Wall clock time and date at job start Tue Mar 31 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99750 * 2 1 4 4 N 1.46500 * 109.47045 * 123.20010 * 3 2 1 5 5 C 1.46502 * 120.00248 * 275.87189 * 4 3 2 6 6 C 1.50693 * 109.46978 * 270.00262 * 5 4 3 7 7 H 1.07992 * 120.00567 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00066 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99851 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00483 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47269 * 59.99553 * 10 8 6 12 12 H 1.48495 * 109.47500 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46959 * 299.99888 * 10 8 6 14 14 C 1.34775 * 119.99928 * 95.87121 * 4 3 2 15 15 O 1.21284 * 119.99871 * 184.20440 * 14 4 3 16 16 C 1.50694 * 120.00157 * 4.20312 * 14 4 3 17 17 C 1.53001 * 112.91075 * 289.50829 * 16 14 4 18 18 C 1.52995 * 109.46792 * 312.59707 * 17 16 14 19 19 O 1.42911 * 109.46965 * 185.18245 * 18 17 16 20 20 C 1.42897 * 113.99923 * 179.97438 * 19 18 17 21 21 C 1.53789 * 113.61316 * 60.76016 * 16 14 4 22 22 C 1.53779 * 87.07860 * 89.11557 * 21 16 14 23 23 C 1.53775 * 87.08612 * 25.43413 * 22 21 16 24 24 H 1.08004 * 119.99332 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.00177 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00515 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47016 * 3.20153 * 3 2 1 28 28 H 1.08999 * 109.47538 * 243.19910 * 3 2 1 29 29 H 1.09007 * 109.46954 * 29.99786 * 5 4 3 30 30 H 1.09003 * 109.47317 * 149.99584 * 5 4 3 31 31 H 0.96997 * 119.99863 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47168 * 72.59737 * 17 16 14 33 33 H 1.09000 * 109.46973 * 192.59278 * 17 16 14 34 34 H 1.08997 * 109.47359 * 305.17754 * 18 17 16 35 35 H 1.08995 * 109.47455 * 65.18318 * 18 17 16 36 36 H 1.08990 * 109.47386 * 299.99772 * 20 19 18 37 37 H 1.09000 * 109.47141 * 60.00269 * 20 19 18 38 38 H 1.08996 * 109.46797 * 179.97438 * 20 19 18 39 39 H 1.09000 * 113.61121 * 334.57150 * 21 16 14 40 40 H 1.08998 * 113.61531 * 203.66074 * 21 16 14 41 41 H 1.09000 * 113.61366 * 139.98262 * 22 21 16 42 42 H 1.09004 * 113.61912 * 270.88418 * 22 21 16 43 43 H 1.09006 * 113.61705 * 89.11090 * 23 22 21 44 44 H 1.09000 * 113.61917 * 219.93598 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9626 1.3500 1.1558 5 6 2.4570 1.7825 2.4609 6 6 2.6210 3.2746 2.5938 7 1 3.0585 3.8437 1.7870 8 6 2.2125 3.9132 3.7455 9 7 1.6792 3.2202 4.7279 10 14 2.4165 5.7626 3.9105 11 1 1.6537 6.4429 2.8332 12 1 1.9027 6.2013 5.2329 13 1 3.8548 6.1142 3.7964 14 6 4.2550 0.9932 1.0183 15 8 4.9806 0.9569 1.9895 16 6 4.7984 0.6394 -0.3420 17 6 4.2603 -0.6918 -0.8705 18 6 4.3655 -1.7551 0.2244 19 8 3.9764 -3.0242 -0.3051 20 6 4.0395 -4.0930 0.6413 21 6 4.7070 1.7886 -1.3598 22 6 6.0926 2.2338 -0.8632 23 6 6.3269 0.7718 -0.4482 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3565 2.1328 0.0574 28 1 2.6464 1.3883 -0.9172 29 1 1.4013 1.5241 2.5454 30 1 3.0176 1.2834 3.2514 31 1 1.3915 3.6695 5.5379 32 1 3.2168 -0.5719 -1.1617 33 1 4.8456 -1.0022 -1.7361 34 1 5.3943 -1.8099 0.5802 35 1 3.7083 -1.4901 1.0526 36 1 5.0617 -4.1961 1.0053 37 1 3.3758 -3.8766 1.4784 38 1 3.7287 -5.0213 0.1622 39 1 3.9142 2.5038 -1.1408 40 1 4.7018 1.4538 -2.3971 41 1 6.7541 2.5727 -1.6606 42 1 6.0535 2.9256 -0.0218 43 1 6.7645 0.1589 -1.2363 44 1 6.8430 0.6660 0.5060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293783047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:59 Heat of formation + Delta-G solvation = -38.949715 kcal Electronic energy + Delta-G solvation = -23777.217944 eV Core-core repulsion = 20503.287659 eV Total energy + Delta-G solvation = -3273.930285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64992 -37.72185 -37.06141 -35.69694 -33.18483 -32.02764 -31.70284 -27.98805 -26.78608 -25.75857 -25.40933 -24.67660 -23.18971 -21.67165 -20.49119 -19.64348 -17.75075 -16.62054 -16.39943 -16.24450 -15.82527 -15.55997 -15.00455 -14.85166 -14.49400 -14.33407 -13.95150 -13.49612 -13.44444 -12.71361 -12.38094 -12.33934 -12.28433 -11.98989 -11.70400 -11.50134 -11.23949 -11.16278 -11.08044 -10.97174 -10.86134 -10.66810 -10.56142 -10.20019 -10.09585 -9.96333 -9.63952 -9.59424 -9.10563 -8.81002 -8.43186 -7.67117 -6.04274 -4.09237 2.50576 3.31019 3.34603 3.35851 3.41502 3.72519 3.98766 4.43868 4.60958 4.75324 4.89569 4.99769 5.12994 5.24234 5.26773 5.29620 5.33140 5.37804 5.45643 5.52827 5.59846 5.61897 5.69011 5.75919 5.79024 5.92313 5.98723 6.06430 6.08498 6.11731 6.26485 6.31856 6.39719 6.57139 6.87765 6.97939 7.12316 7.17123 7.45457 7.56241 7.92322 8.23565 8.42911 8.89448 9.09254 9.55812 11.03780 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.005941 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.646360 B = 4711.705787 C = 5324.758165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.173 4.173 3 C 0.124 3.876 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.532 3.468 15 O -0.539 6.539 16 C -0.105 4.105 17 C -0.103 4.103 18 C 0.059 3.941 19 O -0.394 6.394 20 C 0.032 3.968 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.120 4.120 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -8.812 -13.549 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.192 4.192 3 C 0.000 4.000 4 N -0.318 5.318 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.318 3.682 15 O -0.417 6.417 16 C -0.109 4.109 17 C -0.140 4.140 18 C -0.018 4.018 19 O -0.314 6.314 20 C -0.065 4.065 21 C -0.168 4.168 22 C -0.177 4.177 23 C -0.158 4.158 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.200 -8.809 -12.990 16.018 hybrid contribution -0.012 0.957 0.572 1.115 sum 3.188 -7.853 -12.419 15.035 Atomic orbital electron populations 1.23819 0.95878 1.01653 1.00573 1.23581 0.96450 0.99274 0.99868 1.20880 0.93818 0.95223 0.90030 1.48125 1.07987 1.63839 1.11811 1.19262 0.94678 0.94860 0.78395 1.21384 1.40885 0.92485 1.01786 0.92529 1.24926 0.95084 0.98507 0.95497 1.69929 1.41388 1.35832 1.06162 0.86578 0.78565 0.85193 0.77205 1.20242 1.21182 1.20192 1.19603 0.82370 0.77350 0.88883 1.90653 1.57489 1.53344 1.40171 1.21983 0.98121 0.95729 0.95035 1.21636 1.03112 0.91421 0.97867 1.22594 0.99541 0.83031 0.96612 1.87805 1.88912 1.16943 1.37693 1.22709 1.00328 0.90196 0.93230 1.23112 0.98756 0.96889 0.98043 1.22816 0.96619 0.97112 1.01184 1.22875 0.93704 0.96705 1.02491 0.88848 0.88367 0.87169 0.89903 0.89444 0.94986 0.93959 0.92683 0.89716 0.90421 0.92917 0.92858 0.94165 0.93994 0.89855 0.90159 0.89355 0.91420 0.89681 0.89860 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.32 29.01 0.42 -2.10 16 2 C -0.17 -2.61 8.54 -36.02 -0.31 -2.92 16 3 C 0.12 2.07 4.87 -5.19 -0.03 2.04 16 4 N -0.59 -12.37 2.44 -176.43 -0.43 -12.80 16 5 C 0.25 6.47 5.21 -5.20 -0.03 6.45 16 6 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.53 10.93 4.90 -10.99 -0.05 10.88 16 15 O -0.54 -13.43 15.57 5.55 0.09 -13.34 16 16 C -0.11 -1.60 0.36 -154.84 -0.06 -1.66 16 17 C -0.10 -1.38 4.49 -26.73 -0.12 -1.50 16 18 C 0.06 0.87 4.82 37.15 0.18 1.05 16 19 O -0.39 -5.52 10.70 -35.23 -0.38 -5.90 16 20 C 0.03 0.36 11.01 101.05 1.11 1.47 16 21 C -0.13 -1.71 5.82 -25.92 -0.15 -1.86 16 22 C -0.14 -1.92 7.80 -25.92 -0.20 -2.13 16 23 C -0.12 -1.69 7.11 -25.92 -0.18 -1.87 16 24 H 0.09 1.13 8.06 -52.48 -0.42 0.71 16 25 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 26 H 0.11 1.66 5.53 -52.48 -0.29 1.37 16 27 H 0.08 1.43 7.76 -51.93 -0.40 1.03 16 28 H 0.09 1.24 3.64 -51.93 -0.19 1.05 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 1.26 7.37 -51.93 -0.38 0.88 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.08 1.11 4.41 -51.93 -0.23 0.88 16 33 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.14 6.41 -51.93 -0.33 0.81 16 40 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 44 H 0.08 1.33 7.37 -51.93 -0.38 0.94 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -32.28 349.21 -6.73 -39.01 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.15 Total: 2.50 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 0.16 Total: -5.63 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.31 Total: -38.69 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.29 Total: -19.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.28 -6.73 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293783047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.061 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds