Wall clock time and date at job start Tue Mar 31 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50692 * 120.00279 * 2 1 4 4 C 1.53001 * 109.47397 * 125.00285 * 3 2 1 5 5 O 1.42899 * 109.47413 * 180.02562 * 4 3 2 6 6 C 1.42900 * 114.00326 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47074 * 29.99168 * 6 5 4 8 8 C 1.53006 * 109.46719 * 270.00091 * 6 5 4 9 9 C 1.50696 * 109.47396 * 149.99750 * 6 5 4 10 10 O 1.21278 * 120.00358 * 16.28441 * 9 6 5 11 11 N 1.34785 * 119.99773 * 196.28359 * 9 6 5 12 12 C 1.46498 * 119.99791 * 5.12151 * 11 9 6 13 13 C 1.50706 * 109.47095 * 264.11195 * 12 11 9 14 14 H 1.08004 * 119.99643 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00036 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99675 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99817 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47399 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47197 * 120.00114 * 17 15 13 20 20 H 1.48501 * 109.46835 * 240.00115 * 17 15 13 21 21 C 1.46499 * 119.99668 * 185.12290 * 11 9 6 22 22 C 1.53005 * 109.46880 * 274.72963 * 21 11 9 23 23 C 1.53000 * 117.49702 * 242.87605 * 22 21 11 24 24 C 1.52995 * 117.49764 * 174.21587 * 22 21 11 25 25 H 1.07998 * 119.99898 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99537 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00039 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.47314 * 5.00436 * 3 2 1 29 29 H 1.08998 * 109.47513 * 245.00497 * 3 2 1 30 30 H 1.08999 * 109.47168 * 60.00525 * 4 3 2 31 31 H 1.09004 * 109.46973 * 300.00117 * 4 3 2 32 32 H 1.08997 * 109.47017 * 184.53277 * 8 6 5 33 33 H 1.09003 * 109.46840 * 304.52482 * 8 6 5 34 34 H 1.08999 * 109.47423 * 64.52994 * 8 6 5 35 35 H 1.08996 * 109.47555 * 24.11570 * 12 11 9 36 36 H 1.09001 * 109.46795 * 144.12130 * 12 11 9 37 37 H 0.97003 * 119.99658 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.47391 * 34.72823 * 21 11 9 39 39 H 1.08996 * 109.46796 * 154.73190 * 21 11 9 40 40 H 1.08993 * 115.54875 * 28.54572 * 22 21 11 41 41 H 1.09000 * 117.49905 * 359.97438 * 23 22 21 42 42 H 1.08995 * 117.49842 * 145.02466 * 23 22 21 43 43 H 1.08999 * 117.50125 * 214.98125 * 24 22 21 44 44 H 1.09002 * 117.49752 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5707 1.1819 6 6 4.6888 2.6995 2.2509 7 1 5.0657 1.7139 2.5240 8 6 4.0008 3.3355 3.4606 9 6 5.8358 3.5714 1.8093 10 8 5.7223 4.2702 0.8247 11 7 6.9880 3.5745 2.5088 12 6 7.1664 2.6493 3.6306 13 6 6.8234 3.3507 4.9196 14 1 6.5040 4.3823 4.9046 15 6 6.9173 2.6754 6.1180 16 7 7.3067 1.4194 6.1362 17 14 6.4915 3.5446 7.7157 18 1 6.0848 4.9430 7.4253 19 1 5.3731 2.8320 8.3840 20 1 7.6786 3.5499 8.6078 21 6 8.0618 4.5032 2.1472 22 6 8.9155 3.8881 1.0364 23 6 10.3854 3.6028 1.3511 24 6 10.0118 4.7610 0.4226 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 3.7401 0.5065 1.0919 31 1 2.4773 1.2355 2.1130 32 1 4.7353 3.5076 4.2473 33 1 3.5540 4.2853 3.1666 34 1 3.2231 2.6668 3.8295 35 1 6.5106 1.7887 3.4996 36 1 8.2032 2.3145 3.6639 37 1 7.3724 0.9442 6.9793 38 1 7.6291 5.4400 1.7962 39 1 8.6852 4.6955 3.0204 40 1 8.3978 3.1921 0.3765 41 1 10.7442 3.8537 2.3493 42 1 10.8348 2.7193 0.8978 43 1 10.2157 4.6390 -0.6412 44 1 10.1252 5.7734 0.8104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264084064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:40 Heat of formation + Delta-G solvation = -46.156428 kcal Electronic energy + Delta-G solvation = -22637.008207 eV Core-core repulsion = 19362.765415 eV Total energy + Delta-G solvation = -3274.242792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.49859 -37.71116 -36.70456 -34.97672 -34.75953 -32.54115 -31.10506 -28.85485 -27.75176 -26.41795 -23.61234 -22.96189 -22.46913 -22.06627 -20.42830 -19.88625 -18.42411 -16.78749 -16.55776 -16.23972 -15.75484 -15.35310 -15.01884 -14.65276 -14.50925 -14.34363 -13.60598 -13.36943 -13.14933 -12.65789 -12.46072 -12.22892 -11.99543 -11.92149 -11.70844 -11.41542 -11.29282 -11.19205 -11.15621 -10.96910 -10.93168 -10.82136 -10.57298 -10.25637 -10.11326 -9.76714 -9.53108 -9.47798 -9.30876 -8.79121 -8.56156 -7.74792 -6.25758 -4.32229 2.14380 3.16870 3.26374 3.29255 3.38577 3.49533 4.12969 4.24298 4.40106 4.92571 5.04465 5.07397 5.10188 5.22388 5.26548 5.29344 5.36790 5.46397 5.57385 5.59856 5.73295 5.81692 5.83618 5.87164 5.98826 6.03941 6.14661 6.17372 6.23896 6.35036 6.38196 6.42772 6.52015 6.60554 6.65998 6.76108 7.02432 7.13791 7.42079 7.61229 7.68977 7.97611 8.31996 8.72845 9.02242 9.34371 10.80497 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.005685 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.170091 B = 4924.489504 C = 6950.010671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C -0.092 4.092 4 C 0.065 3.935 5 O -0.368 6.368 6 C 0.080 3.920 7 H 0.085 0.915 8 C -0.181 4.181 9 C 0.518 3.482 10 O -0.553 6.553 11 N -0.591 5.591 12 C 0.234 3.766 13 C -0.537 4.537 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.893 3.107 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.155 3.845 22 C -0.155 4.155 23 C -0.180 4.180 24 C -0.181 4.181 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -1.311 -7.520 8.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.166 4.166 3 C -0.130 4.130 4 C -0.012 4.012 5 O -0.286 6.286 6 C 0.019 3.981 7 H 0.103 0.897 8 C -0.239 4.239 9 C 0.305 3.695 10 O -0.432 6.432 11 N -0.323 5.323 12 C 0.114 3.886 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.720 3.280 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.032 3.968 22 C -0.174 4.174 23 C -0.217 4.217 24 C -0.218 4.218 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.018 -0.965 -8.029 9.030 hybrid contribution -0.123 -0.072 1.260 1.268 sum -4.141 -1.037 -6.769 8.003 Atomic orbital electron populations 1.23859 0.95881 1.01847 1.01517 1.22858 0.96009 0.98218 0.99533 1.20644 0.97960 0.95546 0.98817 1.22439 0.94066 0.86765 0.97958 1.87946 1.54319 1.36567 1.49784 1.21896 0.88823 0.99666 0.87687 0.89750 1.22482 1.02564 1.00419 0.98403 1.20221 0.83272 0.83150 0.82870 1.90605 1.82498 1.43563 1.26545 1.48120 1.13219 1.38210 1.32757 1.19522 0.98445 0.88065 0.82551 1.21490 1.46298 0.98887 0.90908 0.91640 1.24942 0.94728 0.94803 0.99176 1.69929 1.46111 1.09398 1.27054 0.86513 0.78271 0.79989 0.83218 1.19498 1.20747 1.20802 1.20820 0.88327 0.91983 0.95701 1.22755 0.90527 1.02870 1.01281 1.23035 0.98464 0.99494 1.00666 1.22892 1.04296 0.96048 0.98580 0.88481 0.88497 0.87213 0.90689 0.90112 0.93380 0.93195 0.86532 0.92671 0.92664 0.94440 0.94397 0.92478 0.91012 0.89889 0.88144 0.88595 0.89365 0.89309 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 14.32 29.02 0.42 -1.43 16 2 C -0.15 -1.57 9.52 -36.03 -0.34 -1.91 16 3 C -0.09 -1.16 6.03 -27.89 -0.17 -1.33 16 4 C 0.06 0.96 5.73 37.16 0.21 1.17 16 5 O -0.37 -6.99 9.57 -54.59 -0.52 -7.51 16 6 C 0.08 1.57 2.38 -27.88 -0.07 1.51 16 7 H 0.08 1.63 5.99 -51.93 -0.31 1.32 16 8 C -0.18 -3.46 9.43 37.16 0.35 -3.11 16 9 C 0.52 11.31 6.92 -10.98 -0.08 11.24 16 10 O -0.55 -13.36 16.29 -13.80 -0.22 -13.58 16 11 N -0.59 -12.46 2.47 -175.06 -0.43 -12.89 16 12 C 0.23 5.35 4.81 -5.19 -0.02 5.32 16 13 C -0.54 -13.13 6.82 -34.44 -0.23 -13.36 16 14 H 0.07 1.63 7.57 -52.48 -0.40 1.23 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.38 13.29 55.43 0.74 -22.64 16 17 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.16 2.92 5.62 -4.04 -0.02 2.89 16 22 C -0.15 -2.60 5.98 -90.62 -0.54 -3.14 16 23 C -0.18 -2.60 10.18 -26.69 -0.27 -2.87 16 24 C -0.18 -2.49 10.25 -26.70 -0.27 -2.76 16 25 H 0.10 0.78 8.06 -52.49 -0.42 0.35 16 26 H 0.10 0.88 7.84 -52.48 -0.41 0.47 16 27 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.07 0.94 7.79 -51.92 -0.40 0.53 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 32 H 0.12 2.47 4.67 -51.93 -0.24 2.22 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.94 7.98 -51.93 -0.41 0.52 16 35 H 0.04 0.89 5.85 -51.93 -0.30 0.58 16 36 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.07 1.37 7.65 -51.93 -0.40 0.97 16 39 H 0.08 1.53 7.77 -51.93 -0.40 1.12 16 40 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 41 H 0.10 1.38 8.03 -51.93 -0.42 0.96 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -28.10 364.51 -8.59 -36.69 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.48 Total: 5.99 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.14 Total: -6.19 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.30 Total: -35.53 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.75 Total: -21.09 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.10 -8.59 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264084064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.465 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds