Wall clock time and date at job start Tue Mar 31 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 119.99809 * 2 1 4 4 C 1.52995 * 109.47106 * 125.00019 * 3 2 1 5 5 O 1.42905 * 109.46957 * 180.02562 * 4 3 2 6 6 C 1.42902 * 114.00110 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.46905 * 329.99653 * 6 5 4 8 8 C 1.52999 * 109.47104 * 89.99746 * 6 5 4 9 9 C 1.50693 * 109.47063 * 209.99515 * 6 5 4 10 10 O 1.21277 * 120.00356 * 345.65730 * 9 6 5 11 11 N 1.34773 * 120.00000 * 165.65431 * 9 6 5 12 12 C 1.46506 * 120.00142 * 3.84155 * 11 9 6 13 13 C 1.50691 * 109.47394 * 94.84506 * 12 11 9 14 14 H 1.08002 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00279 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99596 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00115 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47172 * 60.00116 * 17 15 13 19 19 H 1.48501 * 109.46786 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47244 * 299.99990 * 17 15 13 21 21 C 1.46500 * 120.00204 * 183.83675 * 11 9 6 22 22 C 1.53003 * 109.47196 * 94.01191 * 21 11 9 23 23 C 1.52997 * 117.49856 * 243.93137 * 22 21 11 24 24 C 1.53000 * 117.49889 * 175.26819 * 22 21 11 25 25 H 1.07998 * 119.99741 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00389 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00434 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47012 * 4.99508 * 3 2 1 29 29 H 1.09002 * 109.46580 * 244.99818 * 3 2 1 30 30 H 1.08998 * 109.47602 * 59.99850 * 4 3 2 31 31 H 1.09002 * 109.47237 * 299.99397 * 4 3 2 32 32 H 1.09004 * 109.46933 * 302.78611 * 8 6 5 33 33 H 1.08999 * 109.47525 * 62.78546 * 8 6 5 34 34 H 1.08999 * 109.47220 * 182.78541 * 8 6 5 35 35 H 1.08995 * 109.47225 * 214.85469 * 12 11 9 36 36 H 1.09001 * 109.46797 * 334.84468 * 12 11 9 37 37 H 0.97001 * 120.00160 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47399 * 214.01323 * 21 11 9 39 39 H 1.08998 * 109.47313 * 334.01147 * 21 11 9 40 40 H 1.09002 * 115.54615 * 29.60107 * 22 21 11 41 41 H 1.09004 * 117.49842 * 359.97438 * 23 22 21 42 42 H 1.09002 * 117.49930 * 145.01910 * 23 22 21 43 43 H 1.08994 * 117.49614 * 214.97640 * 24 22 21 44 44 H 1.08999 * 117.49741 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7490 2.5711 1.1819 6 6 4.6877 2.7004 2.2516 7 1 4.3351 2.1356 3.1146 8 6 6.0465 2.1561 1.8064 9 6 4.8266 4.1537 2.6250 10 8 4.3998 5.0137 1.8840 11 7 5.4251 4.4978 3.7825 12 6 6.0153 3.4648 4.6374 13 6 7.4848 3.3367 4.3291 14 1 7.9343 3.9626 3.5724 15 6 8.2555 2.4206 5.0131 16 7 7.7080 1.6582 5.9342 17 14 10.0772 2.2625 4.6314 18 1 10.7512 3.5606 4.8876 19 1 10.6751 1.2144 5.4971 20 1 10.2534 1.8861 3.2057 21 6 5.4856 5.9049 4.1858 22 6 4.3022 6.2243 5.1015 23 6 3.2762 7.2427 4.6005 24 6 4.2464 7.6216 5.7223 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7399 0.5067 1.0921 31 1 2.4772 1.2358 2.1130 32 1 5.9363 1.1190 1.4893 33 1 6.4220 2.7523 0.9747 34 1 6.7493 2.2091 2.6378 35 1 5.8863 3.7416 5.6837 36 1 5.5204 2.5118 4.4501 37 1 8.2500 1.0134 6.4152 38 1 6.4181 6.0903 4.7191 39 1 5.4414 6.5389 3.3004 40 1 3.9339 5.3920 5.7013 41 1 3.4444 7.6854 3.6188 42 1 2.2327 7.0806 4.8710 43 1 3.8408 7.7086 6.7302 44 1 5.0525 8.3134 5.4780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264084068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:42 Heat of formation + Delta-G solvation = -46.260280 kcal Electronic energy + Delta-G solvation = -22664.626564 eV Core-core repulsion = 19390.379269 eV Total energy + Delta-G solvation = -3274.247295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49962 -37.71568 -36.70103 -34.98169 -34.79107 -32.54652 -31.10581 -28.87423 -27.66734 -26.45185 -23.59854 -22.98478 -22.49686 -22.05844 -20.34206 -19.88161 -18.48498 -16.87092 -16.52235 -16.09431 -15.80710 -15.58719 -14.79569 -14.67622 -14.40469 -14.22863 -13.71112 -13.49297 -13.17557 -12.79635 -12.49376 -12.31111 -11.94671 -11.76204 -11.53797 -11.37352 -11.29455 -11.24298 -11.19227 -10.98207 -10.92641 -10.73630 -10.54695 -10.25681 -10.11864 -9.78032 -9.56340 -9.45805 -9.36272 -8.79323 -8.55835 -7.73783 -6.25501 -4.31850 2.13626 3.20580 3.26009 3.28024 3.39375 3.50536 4.10010 4.25575 4.40301 4.92382 5.04612 5.07756 5.10219 5.21489 5.25228 5.27958 5.35307 5.45055 5.55791 5.58459 5.77975 5.78291 5.81531 5.86643 5.98662 6.04048 6.14081 6.15955 6.27219 6.37048 6.38807 6.46449 6.51404 6.60317 6.65600 6.76296 7.05258 7.15540 7.42770 7.61303 7.70212 7.98253 8.32337 8.73223 9.03336 9.34301 10.80477 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.005694 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.171081 B = 4915.890928 C = 6937.285688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C -0.093 4.093 4 C 0.065 3.935 5 O -0.367 6.367 6 C 0.081 3.919 7 H 0.081 0.919 8 C -0.186 4.186 9 C 0.521 3.479 10 O -0.554 6.554 11 N -0.592 5.592 12 C 0.233 3.767 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.151 3.849 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.179 4.179 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 -0.008 -4.280 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.167 4.167 3 C -0.130 4.130 4 C -0.012 4.012 5 O -0.285 6.285 6 C 0.021 3.979 7 H 0.099 0.901 8 C -0.243 4.243 9 C 0.308 3.692 10 O -0.433 6.433 11 N -0.324 5.324 12 C 0.113 3.887 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.027 3.973 22 C -0.179 4.179 23 C -0.214 4.214 24 C -0.217 4.217 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.881 0.424 -4.657 10.037 hybrid contribution 1.068 -0.572 0.231 1.233 sum -7.813 -0.148 -4.426 8.981 Atomic orbital electron populations 1.23865 0.95900 1.01863 1.01458 1.22860 0.96007 0.98201 0.99588 1.20643 0.97990 0.95565 0.98773 1.22434 0.93757 0.87128 0.97891 1.87952 1.54786 1.36633 1.49157 1.21864 0.91258 0.94568 0.90251 0.90123 1.22586 0.96869 0.99710 1.05157 1.20179 0.77738 0.90149 0.81138 1.90589 1.50070 1.51563 1.51029 1.48075 1.55286 1.08030 1.21005 1.19518 0.93235 0.85704 0.90206 1.21414 0.93597 1.20982 1.21572 0.91802 1.24942 0.98815 0.95290 0.94603 1.69908 1.36562 1.22530 1.23523 0.86599 0.84648 0.78009 0.78564 1.20031 1.21115 1.19908 1.20828 0.96255 0.82986 0.97210 1.22787 0.99836 0.92971 1.02318 1.22985 0.95659 1.04113 0.98665 1.22906 1.02600 0.98518 0.97669 0.88477 0.88484 0.87205 0.90671 0.90106 0.93183 0.93461 0.92913 0.92619 0.85844 0.94545 0.94316 0.92339 0.89940 0.90615 0.87854 0.88751 0.89527 0.89169 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 14.32 29.02 0.42 -1.42 16 2 C -0.15 -1.55 9.52 -36.02 -0.34 -1.90 16 3 C -0.09 -1.16 6.03 -27.88 -0.17 -1.32 16 4 C 0.06 0.95 5.73 37.15 0.21 1.17 16 5 O -0.37 -6.97 9.56 -54.72 -0.52 -7.50 16 6 C 0.08 1.60 2.30 -27.89 -0.06 1.54 16 7 H 0.08 1.53 6.41 -51.93 -0.33 1.19 16 8 C -0.19 -3.61 9.30 37.16 0.35 -3.26 16 9 C 0.52 11.43 7.00 -10.99 -0.08 11.36 16 10 O -0.55 -13.42 16.06 -13.93 -0.22 -13.64 16 11 N -0.59 -12.51 2.46 -175.06 -0.43 -12.94 16 12 C 0.23 5.32 4.70 -5.19 -0.02 5.30 16 13 C -0.54 -13.23 6.81 -34.44 -0.23 -13.46 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -23.34 13.29 55.43 0.74 -22.60 16 17 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.15 2.84 5.78 -4.04 -0.02 2.82 16 22 C -0.16 -2.64 6.01 -90.62 -0.54 -3.19 16 23 C -0.18 -2.62 10.18 -26.69 -0.27 -2.89 16 24 C -0.18 -2.43 10.26 -26.69 -0.27 -2.71 16 25 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 26 H 0.10 0.89 7.84 -52.49 -0.41 0.48 16 27 H 0.11 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.68 7.82 -51.93 -0.41 0.28 16 31 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.05 0.90 7.82 -51.93 -0.41 0.49 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.12 2.68 4.34 -51.93 -0.23 2.46 16 35 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 39 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 40 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -28.09 363.68 -8.58 -36.67 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.45 Total: 6.16 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.15 Total: -6.39 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.31 Total: -35.54 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.75 Total: -21.14 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.09 -8.58 -36.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264084068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.591 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds