Wall clock time and date at job start Tue Mar 31 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49062 * 2 1 4 4 O 1.42902 * 109.48470 * 120.02812 * 2 1 3 5 5 C 1.42894 * 114.09949 * 181.14044 * 4 2 1 6 6 C 1.53092 * 109.41792 * 298.84258 * 5 4 2 7 7 C 1.53174 * 109.16285 * 57.60756 * 6 5 4 8 8 C 1.53095 * 109.48032 * 239.97315 * 2 1 3 9 9 H 1.09003 * 109.57464 * 62.46861 * 8 2 1 10 10 C 1.50701 * 109.52126 * 302.30973 * 8 2 1 11 11 O 1.21273 * 120.00228 * 334.75771 * 10 8 2 12 12 N 1.34779 * 119.99553 * 154.75146 * 10 8 2 13 13 C 1.46500 * 120.00254 * 5.28075 * 12 10 8 14 14 C 1.50705 * 109.46914 * 93.44175 * 13 12 10 15 15 H 1.08004 * 120.00235 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99732 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00047 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47302 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47421 * 120.00050 * 18 16 14 21 21 H 1.48502 * 109.47443 * 239.99761 * 18 16 14 22 22 C 1.46502 * 119.99534 * 185.28049 * 12 10 8 23 23 C 1.53007 * 109.46902 * 86.24080 * 22 12 10 24 24 C 1.53001 * 117.49442 * 245.68468 * 23 22 12 25 25 C 1.52999 * 60.00114 * 252.51434 * 24 23 22 26 26 H 1.08997 * 109.46890 * 299.96498 * 1 2 3 27 27 H 1.09000 * 109.47052 * 59.97163 * 1 2 3 28 28 H 1.09004 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.48389 * 58.83083 * 5 4 2 30 30 H 1.09004 * 109.48212 * 178.86074 * 5 4 2 31 31 H 1.08996 * 109.52242 * 177.51298 * 6 5 4 32 32 H 1.09003 * 109.52358 * 297.70436 * 6 5 4 33 33 H 1.09007 * 109.54155 * 62.88978 * 7 6 5 34 34 H 1.08996 * 109.54154 * 183.15017 * 7 6 5 35 35 H 1.08999 * 109.46920 * 213.43819 * 13 12 10 36 36 H 1.09000 * 109.46965 * 333.44375 * 13 12 10 37 37 H 0.96998 * 119.99416 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.47036 * 206.23610 * 22 12 10 39 39 H 1.08998 * 109.47315 * 326.23665 * 22 12 10 40 40 H 1.08999 * 115.54897 * 31.39430 * 23 22 12 41 41 H 1.09001 * 117.50117 * 0.02562 * 24 23 22 42 42 H 1.08995 * 117.49494 * 145.02384 * 24 23 22 43 43 H 1.09003 * 117.49873 * 252.51354 * 25 24 23 44 44 H 1.08993 * 117.52148 * 107.48251 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0067 -0.6742 1.1664 5 6 3.4308 -0.7093 1.2790 6 6 4.0177 -1.4600 0.0808 7 6 3.5711 -0.7709 -1.2122 8 6 2.0406 -0.7222 -1.2496 9 1 1.7148 -0.1852 -2.1405 10 6 1.4928 -2.1259 -1.2791 11 8 1.1707 -2.6730 -0.2458 12 7 1.3608 -2.7731 -2.4539 13 6 1.8560 -2.1589 -3.6884 14 6 3.2606 -2.6340 -3.9574 15 1 3.7367 -3.3247 -3.2771 16 6 3.9380 -2.1869 -5.0719 17 7 3.3581 -1.3462 -5.9005 18 14 5.6788 -2.7764 -5.4057 19 1 6.0989 -3.7124 -4.3321 20 1 5.7224 -3.4748 -6.7156 21 1 6.5989 -1.6111 -5.4353 22 6 0.7220 -4.0908 -2.4965 23 6 -0.7935 -3.9192 -2.6192 24 6 -1.6548 -4.3871 -1.4444 25 6 -1.6398 -5.1873 -2.7483 26 1 -0.3633 0.5133 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8193 0.3090 1.2958 30 1 3.7101 -1.2203 2.2004 31 1 5.1059 -1.4496 0.1420 32 1 3.6614 -2.4901 0.0863 33 1 3.9690 0.2436 -1.2409 34 1 3.9393 -1.3326 -2.0707 35 1 1.2108 -2.4430 -4.5197 36 1 1.8536 -1.0742 -3.5808 37 1 3.8349 -1.0314 -6.6844 38 1 1.0953 -4.6480 -3.3557 39 1 0.9530 -4.6363 -1.5815 40 1 -1.1238 -3.0357 -3.1655 41 1 -1.1418 -4.8168 -0.5839 42 1 -2.5520 -3.8114 -1.2175 43 1 -2.5272 -5.1380 -3.3793 44 1 -1.1170 -6.1437 -2.7464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191250814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:37 Heat of formation + Delta-G solvation = -67.519453 kcal Electronic energy + Delta-G solvation = -24128.334765 eV Core-core repulsion = 20853.165603 eV Total energy + Delta-G solvation = -3275.169162 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.10096 -38.01270 -36.60259 -34.66886 -33.02344 -32.47516 -32.33161 -28.19809 -27.38147 -26.13892 -23.92172 -22.96951 -22.05227 -21.87687 -21.03956 -19.93230 -17.85386 -16.62150 -16.44610 -15.88680 -15.46411 -15.15370 -14.88694 -14.47759 -14.28350 -13.98429 -13.83814 -13.18462 -12.83610 -12.39563 -12.30061 -12.10441 -11.93658 -11.79470 -11.66643 -11.35601 -11.22260 -11.21628 -11.14034 -10.90735 -10.76847 -10.58961 -10.26066 -10.16815 -10.03413 -9.96211 -9.67299 -9.53411 -9.02138 -8.63482 -8.49705 -7.61611 -6.20807 -4.26965 3.18359 3.27777 3.31334 3.56721 3.88323 4.17640 4.26894 4.34243 5.07837 5.09803 5.13568 5.23844 5.27572 5.31063 5.39165 5.44280 5.50281 5.67509 5.73764 5.79180 5.83597 5.88468 5.96271 5.99439 6.12359 6.18863 6.21234 6.23313 6.31715 6.34071 6.40698 6.43880 6.57987 6.65059 6.73858 6.84975 6.94913 7.20568 7.61207 7.72135 7.75852 8.05330 8.44878 8.80193 9.18932 9.40485 10.85420 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.008295 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.051649 B = 3374.650518 C = 5029.618571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 H 0.054 0.946 4 O -0.359 6.359 5 C 0.066 3.934 6 C -0.155 4.155 7 C -0.120 4.120 8 C -0.134 4.134 9 H 0.099 0.901 10 C 0.528 3.472 11 O -0.547 6.547 12 N -0.598 5.598 13 C 0.236 3.764 14 C -0.532 4.532 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.152 3.848 23 C -0.158 4.158 24 C -0.173 4.173 25 C -0.182 4.182 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 0.946 7.501 8.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.049 3.951 3 H 0.072 0.928 4 O -0.278 6.278 5 C -0.011 4.011 6 C -0.193 4.193 7 C -0.157 4.157 8 C -0.155 4.155 9 H 0.117 0.883 10 C 0.316 3.684 11 O -0.426 6.426 12 N -0.329 5.329 13 C 0.116 3.884 14 C -0.570 4.570 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.029 3.971 23 C -0.178 4.178 24 C -0.210 4.210 25 C -0.220 4.220 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.268 0.676 7.987 9.081 hybrid contribution 1.260 -0.070 -0.842 1.517 sum -3.008 0.606 7.145 7.776 Atomic orbital electron populations 1.21835 0.93503 1.03936 1.01324 1.21835 0.94939 0.93564 0.84782 0.92771 1.87997 1.19950 1.77949 1.41884 1.22454 0.82035 0.98431 0.98214 1.22168 1.00163 1.01400 0.95539 1.21681 0.92742 1.01489 0.99819 1.21966 0.98008 0.95532 1.00014 0.88301 1.20101 0.77609 0.87514 0.83193 1.90616 1.51165 1.68302 1.32504 1.48187 1.57351 1.18273 1.09103 1.19451 0.94349 0.94037 0.80581 1.21500 0.99066 1.27879 1.08579 0.92038 1.24930 0.98248 0.94853 0.95728 1.69931 1.37513 1.31777 1.13564 0.86537 0.84396 0.78785 0.78381 1.19629 1.20862 1.20815 1.20765 0.88460 0.85796 1.02111 1.22791 0.94582 0.98133 1.02270 1.22929 1.01912 1.03743 0.92390 1.22894 1.02180 0.95925 1.00984 0.92451 0.91777 0.90539 0.94205 0.89772 0.91598 0.90767 0.92037 0.87422 0.94981 0.94260 0.92603 0.90205 0.91181 0.88085 0.88728 0.89650 0.89283 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.25 37.16 0.34 -1.97 16 2 C 0.11 1.79 2.84 -26.68 -0.08 1.71 16 3 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 4 O -0.36 -6.48 9.00 -55.61 -0.50 -6.98 16 5 C 0.07 1.01 6.84 37.21 0.25 1.27 16 6 C -0.15 -2.60 5.81 -26.59 -0.15 -2.76 16 7 C -0.12 -2.17 5.47 -26.55 -0.15 -2.31 16 8 C -0.13 -2.46 1.83 -91.63 -0.17 -2.63 16 9 H 0.10 1.84 6.19 -51.93 -0.32 1.52 16 10 C 0.53 10.80 5.06 -10.98 -0.06 10.74 16 11 O -0.55 -12.09 12.97 -14.81 -0.19 -12.28 16 12 N -0.60 -12.40 2.46 -175.05 -0.43 -12.84 16 13 C 0.24 5.43 4.90 -5.19 -0.03 5.41 16 14 C -0.53 -13.29 7.31 -34.44 -0.25 -13.54 16 15 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 16 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -23.84 13.29 55.43 0.74 -23.10 16 18 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.15 2.86 5.71 -4.04 -0.02 2.84 16 23 C -0.16 -2.60 5.99 -90.61 -0.54 -3.14 16 24 C -0.17 -2.56 10.18 -26.73 -0.27 -2.83 16 25 C -0.18 -2.48 10.25 -26.73 -0.27 -2.76 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.37 6.28 -51.93 -0.33 1.04 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.44 7.02 -51.93 -0.36 1.08 16 33 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.11 2.25 5.70 -51.93 -0.30 1.96 16 35 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.04 0.93 5.69 -51.93 -0.30 0.64 16 37 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 39 H 0.07 1.35 7.21 -51.93 -0.37 0.98 16 40 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.09 1.47 8.04 -51.93 -0.42 1.05 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -27.84 343.42 -9.15 -36.99 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.43 Total: 6.36 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.49 Total: -8.39 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.31 Total: -35.94 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.69 Total: -19.26 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.84 -9.15 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191250814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.533 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds