Wall clock time and date at job start Tue Mar 31 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00473 * 2 1 4 4 N 1.46499 * 109.47344 * 127.14940 * 3 2 1 5 5 C 1.46508 * 119.99748 * 83.54192 * 4 3 2 6 6 C 1.50699 * 109.46992 * 90.00034 * 5 4 3 7 7 H 1.07999 * 119.99634 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99534 * 179.72932 * 6 5 4 9 9 N 1.31513 * 120.00492 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99473 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47430 * 59.99805 * 10 8 6 12 12 H 1.48504 * 109.46796 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47236 * 299.99524 * 10 8 6 14 14 C 1.34771 * 120.00453 * 263.54269 * 4 3 2 15 15 O 1.21285 * 120.00111 * 184.16303 * 14 4 3 16 16 C 1.50700 * 120.00192 * 4.16808 * 14 4 3 17 17 O 1.42904 * 110.01506 * 308.06152 * 16 14 4 18 18 C 1.42908 * 113.99657 * 305.03103 * 17 16 14 19 19 C 1.53000 * 109.46892 * 184.98674 * 18 17 16 20 20 C 1.54261 * 110.03548 * 186.67101 * 16 14 4 21 21 C 1.54964 * 104.16018 * 217.13603 * 20 16 14 22 22 C 1.54893 * 102.78000 * 37.88365 * 21 20 16 23 23 C 1.53876 * 110.03273 * 69.44714 * 16 14 4 24 24 H 1.08008 * 119.99994 * 356.04907 * 1 2 3 25 25 H 1.08002 * 120.00480 * 176.04413 * 1 2 3 26 26 H 1.08004 * 120.00426 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46581 * 7.16113 * 3 2 1 28 28 H 1.08988 * 109.47408 * 247.15883 * 3 2 1 29 29 H 1.09004 * 109.46604 * 330.00072 * 5 4 3 30 30 H 1.08998 * 109.47284 * 210.00054 * 5 4 3 31 31 H 0.96997 * 120.00333 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.46914 * 304.98744 * 18 17 16 33 33 H 1.08998 * 109.46825 * 64.98939 * 18 17 16 34 34 H 1.08994 * 109.47021 * 184.98225 * 19 18 17 35 35 H 1.08991 * 109.47159 * 304.98644 * 19 18 17 36 36 H 1.09004 * 109.46950 * 64.98871 * 19 18 17 37 37 H 1.09005 * 110.48474 * 335.77886 * 20 16 14 38 38 H 1.08993 * 110.49467 * 98.42154 * 20 16 14 39 39 H 1.09001 * 110.71867 * 279.57130 * 21 20 16 40 40 H 1.09004 * 110.76309 * 156.21994 * 21 20 16 41 41 H 1.08999 * 110.48897 * 203.40755 * 22 21 20 42 42 H 1.09002 * 110.48365 * 80.76414 * 22 21 20 43 43 H 1.08998 * 110.03396 * 238.57402 * 23 16 14 44 44 H 1.08992 * 110.03109 * 0.02562 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0301 1.3109 1.1009 5 6 4.3412 0.6804 0.9279 6 6 5.3205 1.6953 0.3969 7 1 4.9983 2.7085 0.2069 8 6 6.6288 1.3316 0.1585 9 7 7.0224 0.0992 0.3949 10 14 7.8429 2.5899 -0.4990 11 1 7.9533 3.7190 0.4592 12 1 9.1736 1.9526 -0.6677 13 1 7.3673 3.0984 -1.8106 14 6 2.7132 1.8962 2.2728 15 8 3.5394 1.9677 3.1579 16 6 1.3324 2.4617 2.4836 17 8 0.9951 3.3420 1.4096 18 6 1.9433 4.3900 1.1975 19 6 1.4229 5.3370 0.1144 20 6 1.2705 3.2185 3.8264 21 6 -0.1446 2.9039 4.3740 22 6 -0.3480 1.4232 3.9675 23 6 0.3035 1.3209 2.5729 24 1 -0.5400 0.9332 0.0644 25 1 -0.5401 -0.9330 -0.0645 26 1 1.8500 -0.9353 0.0004 27 1 1.3621 2.1296 0.1281 28 1 2.5906 1.4202 -0.9470 29 1 4.2564 -0.1464 0.2226 30 1 4.6929 0.3040 1.8884 31 1 7.9429 -0.1566 0.2275 32 1 2.0870 4.9432 2.1257 33 1 2.8935 3.9612 0.8793 34 1 2.1833 6.0849 -0.1102 35 1 1.1953 4.7681 -0.7869 36 1 0.5192 5.8329 0.4690 37 1 2.0348 2.8471 4.5091 38 1 1.3890 4.2901 3.6663 39 1 -0.8917 3.5407 3.9003 40 1 -0.1727 3.0142 5.4581 41 1 -1.4102 1.1856 3.9107 42 1 0.1547 0.7615 4.6729 43 1 -0.4534 1.4392 1.7976 44 1 0.8031 0.3583 2.4642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293996130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:24 Heat of formation + Delta-G solvation = -60.460451 kcal Electronic energy + Delta-G solvation = -24284.757958 eV Core-core repulsion = 21009.894897 eV Total energy + Delta-G solvation = -3274.863061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50958 -37.40455 -36.09020 -35.55277 -33.20436 -32.01159 -31.10801 -28.70720 -28.25787 -27.13390 -25.31932 -23.29387 -22.78211 -20.97383 -20.37294 -19.59638 -18.62790 -17.18524 -16.41645 -16.04151 -15.76392 -15.20925 -14.92981 -14.68331 -14.26307 -14.05864 -13.59359 -13.29359 -13.18049 -12.72304 -12.55287 -12.33854 -12.12305 -11.80247 -11.54882 -11.45489 -11.22250 -11.14629 -11.06801 -10.98772 -10.92330 -10.80383 -10.53728 -10.52086 -10.45115 -10.17515 -9.67306 -9.56299 -9.07804 -8.48376 -8.42900 -7.63706 -6.04129 -4.08763 2.51231 3.23569 3.31108 3.35493 3.38544 3.73079 4.04682 4.43902 4.63506 4.72433 4.99091 5.18445 5.21325 5.30381 5.32379 5.37156 5.48975 5.53314 5.57329 5.62136 5.73544 5.75048 5.85226 5.91840 5.94613 5.98004 6.07743 6.11709 6.16165 6.17778 6.24950 6.35213 6.44306 6.46631 6.89219 6.97276 7.09412 7.30096 7.44258 7.56983 7.91988 8.23726 8.43588 8.88421 9.06160 9.55990 11.03981 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.006193 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.051166 B = 4520.327229 C = 4787.226787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.105 3.895 4 N -0.583 5.583 5 C 0.244 3.756 6 C -0.524 4.524 7 H 0.055 0.945 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.488 3.512 15 O -0.535 6.535 16 C 0.100 3.900 17 O -0.364 6.364 18 C 0.041 3.959 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.111 4.111 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 4.813 1.605 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.174 4.174 3 C -0.018 4.018 4 N -0.313 5.313 5 C 0.125 3.875 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.274 3.726 15 O -0.413 6.413 16 C 0.058 3.942 17 O -0.284 6.284 18 C -0.035 4.035 19 C -0.202 4.202 20 C -0.179 4.179 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.148 4.148 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.009 4.694 1.930 16.794 hybrid contribution 1.151 0.520 -0.403 1.325 sum -14.858 5.214 1.527 15.820 Atomic orbital electron populations 1.23814 0.95782 1.01455 1.02658 1.23501 0.96105 0.99786 0.97999 1.21291 0.92523 0.96336 0.91606 1.48185 1.16976 1.54834 1.11296 1.19293 0.77258 0.92960 0.97974 1.21357 0.94564 0.96835 1.43502 0.92632 1.24922 0.98073 0.95420 0.95615 1.69918 1.17680 1.17262 1.48530 0.86588 0.80204 0.81503 0.79310 1.20221 1.21151 1.20222 1.20800 0.89075 0.79712 0.83060 1.90658 1.50208 1.57698 1.42704 1.22437 0.93092 0.90787 0.87902 1.87821 1.48585 1.40851 1.51100 1.22649 0.93066 0.89026 0.98729 1.21710 1.01478 0.98521 0.98523 1.22873 0.98383 1.00382 0.96242 1.22451 0.96593 0.96279 1.00277 1.22380 1.00361 0.96990 0.96396 1.22486 0.97392 0.96607 0.98326 0.88231 0.88949 0.87610 0.86880 0.89935 0.95025 0.94160 0.92682 0.92955 0.91799 0.91185 0.91720 0.92308 0.88754 0.90950 0.91398 0.91523 0.91327 0.91436 0.89198 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 11.98 29.02 0.35 -2.10 16 2 C -0.15 -2.35 8.43 -36.02 -0.30 -2.65 16 3 C 0.11 1.85 5.29 -5.19 -0.03 1.82 16 4 N -0.58 -12.57 2.32 -176.43 -0.41 -12.98 16 5 C 0.24 6.45 5.14 -5.19 -0.03 6.42 16 6 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 10 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.49 10.39 4.93 -10.99 -0.05 10.34 16 15 O -0.54 -13.60 15.01 5.55 0.08 -13.52 16 16 C 0.10 1.63 0.53 -90.66 -0.05 1.59 16 17 O -0.36 -5.56 7.04 -35.23 -0.25 -5.80 16 18 C 0.04 0.63 5.73 37.16 0.21 0.84 16 19 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 20 C -0.14 -2.12 5.73 -25.03 -0.14 -2.26 16 21 C -0.12 -1.39 6.91 -24.70 -0.17 -1.56 16 22 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 23 C -0.11 -1.53 4.06 -25.61 -0.10 -1.64 16 24 H 0.10 1.15 6.43 -52.48 -0.34 0.81 16 25 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 27 H 0.11 1.83 3.91 -51.95 -0.20 1.62 16 28 H 0.08 1.52 8.12 -51.94 -0.42 1.10 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.20 7.48 -51.93 -0.39 0.81 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.05 0.77 6.27 -51.93 -0.33 0.45 16 33 H 0.06 1.19 7.14 -51.93 -0.37 0.82 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.62 6.80 -51.93 -0.35 1.27 16 38 H 0.07 1.04 6.19 -51.93 -0.32 0.71 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.12 5.47 -51.93 -0.28 0.84 16 44 H 0.08 1.22 6.33 -51.93 -0.33 0.89 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -31.71 340.65 -7.36 -39.07 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.10 Total: 2.91 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.53 Total: -5.72 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.33 Total: -38.99 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.16 Total: -19.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.71 -7.36 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293996130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.393 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds