Wall clock time and date at job start Tue Mar 31 2020 05:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.49132 * 2 1 4 4 O 1.42903 * 109.48341 * 239.96700 * 2 1 3 5 5 C 1.42903 * 114.09771 * 178.86198 * 4 2 1 6 6 C 1.53092 * 109.41528 * 61.15639 * 5 4 2 7 7 C 1.53172 * 109.16608 * 302.39051 * 6 5 4 8 8 C 1.53095 * 109.47881 * 120.02472 * 2 1 3 9 9 H 1.09005 * 109.57655 * 297.52579 * 8 2 1 10 10 C 1.50696 * 109.52464 * 57.68643 * 8 2 1 11 11 O 1.21288 * 119.99976 * 32.31661 * 10 8 2 12 12 N 1.34782 * 120.00144 * 212.31778 * 10 8 2 13 13 C 1.46492 * 120.00044 * 355.95365 * 12 10 8 14 14 C 1.50699 * 109.47361 * 275.58420 * 13 12 10 15 15 H 1.08003 * 119.99448 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00584 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99414 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00360 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46920 * 89.99815 * 18 16 14 20 20 H 1.48499 * 109.47091 * 210.00092 * 18 16 14 21 21 H 1.48501 * 109.46799 * 330.00003 * 18 16 14 22 22 C 1.46502 * 119.99619 * 175.95361 * 12 10 8 23 23 C 1.53005 * 109.47182 * 274.59154 * 22 12 10 24 24 C 1.52996 * 117.49579 * 176.20918 * 23 22 12 25 25 C 1.52991 * 117.50086 * 244.83219 * 23 22 12 26 26 H 1.09005 * 109.46923 * 299.97412 * 1 2 3 27 27 H 1.08996 * 109.46779 * 59.97438 * 1 2 3 28 28 H 1.09000 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47852 * 301.17135 * 5 4 2 30 30 H 1.08993 * 109.47563 * 181.14123 * 5 4 2 31 31 H 1.08997 * 109.51794 * 182.48425 * 6 5 4 32 32 H 1.09003 * 109.57381 * 62.33230 * 6 5 4 33 33 H 1.08997 * 109.54422 * 297.11720 * 7 6 5 34 34 H 1.08996 * 109.54348 * 176.85050 * 7 6 5 35 35 H 1.09005 * 109.47052 * 35.58195 * 13 12 10 36 36 H 1.08998 * 109.47259 * 155.58013 * 13 12 10 37 37 H 0.96998 * 119.99428 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.46786 * 154.59471 * 22 12 10 39 39 H 1.08999 * 109.47217 * 34.59356 * 22 12 10 40 40 H 1.09005 * 115.55655 * 30.52239 * 23 22 12 41 41 H 1.08996 * 117.50571 * 359.97438 * 24 23 22 42 42 H 1.09004 * 117.49206 * 214.98111 * 24 23 22 43 43 H 1.09000 * 117.50190 * 145.02005 * 25 23 22 44 44 H 1.09005 * 117.50021 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0066 -0.6743 -1.1663 5 6 3.4308 -0.7094 -1.2789 6 6 4.0176 -1.4601 -0.0806 7 6 3.5711 -0.7708 1.2123 8 6 2.0405 -0.7222 1.2496 9 1 1.7148 -0.1851 2.1405 10 6 1.4927 -2.1257 1.2793 11 8 1.2911 -2.7201 0.2415 12 7 1.2266 -2.7206 2.4592 13 6 1.5524 -2.0378 3.7136 14 6 2.9967 -2.2898 4.0624 15 1 3.6106 -2.8975 3.4141 16 6 3.5344 -1.7447 5.2090 17 7 2.7869 -1.0042 5.9981 18 14 5.3244 -2.0577 5.6416 19 1 6.1721 -0.9983 5.0380 20 1 5.4872 -2.0410 7.1176 21 1 5.7369 -3.3828 5.1131 22 6 0.6116 -4.0499 2.4870 23 6 -0.9090 -3.9105 2.3914 24 6 -1.7330 -5.1974 2.3150 25 6 -1.7369 -4.3614 3.5964 26 1 -0.3633 0.5135 0.8903 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8193 0.3088 -1.2957 30 1 3.7100 -1.2204 -2.2002 31 1 5.1058 -1.4498 -0.1418 32 1 3.6623 -2.4906 -0.0856 33 1 3.9689 0.2436 1.2409 34 1 3.9391 -1.3325 2.0708 35 1 1.3884 -0.9664 3.5974 36 1 0.9143 -2.4186 4.5110 37 1 3.1653 -0.6204 6.8046 38 1 0.8726 -4.5515 3.4189 39 1 0.9764 -4.6367 1.6440 40 1 -1.2678 -3.0489 1.8283 41 1 -1.1918 -6.1434 2.3324 42 1 -2.6339 -5.1824 1.7016 43 1 -2.6404 -3.7966 3.8261 44 1 -1.1982 -4.7571 4.4575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191250860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:44 Heat of formation + Delta-G solvation = -67.417761 kcal Electronic energy + Delta-G solvation = -24092.765854 eV Core-core repulsion = 20817.601102 eV Total energy + Delta-G solvation = -3275.164752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09164 -38.01779 -36.65155 -34.61512 -33.02460 -32.46605 -32.36060 -28.25322 -27.36889 -26.09460 -23.90277 -23.02212 -22.07599 -21.85486 -21.03526 -20.02233 -17.79001 -16.55064 -16.41385 -15.97017 -15.54316 -15.10694 -14.95969 -14.53784 -14.22254 -14.01756 -13.86902 -12.98925 -12.87724 -12.35519 -12.32430 -12.06317 -12.01294 -11.79269 -11.65995 -11.41341 -11.26920 -11.24476 -11.12308 -10.95625 -10.79674 -10.60772 -10.25537 -10.16740 -10.05795 -9.96699 -9.69303 -9.50949 -8.99491 -8.63359 -8.48529 -7.62583 -6.20327 -4.26649 3.19116 3.27258 3.30087 3.56002 3.87698 4.17449 4.25708 4.34525 5.05054 5.11400 5.12092 5.23248 5.27247 5.30228 5.39023 5.45368 5.50294 5.67271 5.73761 5.78753 5.82393 5.85819 5.99094 5.99564 6.10461 6.15317 6.21643 6.24004 6.29833 6.36760 6.37911 6.43545 6.52128 6.63014 6.75005 6.83353 6.91718 7.21825 7.60705 7.72349 7.77131 8.06272 8.42321 8.80149 9.18822 9.40641 10.85959 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.008788 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.758046 B = 3185.546283 C = 5003.531686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.105 3.895 3 H 0.056 0.944 4 O -0.360 6.360 5 C 0.068 3.932 6 C -0.157 4.157 7 C -0.115 4.115 8 C -0.133 4.133 9 H 0.103 0.897 10 C 0.528 3.472 11 O -0.550 6.550 12 N -0.598 5.598 13 C 0.239 3.761 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.152 3.848 23 C -0.154 4.154 24 C -0.181 4.181 25 C -0.180 4.180 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 0.239 -7.298 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.047 3.953 3 H 0.074 0.926 4 O -0.279 6.279 5 C -0.009 4.009 6 C -0.195 4.195 7 C -0.152 4.152 8 C -0.154 4.154 9 H 0.121 0.879 10 C 0.316 3.684 11 O -0.429 6.429 12 N -0.329 5.329 13 C 0.119 3.881 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.028 3.972 23 C -0.174 4.174 24 C -0.218 4.218 25 C -0.217 4.217 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.474 -0.051 -7.774 8.515 hybrid contribution 1.239 0.076 0.864 1.512 sum -2.236 0.025 -6.910 7.263 Atomic orbital electron populations 1.21810 0.93573 1.03504 1.01570 1.21865 0.94859 0.93744 0.84861 0.92641 1.87989 1.20045 1.77944 1.41873 1.22424 0.81971 0.98354 0.98185 1.22203 1.00000 1.01680 0.95629 1.21615 0.92878 1.01417 0.99339 1.21948 0.97884 0.95460 1.00146 0.87913 1.20128 0.77224 0.87862 0.83166 1.90630 1.53988 1.65740 1.32574 1.48222 1.59280 1.17497 1.07886 1.19408 0.95984 0.92779 0.79909 1.21480 0.95865 1.32226 1.07570 0.92064 1.24920 0.97963 0.94869 0.95940 1.69920 1.36037 1.33080 1.13731 0.86603 0.84977 0.78885 0.77716 1.20420 1.21078 1.19789 1.20783 0.88721 0.85612 1.02058 1.22770 0.94796 0.98170 1.01627 1.22875 1.02182 0.95561 1.01232 1.23012 1.02364 1.03934 0.92376 0.91518 0.92319 0.91126 0.94250 0.89787 0.91740 0.90502 0.91983 0.88014 0.94690 0.94637 0.92556 0.90550 0.90929 0.88243 0.89000 0.89315 0.89353 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.26 37.16 0.34 -1.96 16 2 C 0.11 1.77 2.85 -26.68 -0.08 1.69 16 3 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 4 O -0.36 -6.53 8.96 -55.65 -0.50 -7.03 16 5 C 0.07 1.05 6.84 37.20 0.25 1.30 16 6 C -0.16 -2.64 5.75 -26.60 -0.15 -2.79 16 7 C -0.11 -2.09 5.51 -26.55 -0.15 -2.23 16 8 C -0.13 -2.49 2.02 -91.63 -0.19 -2.67 16 9 H 0.10 1.99 5.89 -51.93 -0.31 1.68 16 10 C 0.53 10.91 4.98 -10.99 -0.05 10.86 16 11 O -0.55 -12.35 12.97 -14.87 -0.19 -12.54 16 12 N -0.60 -12.45 2.48 -175.06 -0.43 -12.88 16 13 C 0.24 5.52 4.94 -5.20 -0.03 5.50 16 14 C -0.53 -13.29 7.51 -34.44 -0.26 -13.55 16 15 H 0.06 1.57 7.31 -52.48 -0.38 1.18 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -23.83 13.29 55.43 0.74 -23.10 16 18 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 C 0.15 2.85 5.65 -4.04 -0.02 2.82 16 23 C -0.15 -2.54 5.98 -90.62 -0.54 -3.08 16 24 C -0.18 -2.46 10.25 -26.74 -0.27 -2.74 16 25 C -0.18 -2.58 10.18 -26.74 -0.27 -2.85 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.26 6.55 -51.93 -0.34 0.92 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.49 6.76 -51.93 -0.35 1.14 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 2.11 5.58 -51.93 -0.29 1.82 16 35 H 0.04 0.84 5.93 -51.93 -0.31 0.53 16 36 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.08 1.42 7.77 -51.93 -0.40 1.01 16 39 H 0.07 1.40 7.51 -51.93 -0.39 1.01 16 40 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -27.96 342.99 -9.14 -37.10 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.39 Total: 6.35 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.51 Total: -8.10 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.30 Total: -35.98 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.69 Total: -19.57 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.96 -9.14 -37.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191250860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.315 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds