Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00074 * 2 1 4 4 C 1.52997 * 112.85013 * 65.00742 * 3 2 1 5 5 C 1.50704 * 109.47051 * 49.24649 * 4 3 2 6 6 O 1.21289 * 119.99958 * 5.62127 * 5 4 3 7 7 N 1.34777 * 119.99969 * 185.62189 * 5 4 3 8 8 C 1.37098 * 120.00008 * 179.97438 * 7 5 4 9 9 H 1.07994 * 120.00469 * 223.19178 * 8 7 5 10 10 C 1.38953 * 119.99913 * 43.19093 * 8 7 5 11 11 N 1.31405 * 120.00209 * 208.86025 * 10 8 7 12 12 Si 1.86805 * 119.99840 * 28.85809 * 10 8 7 13 13 H 1.48492 * 109.47245 * 86.84722 * 12 10 8 14 14 H 1.48499 * 109.46969 * 206.84732 * 12 10 8 15 15 H 1.48500 * 109.47139 * 326.84603 * 12 10 8 16 16 C 1.46503 * 120.00120 * 0.02562 * 7 5 4 17 17 C 1.55240 * 110.46401 * 229.57493 * 16 7 5 18 18 C 1.54896 * 102.58610 * 203.39012 * 17 16 7 19 19 C 1.54267 * 104.30718 * 37.93397 * 18 17 16 20 20 C 1.53877 * 106.60257 * 336.32235 * 19 18 17 21 21 C 1.53776 * 113.69321 * 196.28241 * 3 2 1 22 22 C 1.53777 * 87.08168 * 89.12422 * 21 3 2 23 23 C 1.53778 * 87.08464 * 25.43199 * 22 21 3 24 24 H 1.09004 * 109.46797 * 304.90385 * 1 2 3 25 25 H 1.08996 * 109.47012 * 64.90217 * 1 2 3 26 26 H 1.09002 * 109.46962 * 184.90289 * 1 2 3 27 27 H 1.09001 * 109.47382 * 289.24465 * 4 3 2 28 28 H 1.09002 * 109.47283 * 169.24770 * 4 3 2 29 29 H 0.97005 * 120.00275 * 179.97438 * 11 10 8 30 30 H 1.08999 * 110.43379 * 352.22355 * 16 7 5 31 31 H 1.09005 * 110.89632 * 85.10137 * 17 16 7 32 32 H 1.08996 * 110.77061 * 321.62417 * 17 16 7 33 33 H 1.09000 * 110.48419 * 279.19329 * 18 17 16 34 34 H 1.08999 * 110.48016 * 156.67615 * 18 17 16 35 35 H 1.08996 * 110.03197 * 95.60964 * 19 18 17 36 36 H 1.09000 * 110.03073 * 216.98282 * 19 18 17 37 37 H 1.09001 * 110.03065 * 119.28908 * 20 19 18 38 38 H 1.09001 * 110.02739 * 240.66488 * 20 19 18 39 39 H 1.08999 * 113.61370 * 203.67532 * 21 3 2 40 40 H 1.09000 * 113.60970 * 334.57297 * 21 3 2 41 41 H 1.09008 * 113.61540 * 270.88485 * 22 21 3 42 42 H 1.08997 * 113.69203 * 139.99613 * 22 21 3 43 43 H 1.09000 * 113.61779 * 220.01909 * 23 22 21 44 44 H 1.09006 * 113.60949 * 89.11638 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7078 2.0905 1.2779 5 6 2.0130 1.2325 2.4787 6 8 2.5263 0.1436 2.3312 7 7 1.7154 1.6752 3.7164 8 6 1.9925 0.8945 4.8087 9 1 1.2683 0.8025 5.6045 10 6 3.2053 0.2214 4.8919 11 7 3.2861 -0.9069 5.5606 12 14 4.7210 0.9206 4.0531 13 1 5.3959 1.8766 4.9672 14 1 5.6540 -0.1843 3.7156 15 1 4.3178 1.6253 2.8097 16 6 1.0947 2.9903 3.8945 17 6 1.8579 3.8095 4.9698 18 6 0.7847 4.8175 5.4509 19 6 -0.5259 4.0037 5.4597 20 6 -0.3287 2.8420 4.4701 21 6 3.4964 1.3202 -0.3948 22 6 3.0270 1.4712 -1.8514 23 6 1.7410 2.0996 -1.2891 24 1 -0.3633 0.5881 0.8428 25 1 -0.3633 0.4359 -0.9306 26 1 -0.3633 -1.0239 0.0878 27 1 0.6548 2.3721 1.2907 28 1 2.3244 2.9889 1.3070 29 1 4.1327 -1.3769 5.6183 30 1 1.0692 3.5303 2.9480 31 1 2.7083 4.3310 4.5303 32 1 2.1792 3.1668 5.7894 33 1 0.7093 5.6546 4.7569 34 1 1.0190 5.1743 6.4538 35 1 -0.7167 3.6141 6.4596 36 1 -1.3573 4.6314 5.1390 37 1 -0.4239 1.8886 4.9898 38 1 -1.0649 2.9052 3.6688 39 1 4.0395 2.1873 -0.0189 40 1 4.0100 0.3794 -0.1969 41 1 2.8628 0.5202 -2.3581 42 1 3.6316 2.1639 -2.4368 43 1 0.8374 1.7880 -1.8132 44 1 1.8042 3.1799 -1.1578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234708254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -46.038403 kcal Electronic energy + Delta-G solvation = -24296.365622 eV Core-core repulsion = 21022.127948 eV Total energy + Delta-G solvation = -3274.237674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.00734 -38.62352 -36.75400 -35.16646 -33.42280 -31.89846 -29.78447 -28.18038 -27.01455 -26.72914 -25.29834 -24.64600 -22.49417 -20.14938 -19.94519 -19.41965 -18.89416 -16.73392 -16.10108 -15.76851 -15.48619 -15.16363 -15.01065 -14.58545 -13.99810 -13.89557 -13.65877 -13.42277 -12.89635 -12.83508 -12.53207 -12.34301 -12.05038 -11.78747 -11.43205 -11.26004 -11.05110 -10.91751 -10.81196 -10.71645 -10.68944 -10.57742 -10.56341 -10.20540 -10.10056 -9.95828 -9.73561 -9.66598 -9.02683 -8.53970 -8.13107 -7.36609 -6.16253 -3.78216 3.34417 3.53195 3.55124 4.02503 4.08886 4.46436 4.62424 4.78975 4.82823 5.05719 5.09466 5.10058 5.15593 5.25604 5.41087 5.54450 5.58754 5.71001 5.76508 5.80128 5.84273 5.86463 5.91469 5.95307 5.97390 6.04469 6.04688 6.09830 6.10809 6.17560 6.33009 6.34902 6.43348 6.46141 6.48600 6.52664 6.72983 6.86924 7.03917 7.73464 7.95557 8.18014 8.96453 9.16931 9.58781 10.08881 10.92339 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.008158 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.929409 B = 3431.274498 C = 4343.966513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.118 3.882 4 C -0.156 4.156 5 C 0.471 3.529 6 O -0.527 6.527 7 N -0.466 5.466 8 C -0.351 4.351 9 H 0.088 0.912 10 C 0.105 3.895 11 N -0.852 5.852 12 Si 0.899 3.101 13 H -0.298 1.298 14 H -0.292 1.292 15 H -0.267 1.267 16 C 0.126 3.874 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.135 4.135 23 C -0.168 4.168 24 H 0.040 0.960 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.270 0.730 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 10.996 -9.133 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.253 6.253 3 C 0.077 3.923 4 C -0.197 4.197 5 C 0.259 3.741 6 O -0.405 6.405 7 N -0.189 5.189 8 C -0.476 4.476 9 H 0.106 0.894 10 C -0.105 4.105 11 N -0.486 5.486 12 Si 0.728 3.272 13 H -0.226 1.226 14 H -0.218 1.218 15 H -0.192 1.192 16 C 0.021 3.979 17 C -0.167 4.167 18 C -0.160 4.160 19 C -0.156 4.156 20 C -0.171 4.171 21 C -0.157 4.157 22 C -0.172 4.172 23 C -0.206 4.206 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.841 10.057 -9.130 14.420 hybrid contribution 0.494 0.663 -0.260 0.867 sum -4.346 10.719 -9.390 14.899 Atomic orbital electron populations 1.22637 0.82362 1.02401 0.99002 1.88062 1.18375 1.24537 1.94337 1.22080 0.95185 0.83900 0.91131 1.22221 1.02278 0.99699 0.95507 1.19943 0.83298 0.87209 0.83626 1.90548 1.43916 1.21547 1.84517 1.43714 1.56450 1.13650 1.05080 1.18431 1.02113 1.26644 1.00384 0.89402 1.25177 0.98390 0.93460 0.93482 1.69873 1.26382 1.11623 1.40745 0.86516 0.82333 0.78601 0.79760 1.22648 1.21817 1.19197 1.22039 0.92560 0.86068 0.97240 1.22838 0.96681 0.96937 1.00237 1.22293 0.95574 0.97635 1.00547 1.22041 0.97073 0.96800 0.99689 1.22449 0.96717 0.99600 0.98336 1.22914 0.94868 1.03190 0.94745 1.22765 0.96912 1.00864 0.96688 1.23597 0.98782 1.00124 0.98070 0.94124 0.94972 0.90030 0.90452 0.89660 0.92052 0.91176 0.92628 0.88953 0.92441 0.92147 0.92081 0.92759 0.90248 0.92983 0.89562 0.90124 0.90010 0.91721 0.91228 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.63 101.05 1.07 1.59 16 2 O -0.34 -6.60 9.08 -55.73 -0.51 -7.10 16 3 C 0.12 2.04 0.40 -89.81 -0.04 2.01 16 4 C -0.16 -2.83 3.04 -27.88 -0.08 -2.92 16 5 C 0.47 11.21 5.22 -10.98 -0.06 11.15 16 6 O -0.53 -14.77 11.69 -14.95 -0.17 -14.94 16 7 N -0.47 -10.97 2.14 -105.77 -0.23 -11.20 16 8 C -0.35 -9.68 7.68 -14.93 -0.11 -9.80 16 9 H 0.09 2.56 7.26 -52.49 -0.38 2.18 16 10 C 0.10 3.08 4.54 -17.47 -0.08 3.00 16 11 N -0.85 -26.26 13.96 55.50 0.77 -25.49 16 12 Si 0.90 23.97 26.25 -169.99 -4.46 19.51 16 13 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 14 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 15 H -0.27 -6.95 5.66 56.52 0.32 -6.63 16 16 C 0.13 2.33 3.10 -66.08 -0.20 2.12 16 17 C -0.13 -2.25 6.39 -24.54 -0.16 -2.40 16 18 C -0.12 -1.69 6.82 -25.07 -0.17 -1.86 16 19 C -0.12 -1.65 6.80 -25.61 -0.17 -1.82 16 20 C -0.13 -2.21 6.44 -25.62 -0.16 -2.38 16 21 C -0.12 -2.02 7.32 -25.92 -0.19 -2.21 16 22 C -0.13 -1.79 8.02 -25.92 -0.21 -2.00 16 23 C -0.17 -2.20 7.21 -25.92 -0.19 -2.38 16 24 H 0.04 0.66 6.88 -51.93 -0.36 0.30 16 25 H 0.03 0.41 6.88 -51.93 -0.36 0.06 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.24 6.88 -51.93 -0.36 0.88 16 28 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 29 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 30 H 0.07 1.14 5.95 -51.93 -0.31 0.83 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.88 6.99 -51.93 -0.36 1.51 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.55 6.84 -51.93 -0.36 1.20 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.85 6.83 -51.93 -0.35 0.49 16 44 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -33.25 334.63 -7.82 -41.07 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.51 Total: 1.01 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.75 Total: -7.89 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.55 Total: -36.69 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.68 Total: -22.05 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.46 Total: 19.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.25 -7.82 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234708254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.972 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds