Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00154 * 2 1 4 4 C 1.53001 * 109.47166 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47227 * 64.99750 * 4 3 2 6 6 C 1.37092 * 119.99872 * 85.37654 * 5 4 3 7 7 H 1.08003 * 120.00362 * 214.36239 * 6 5 4 8 8 C 1.38959 * 120.00268 * 34.36252 * 6 5 4 9 9 N 1.31407 * 119.99679 * 22.50275 * 8 6 5 10 10 Si 1.86796 * 119.99954 * 202.50733 * 8 6 5 11 11 H 1.48503 * 109.46995 * 269.99760 * 10 8 6 12 12 H 1.48502 * 109.47500 * 29.99761 * 10 8 6 13 13 H 1.48501 * 109.47068 * 150.00053 * 10 8 6 14 14 C 1.34775 * 119.99934 * 265.38064 * 5 4 3 15 15 O 1.21290 * 119.99847 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99607 * 179.97438 * 14 5 4 17 17 H 1.08992 * 109.47650 * 299.99281 * 16 14 5 18 18 C 1.52998 * 109.47290 * 59.99754 * 16 14 5 19 19 C 1.53007 * 109.47142 * 120.00007 * 18 16 14 20 20 C 1.52998 * 109.47272 * 59.99966 * 19 18 16 21 21 C 1.53004 * 109.46786 * 299.99942 * 20 19 18 22 22 C 1.53001 * 109.47454 * 0.02562 * 21 20 19 23 23 C 1.53002 * 109.46726 * 299.99944 * 22 21 20 24 24 C 1.52998 * 109.47362 * 60.00031 * 23 22 21 25 25 H 1.09003 * 109.46824 * 300.00566 * 1 2 3 26 26 H 1.08998 * 109.46549 * 60.00060 * 1 2 3 27 27 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47477 * 59.99796 * 3 2 1 29 29 H 1.08999 * 109.47133 * 299.99582 * 3 2 1 30 30 H 1.08998 * 109.47203 * 305.00035 * 4 3 2 31 31 H 1.09005 * 109.47270 * 184.99516 * 4 3 2 32 32 H 0.97000 * 119.99839 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47061 * 239.99606 * 18 16 14 34 34 H 1.08996 * 109.47254 * 0.02562 * 18 16 14 35 35 H 1.08997 * 109.47096 * 180.02562 * 19 18 16 36 36 H 1.08994 * 109.47245 * 59.99847 * 20 19 18 37 37 H 1.08998 * 109.47143 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.46996 * 239.99639 * 21 20 19 39 39 H 1.09002 * 109.46884 * 120.00163 * 21 20 19 40 40 H 1.08990 * 109.46968 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47141 * 299.99636 * 23 22 21 42 42 H 1.08999 * 109.47089 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.47042 * 239.99811 * 24 23 22 44 44 H 1.09004 * 109.47352 * 119.99821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5638 -1.2509 6 6 4.1771 1.3361 -2.3657 7 1 3.9560 0.9383 -3.3451 8 6 4.6647 2.6308 -2.2356 9 7 5.3384 2.9743 -1.1609 10 14 4.3623 3.8830 -3.5883 11 1 5.4745 3.8286 -4.5708 12 1 3.0815 3.5728 -4.2729 13 1 4.2906 5.2432 -2.9967 14 6 4.1856 -0.7665 -1.3062 15 8 4.0087 -1.4497 -0.3198 16 6 4.6389 -1.4051 -2.5937 17 1 3.8968 -1.2226 -3.3709 18 6 5.9799 -0.8024 -3.0175 19 6 7.0349 -1.9079 -3.0926 20 6 6.6012 -2.9581 -4.1173 21 6 5.2603 -3.5607 -3.6935 22 6 4.7998 -2.9120 -2.3866 23 6 5.8415 -3.1677 -1.2956 24 6 7.1824 -2.5650 -1.7193 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9786 2.1765 0.0901 32 1 5.6790 3.8779 -1.0702 33 1 5.8745 -0.3336 -3.9959 34 1 6.2891 -0.0546 -2.2873 35 1 7.9903 -1.4785 -3.3941 36 1 6.4959 -2.4893 -5.0956 37 1 7.3527 -3.7458 -4.1705 38 1 5.3751 -4.6345 -3.5458 39 1 4.5181 -3.3782 -4.4706 40 1 3.8448 -3.3417 -2.0845 41 1 5.9563 -4.2414 -1.1474 42 1 5.5132 -2.7059 -0.3644 43 1 7.9341 -3.3525 -1.7724 44 1 7.4912 -1.8166 -0.9895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316507171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = -93.475800 kcal Electronic energy + Delta-G solvation = -24407.166481 eV Core-core repulsion = 21130.871767 eV Total energy + Delta-G solvation = -3276.294714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.24716 -37.91594 -36.70421 -34.68588 -31.55768 -30.90290 -30.66415 -30.21844 -28.59504 -25.73263 -24.85075 -23.02702 -22.01045 -21.59687 -20.94394 -18.97958 -17.15191 -16.14424 -15.83830 -15.80059 -15.56011 -15.21325 -14.95789 -14.58427 -14.29784 -14.15980 -13.48880 -13.02476 -12.38684 -12.02492 -11.93382 -11.62430 -11.59322 -11.51958 -11.40140 -11.34652 -11.27650 -11.21242 -11.08862 -11.01796 -10.61511 -10.45381 -10.31637 -10.13673 -9.92497 -9.49995 -9.22363 -9.18560 -9.06275 -8.94503 -7.96353 -7.39694 -6.33155 -3.98087 3.10348 3.21106 3.24725 4.05675 4.16521 4.56944 4.80420 5.02854 5.11142 5.24614 5.33016 5.68703 5.75231 5.77015 5.81905 5.89283 5.94653 5.94944 5.99123 6.01637 6.06379 6.14372 6.17061 6.20638 6.23404 6.27898 6.41925 6.43736 6.53623 6.67761 6.69396 6.81422 6.91884 6.98030 7.06648 7.12425 7.24824 7.28357 7.32613 7.51987 7.91832 8.01789 8.46050 9.15941 9.65889 10.12196 10.66961 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.008251 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.994962 B = 3392.686095 C = 4655.510081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.051 3.949 4 C 0.110 3.890 5 N -0.442 5.442 6 C -0.323 4.323 7 H 0.087 0.913 8 C 0.040 3.960 9 N -0.862 5.862 10 Si 0.905 3.095 11 H -0.277 1.277 12 H -0.271 1.271 13 H -0.283 1.283 14 C 0.487 3.513 15 O -0.587 6.587 16 C -0.078 4.078 17 H 0.074 0.926 18 C -0.088 4.088 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.062 4.062 23 C -0.121 4.121 24 C -0.109 4.109 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.268 0.732 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -5.043 -3.199 6.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.026 4.026 4 C -0.014 4.014 5 N -0.160 5.160 6 C -0.451 4.451 7 H 0.105 0.895 8 C -0.165 4.165 9 N -0.500 5.500 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.196 1.196 13 H -0.209 1.209 14 C 0.276 3.724 15 O -0.472 6.472 16 C -0.100 4.100 17 H 0.092 0.908 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.081 4.081 23 C -0.158 4.158 24 C -0.147 4.147 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.078 -5.346 -2.625 6.052 hybrid contribution -0.456 1.173 -0.835 1.511 sum -1.534 -4.172 -3.460 5.633 Atomic orbital electron populations 1.22613 0.83493 1.01556 0.98817 1.88130 1.17418 1.28283 1.95071 1.23089 0.96732 0.84150 0.98656 1.21558 0.89362 1.02392 0.88104 1.43272 1.57860 1.04905 1.09999 1.19344 1.42854 0.95857 0.87079 0.89538 1.25234 0.94717 0.99055 0.97481 1.69857 1.31385 1.19988 1.28780 0.86289 0.79133 0.80177 0.81268 1.20276 1.19560 1.20858 1.20280 0.79593 0.83142 0.89409 1.90438 1.56205 1.62719 1.37836 1.20911 0.98147 0.94112 0.96793 0.90817 1.21404 0.92614 0.96537 1.02058 1.21105 0.98625 0.95982 0.95068 1.21517 0.96897 0.97963 0.98343 1.21554 0.96920 0.98964 0.97538 1.20726 0.98741 0.94427 0.94218 1.21734 0.94070 0.99121 1.00895 1.21495 0.97425 0.99177 0.96593 0.95197 0.94990 0.90649 0.94604 0.93472 0.91861 0.86084 0.92168 0.92337 0.89823 0.92021 0.92512 0.92924 0.92670 0.92609 0.91573 0.93819 0.88590 0.93376 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.37 -8.06 10.08 -35.23 -0.36 -8.42 16 3 C 0.05 1.08 6.26 37.16 0.23 1.31 16 4 C 0.11 2.62 5.49 -4.04 -0.02 2.60 16 5 N -0.44 -10.90 2.47 -114.81 -0.28 -11.18 16 6 C -0.32 -7.90 6.95 -14.93 -0.10 -8.00 16 7 H 0.09 2.08 6.81 -52.48 -0.36 1.72 16 8 C 0.04 0.96 5.00 -17.47 -0.09 0.88 16 9 N -0.86 -21.84 11.25 55.50 0.62 -21.21 16 10 Si 0.90 18.99 29.61 -169.99 -5.03 13.95 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 14 C 0.49 11.77 6.23 -10.99 -0.07 11.70 16 15 O -0.59 -15.34 12.87 5.55 0.07 -15.26 16 16 C -0.08 -1.60 1.80 -91.80 -0.17 -1.77 16 17 H 0.07 1.50 7.65 -51.93 -0.40 1.11 16 18 C -0.09 -1.72 3.93 -26.73 -0.10 -1.83 16 19 C -0.09 -1.48 3.19 -90.64 -0.29 -1.77 16 20 C -0.11 -1.59 5.71 -26.73 -0.15 -1.74 16 21 C -0.11 -1.69 5.71 -26.73 -0.15 -1.84 16 22 C -0.06 -1.14 2.36 -90.64 -0.21 -1.35 16 23 C -0.12 -2.23 5.39 -26.73 -0.14 -2.37 16 24 C -0.11 -1.87 5.71 -26.75 -0.15 -2.02 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.59 7.29 -51.93 -0.38 1.21 16 31 H 0.12 3.00 5.32 -51.93 -0.28 2.72 16 32 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.93 6.80 -51.93 -0.35 1.57 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 2.09 5.51 -51.93 -0.29 1.80 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -27.63 332.10 -7.81 -35.44 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.52 Total: 6.24 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.31 Total: -4.56 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.34 Total: -32.39 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.28 Total: -23.68 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.63 -7.81 -35.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316507171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.037 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds