 * 12 10 9 15 15 N 1.30672 * 119.99895 * 184.30809 * 14 12 10 16 16 Si 1.86797 * 119.99981 * 4.57665 * 14 12 10 17 17 H 1.48505 * 109.47141 * 179.72875 * 16 14 12 18 18 H 1.48503 * 109.47198 * 299.72702 * 16 14 12 19 19 H 1.48497 * 109.47209 * 59.72846 * 16 14 12 20 20 C 1.53386 * 113.63050 * 209.99961 * 4 3 2 21 21 C 1.52730 * 113.55182 * 334.84070 * 20 4 3 22 22 C 1.53147 * 109.23382 * 187.46354 * 21 20 4 23 23 C 1.52970 * 109.43850 * 302.17677 * 22 21 20 24 24 C 1.52970 * 109.69851 * 61.68754 * 23 22 21 25 25 C 1.52721 * 113.56069 * 105.66770 * 20 4 3 26 26 H 1.09000 * 109.47346 * 60.00629 * 1 2 3 27 27 H 1.09005 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47635 * 300.00097 * 1 2 3 29 29 H 1.08994 * 109.47635 * 239.99903 * 2 1 3 30 30 H 1.08999 * 109.46861 * 119.99159 * 2 1 3 31 31 H 1.08994 * 113.60270 * 25.09609 * 6 4 3 32 32 H 1.08996 * 113.65941 * 254.17005 * 6 4 3 33 33 H 0.97003 * 120.00233 * 40.15636 * 9 7 6 34 34 H 0.96998 * 120.00026 * 355.20072 * 15 14 12 35 35 H 1.08997 * 109.50832 * 307.38935 * 21 20 4 36 36 H 1.08994 * 109.50780 * 67.53940 * 21 20 4 37 37 H 1.09000 * 109.47274 * 182.18162 * 22 21 20 38 38 H 1.09008 * 109.47264 * 62.16764 * 22 21 20 39 39 H 1.08993 * 109.43014 * 301.61437 * 23 22 21 40 40 H 1.08998 * 109.39299 * 181.72988 * 23 22 21 41 41 H 1.09004 * 109.47866 * 178.32156 * 24 23 22 42 42 H 1.08998 * 109.48540 * 58.29146 * 24 23 22 43 43 H 1.08998 * 109.51363 * 292.45440 * 25 20 4 44 44 H 1.08997 * 109.51386 * 52.55221 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9282 0.5456 0.3221 6 6 4.0044 2.0483 -1.3035 7 6 4.9858 2.8396 -0.4216 8 1 5.9147 2.3078 -0.2159 9 7 5.2060 4.2149 -0.8760 10 6 6.4429 4.7485 -0.8344 11 8 7.3768 4.0880 -0.4190 12 6 6.6630 6.1223 -1.2889 13 1 5.8218 6.7412 -1.5643 14 6 7.9643 6.6342 -1.3668 15 7 8.1558 7.8854 -1.6913 16 14 9.4263 5.5264 -1.0141 17 1 10.6835 6.3014 -1.1695 18 1 9.3321 5.0095 0.3749 19 1 9.4258 4.3876 -1.9671 20 6 3.9479 2.7219 0.7020 21 6 2.9379 3.8674 0.7206 22 6 3.6131 5.1264 1.2723 23 6 4.1573 4.8400 2.6729 24 6 5.2099 3.7324 2.6006 25 6 4.5630 2.4485 2.0729 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.2992 2.6784 -1.8454 32 1 4.4892 1.3089 -1.9409 33 1 4.4615 4.7414 -1.2069 34 1 7.4027 8.4412 -1.9458 35 1 2.5849 4.0579 -0.2928 36 1 2.0943 3.5985 1.3563 37 1 2.8853 5.9362 1.3236 38 1 4.4336 5.4161 0.6157 39 1 3.3408 4.5226 3.3213 40 1 4.6105 5.7452 3.0772 41 1 5.6167 3.5520 3.5957 42 1 6.0129 4.0372 1.9294 43 1 3.7846 2.1230 2.7629 44 1 5.3196 1.6690 1.9836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153892398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -100.596437 kcal Electronic energy + Delta-G solvation = -23915.729825 eV Core-core repulsion = 20639.126338 eV Total energy + Delta-G solvation = -3276.603488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74574 -37.68876 -36.93060 -34.96649 -32.87629 -32.27394 -30.94404 -30.30956 -28.28042 -26.39088 -23.61782 -23.03867 -22.73509 -22.03607 -20.12128 -19.72280 -18.55980 -17.63920 -16.73386 -15.84366 -15.65455 -15.24341 -14.64036 -14.32480 -14.00830 -13.58437 -13.51873 -13.41239 -13.05518 -12.88372 -12.57967 -12.53522 -12.40137 -12.10542 -12.04404 -11.76463 -11.46347 -11.31822 -11.00133 -10.75537 -10.62508 -10.56181 -10.37786 -10.20756 -9.96760 -9.90277 -9.69279 -9.19412 -9.07223 -8.94998 -7.91019 -7.72454 -6.96602 -4.90782 3.59491 3.65110 3.71223 4.09467 4.32356 4.51548 4.61970 4.71978 4.76378 4.89846 4.93821 5.08440 5.10792 5.23165 5.28234 5.31961 5.48034 5.51496 5.60473 5.68386 5.70852 5.73714 5.76253 5.88390 5.91489 5.94778 5.98595 6.06598 6.08315 6.24156 6.29711 6.42845 6.45990 6.61505 6.65625 6.70947 6.76071 7.00231 7.32919 7.53361 7.73037 7.78781 8.13207 8.86179 9.09996 10.08785 10.35446 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.005263 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.466091 B = 5319.051495 C = 5631.119789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.071 3.929 5 H 0.084 0.916 6 C -0.168 4.168 7 C 0.146 3.854 8 H 0.113 0.887 9 N -0.733 5.733 10 C 0.554 3.446 11 O -0.618 6.618 12 C -0.598 4.598 13 H 0.069 0.931 14 C 0.061 3.939 15 N -0.835 5.835 16 Si 1.131 2.869 17 H -0.325 1.325 18 H -0.281 1.281 19 H -0.292 1.292 20 C -0.087 4.087 21 C -0.073 4.073 22 C -0.137 4.137 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.096 4.096 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.389 0.611 34 H 0.277 0.723 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 -12.477 4.820 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.012 3.988 5 H 0.102 0.898 6 C -0.207 4.207 7 C 0.038 3.962 8 H 0.131 0.869 9 N -0.382 5.382 10 C 0.362 3.638 11 O -0.512 6.512 12 C -0.634 4.634 13 H 0.087 0.913 14 C -0.157 4.157 15 N -0.462 5.462 16 Si 0.964 3.036 17 H -0.257 1.257 18 H -0.208 1.208 19 H -0.220 1.220 20 C -0.089 4.089 21 C -0.110 4.110 22 C -0.174 4.174 23 C -0.147 4.147 24 C -0.158 4.158 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.223 0.777 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.176 -12.703 5.206 17.702 hybrid contribution -2.254 0.062 -0.389 2.288 sum -13.431 -12.641 4.818 19.063 Atomic orbital electron populations 1.21731 0.94118 1.01882 1.03025 1.22459 0.95323 0.84680 0.99704 1.87956 1.20796 1.25369 1.94582 1.23592 0.80588 0.97576 0.97006 0.89804 1.23984 0.99245 1.00233 0.97234 1.21843 0.96440 0.85606 0.92269 0.86892 1.45718 1.10899 1.12536 1.69096 1.18428 0.80432 0.87792 0.77116 1.90128 1.40900 1.64389 1.55736 1.22046 0.96041 0.96774 1.48553 0.91289 1.27131 1.02319 0.96670 0.89538 1.70652 1.36477 1.05896 1.33188 0.82355 0.70686 0.71699 0.78836 1.25672 1.20808 1.21967 1.22478 0.96477 0.94396 0.95545 1.20918 0.96198 0.93234 1.00671 1.21881 1.01328 0.96661 0.97576 1.21389 0.97937 0.98357 0.97050 1.21522 0.98904 0.94733 1.00667 1.21387 0.98893 0.97798 0.95272 0.91944 0.91473 0.91981 0.93680 0.93715 0.89327 0.91380 0.77719 0.91239 0.92317 0.92269 0.93086 0.88914 0.93230 0.92616 0.92933 0.90228 0.92683 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.56 6.50 37.16 0.24 0.80 16 3 O -0.37 -4.81 9.50 -35.23 -0.33 -5.14 16 4 C 0.07 0.94 3.76 -26.00 -0.10 0.84 16 5 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 6 C -0.17 -2.44 7.38 -25.75 -0.19 -2.63 16 7 C 0.15 2.54 3.56 -67.27 -0.24 2.30 16 8 H 0.11 2.19 7.12 -51.93 -0.37 1.83 16 9 N -0.73 -14.86 3.07 -54.57 -0.17 -15.03 16 10 C 0.55 14.10 7.01 -12.99 -0.09 14.01 16 11 O -0.62 -17.06 11.53 5.19 0.06 -17.00 16 12 C -0.60 -16.52 9.96 -35.63 -0.36 -16.87 16 13 H 0.07 1.89 8.05 -52.49 -0.42 1.47 16 14 C 0.06 1.74 5.52 -17.37 -0.10 1.65 16 15 N -0.83 -24.07 13.65 55.55 0.76 -23.32 16 16 Si 1.13 29.84 25.98 -169.99 -4.42 25.42 16 17 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16 18 H -0.28 -7.59 6.80 56.52 0.38 -7.21 16 19 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 20 C -0.09 -1.30 0.74 -154.37 -0.11 -1.41 16 21 C -0.07 -1.08 3.86 -26.79 -0.10 -1.19 16 22 C -0.14 -2.21 5.64 -26.67 -0.15 -2.36 16 23 C -0.11 -1.71 5.86 -26.76 -0.16 -1.86 16 24 C -0.12 -1.98 5.85 -26.67 -0.16 -2.14 16 25 C -0.10 -1.41 5.09 -26.80 -0.14 -1.54 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.30 7.62 -51.93 -0.40 0.90 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.39 7.35 7.21 -40.82 -0.29 7.06 16 34 H 0.28 7.68 8.72 -40.82 -0.36 7.32 16 35 H 0.06 0.88 6.86 -51.93 -0.36 0.52 16 36 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.78 4.97 -51.92 -0.26 1.52 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.62 7.89 -51.93 -0.41 1.22 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -30.10 337.74 -7.85 -37.94 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.57 Total: 3.33 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.26 Total: -11.30 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.59 Total: -38.35 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.27 Total: -22.15 kcal Atomic # 14 Polarization: 29.84 SS G_CDS: -4.42 Total: 25.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.10 -7.85 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153892398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.653 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds