Wall clock time and date at job start Tue Mar 31 2020 05:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50692 * 120.00279 * 2 1 4 4 C 1.53001 * 109.47397 * 125.00285 * 3 2 1 5 5 O 1.42899 * 109.47413 * 180.02562 * 4 3 2 6 6 C 1.42900 * 114.00326 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47074 * 29.99168 * 6 5 4 8 8 C 1.53006 * 109.46719 * 270.00091 * 6 5 4 9 9 C 1.50696 * 109.47396 * 149.99750 * 6 5 4 10 10 O 1.21278 * 120.00358 * 16.28441 * 9 6 5 11 11 N 1.34785 * 119.99773 * 196.28359 * 9 6 5 12 12 C 1.46498 * 119.99791 * 5.12151 * 11 9 6 13 13 C 1.50706 * 109.47095 * 264.11195 * 12 11 9 14 14 H 1.08004 * 119.99643 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00036 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99675 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99817 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47399 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47197 * 120.00114 * 17 15 13 20 20 H 1.48501 * 109.46835 * 240.00115 * 17 15 13 21 21 C 1.46499 * 119.99668 * 185.12290 * 11 9 6 22 22 C 1.53005 * 109.46880 * 274.72963 * 21 11 9 23 23 C 1.53000 * 117.49702 * 242.87605 * 22 21 11 24 24 C 1.52995 * 117.49764 * 174.21587 * 22 21 11 25 25 H 1.07998 * 119.99898 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99537 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00039 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.47314 * 5.00436 * 3 2 1 29 29 H 1.08998 * 109.47513 * 245.00497 * 3 2 1 30 30 H 1.08999 * 109.47168 * 60.00525 * 4 3 2 31 31 H 1.09004 * 109.46973 * 300.00117 * 4 3 2 32 32 H 1.08997 * 109.47017 * 184.53277 * 8 6 5 33 33 H 1.09003 * 109.46840 * 304.52482 * 8 6 5 34 34 H 1.08999 * 109.47423 * 64.52994 * 8 6 5 35 35 H 1.08996 * 109.47555 * 24.11570 * 12 11 9 36 36 H 1.09001 * 109.46795 * 144.12130 * 12 11 9 37 37 H 0.97003 * 119.99658 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.47391 * 34.72823 * 21 11 9 39 39 H 1.08996 * 109.46796 * 154.73190 * 21 11 9 40 40 H 1.08993 * 115.54875 * 28.54572 * 22 21 11 41 41 H 1.09000 * 117.49905 * 359.97438 * 23 22 21 42 42 H 1.08995 * 117.49842 * 145.02466 * 23 22 21 43 43 H 1.08999 * 117.50125 * 214.98125 * 24 22 21 44 44 H 1.09002 * 117.49752 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5707 1.1819 6 6 4.6888 2.6995 2.2509 7 1 5.0657 1.7139 2.5240 8 6 4.0008 3.3355 3.4606 9 6 5.8358 3.5714 1.8093 10 8 5.7223 4.2702 0.8247 11 7 6.9880 3.5745 2.5088 12 6 7.1664 2.6493 3.6306 13 6 6.8234 3.3507 4.9196 14 1 6.5040 4.3823 4.9046 15 6 6.9173 2.6754 6.1180 16 7 7.3067 1.4194 6.1362 17 14 6.4915 3.5446 7.7157 18 1 6.0848 4.9430 7.4253 19 1 5.3731 2.8320 8.3840 20 1 7.6786 3.5499 8.6078 21 6 8.0618 4.5032 2.1472 22 6 8.9155 3.8881 1.0364 23 6 10.3854 3.6028 1.3511 24 6 10.0118 4.7610 0.4226 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 3.7401 0.5065 1.0919 31 1 2.4773 1.2355 2.1130 32 1 4.7353 3.5076 4.2473 33 1 3.5540 4.2853 3.1666 34 1 3.2231 2.6668 3.8295 35 1 6.5106 1.7887 3.4996 36 1 8.2032 2.3145 3.6639 37 1 7.3724 0.9442 6.9793 38 1 7.6291 5.4400 1.7962 39 1 8.6852 4.6955 3.0204 40 1 8.3978 3.1921 0.3765 41 1 10.7442 3.8537 2.3493 42 1 10.8348 2.7193 0.8978 43 1 10.2157 4.6390 -0.6412 44 1 10.1252 5.7734 0.8104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264084064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:39 Heat of formation + Delta-G solvation = -59.047081 kcal Electronic energy + Delta-G solvation = -22637.567187 eV Core-core repulsion = 19362.765415 eV Total energy + Delta-G solvation = -3274.801772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16008 -39.09249 -38.07404 -36.52396 -35.96380 -34.42741 -32.53426 -30.00572 -29.49571 -28.06388 -25.15963 -24.66416 -23.75269 -23.20778 -21.79752 -20.78488 -20.02322 -18.54727 -18.26107 -17.86442 -17.06959 -16.68800 -16.50016 -16.17266 -15.84706 -15.75872 -14.99044 -14.72315 -14.38706 -14.29356 -14.06236 -13.63182 -13.47148 -13.42935 -13.22379 -13.03205 -12.81762 -12.65511 -12.58017 -12.33846 -12.19542 -12.05433 -12.00245 -11.94494 -11.67034 -11.35126 -10.89653 -10.79896 -10.59293 -10.32733 -10.26338 -9.50439 -8.18967 -6.30918 1.33940 1.42420 1.47215 1.56104 1.66033 1.97286 2.42250 2.87225 2.98885 3.12011 3.64808 3.85808 3.93817 3.97252 4.03505 4.11525 4.15252 4.21265 4.26933 4.39581 4.44548 4.46723 4.68960 4.76555 4.78294 4.81828 4.85942 4.89643 4.93022 5.01639 5.03443 5.11254 5.20887 5.26062 5.27318 5.43028 5.67043 5.72654 5.80209 5.86067 6.05245 6.15230 6.54225 6.80701 7.26699 7.40480 8.87064 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.005685 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.170091 B = 4924.489504 C = 6950.010671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 C -0.087 4.087 4 C 0.057 3.943 5 O -0.386 6.386 6 C 0.084 3.916 7 H 0.085 0.915 8 C -0.173 4.173 9 C 0.511 3.489 10 O -0.581 6.581 11 N -0.590 5.590 12 C 0.249 3.751 13 C -0.537 4.537 14 H 0.059 0.941 15 C 0.028 3.972 16 N -0.916 5.916 17 Si 0.950 3.050 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.154 3.846 22 C -0.182 4.182 23 C -0.171 4.171 24 C -0.158 4.158 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.023 0.977 37 H 0.268 0.732 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -1.382 -7.396 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.182 4.182 3 C -0.124 4.124 4 C -0.019 4.019 5 O -0.305 6.305 6 C 0.024 3.976 7 H 0.103 0.897 8 C -0.230 4.230 9 C 0.299 3.701 10 O -0.462 6.462 11 N -0.321 5.321 12 C 0.129 3.871 13 C -0.575 4.575 14 H 0.077 0.923 15 C -0.173 4.173 16 N -0.555 5.555 17 Si 0.776 3.224 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.207 1.207 21 C 0.031 3.969 22 C -0.201 4.201 23 C -0.208 4.208 24 C -0.195 4.195 25 H 0.134 0.866 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.404 -1.033 -7.906 9.109 hybrid contribution -0.030 -0.062 1.170 1.172 sum -4.434 -1.095 -6.736 8.138 Atomic orbital electron populations 1.24080 0.95540 1.02938 0.99298 1.22812 0.96409 0.97479 1.01484 1.20599 0.97456 0.96853 0.97479 1.22719 0.94355 0.85327 0.99484 1.87928 1.54347 1.38789 1.49466 1.21790 0.88531 0.99145 0.88144 0.89704 1.22367 1.02391 1.00899 0.97387 1.20651 0.83832 0.83104 0.82466 1.90575 1.83020 1.44910 1.27666 1.48141 1.13810 1.38036 1.32103 1.19219 0.97130 0.88031 0.82726 1.21574 1.45854 0.98541 0.91556 0.92282 1.25555 0.94651 0.95273 1.01787 1.70011 1.47148 1.10527 1.27840 0.85621 0.77972 0.78999 0.79830 1.19332 1.20362 1.20688 1.20912 0.88003 0.91480 0.96493 1.22549 0.91460 1.04664 1.01452 1.23099 0.96023 1.00459 1.01174 1.23016 1.00761 0.96281 0.99479 0.86591 0.88216 0.86246 0.90877 0.90765 0.92829 0.92350 0.88517 0.92734 0.90597 0.95211 0.95893 0.92307 0.91702 0.89770 0.90120 0.88460 0.88165 0.87645 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 14.32 67.78 0.97 -2.08 16 2 C -0.16 -3.21 9.52 25.65 0.24 -2.97 16 3 C -0.09 -2.12 6.03 29.85 0.18 -1.94 16 4 C 0.06 1.67 5.73 71.98 0.41 2.08 16 5 O -0.39 -14.72 9.57 -130.47 -1.25 -15.96 16 6 C 0.08 3.36 2.38 29.85 0.07 3.43 16 7 H 0.09 3.33 5.99 -2.39 -0.01 3.31 16 8 C -0.17 -6.55 9.43 71.98 0.68 -5.87 16 9 C 0.51 22.79 6.92 87.65 0.61 23.39 16 10 O -0.58 -28.62 16.29 15.49 0.25 -28.36 16 11 N -0.59 -25.36 2.47 -826.15 -2.04 -27.40 16 12 C 0.25 11.59 4.81 85.64 0.41 12.00 16 13 C -0.54 -26.30 6.82 25.60 0.17 -26.12 16 14 H 0.06 2.94 7.57 -2.91 -0.02 2.92 16 15 C 0.03 1.41 5.46 84.66 0.46 1.87 16 16 N -0.92 -48.19 13.29 21.45 0.28 -47.90 16 17 Si 0.95 39.89 29.54 68.60 2.03 41.92 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 21 C 0.15 5.85 5.62 86.38 0.49 6.34 16 22 C -0.18 -6.09 5.98 -10.79 -0.06 -6.15 16 23 C -0.17 -4.71 10.18 30.62 0.31 -4.40 16 24 C -0.16 -4.07 10.25 30.62 0.31 -3.76 16 25 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 26 H 0.10 1.61 7.84 -2.91 -0.02 1.59 16 27 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.07 1.78 7.79 -2.38 -0.02 1.76 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.06 1.59 7.98 -2.38 -0.02 1.57 16 32 H 0.10 4.09 4.67 -2.39 -0.01 4.08 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.51 7.98 -2.39 -0.02 2.49 16 35 H 0.03 1.44 5.85 -2.39 -0.01 1.42 16 36 H 0.02 1.14 8.12 -2.39 -0.02 1.12 16 37 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 38 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 39 H 0.08 3.12 7.77 -2.39 -0.02 3.10 16 40 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.10 2.66 8.03 -2.39 -0.02 2.65 16 42 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -59.25 364.51 5.49 -53.76 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.95 Total: 28.11 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.26 Total: -4.17 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -1.75 Total: -75.30 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.00 Total: -44.33 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -59.25 5.49 -53.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264084064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.283 kcal (2) G-P(sol) polarization free energy of solvation -59.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds