Wall clock time and date at job start Tue Mar 31 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99136 * 2 1 4 4 C 1.53003 * 109.46748 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47471 * 64.99948 * 4 3 2 6 6 C 1.37097 * 119.99862 * 270.00619 * 5 4 3 7 7 H 1.07995 * 119.99993 * 138.51915 * 6 5 4 8 8 C 1.38951 * 119.99680 * 318.51410 * 6 5 4 9 9 N 1.31413 * 120.00361 * 352.75101 * 8 6 5 10 10 Si 1.86806 * 119.99751 * 172.75299 * 8 6 5 11 11 H 1.48493 * 109.47148 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46846 * 119.99858 * 10 8 6 13 13 H 1.48497 * 109.46874 * 239.99508 * 10 8 6 14 14 C 1.34771 * 120.00007 * 89.99376 * 5 4 3 15 15 O 1.21293 * 119.99818 * 5.23255 * 14 5 4 16 16 C 1.50699 * 120.00172 * 185.22096 * 14 5 4 17 17 H 1.09004 * 109.46624 * 57.34927 * 16 14 5 18 18 C 1.53002 * 109.47327 * 297.35080 * 16 14 5 19 19 C 1.52993 * 109.47216 * 239.99596 * 18 16 14 20 20 C 1.53000 * 109.47183 * 59.99789 * 19 18 16 21 21 C 1.52992 * 109.47221 * 300.00282 * 20 19 18 22 22 C 1.52995 * 109.47367 * 359.97438 * 21 20 19 23 23 C 1.53001 * 109.46891 * 300.00113 * 22 21 20 24 24 C 1.52999 * 109.47467 * 300.00099 * 19 18 16 25 25 H 1.08999 * 109.47520 * 299.99537 * 1 2 3 26 26 H 1.08996 * 109.47466 * 60.00675 * 1 2 3 27 27 H 1.09008 * 109.46575 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47681 * 60.00450 * 3 2 1 29 29 H 1.09001 * 109.47037 * 299.99745 * 3 2 1 30 30 H 1.08998 * 109.47381 * 304.99711 * 4 3 2 31 31 H 1.08999 * 109.47297 * 184.99869 * 4 3 2 32 32 H 0.96993 * 120.00125 * 185.00738 * 9 8 6 33 33 H 1.08995 * 109.47194 * 359.97438 * 18 16 14 34 34 H 1.09005 * 109.47045 * 119.99732 * 18 16 14 35 35 H 1.09003 * 109.47361 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46889 * 59.99953 * 20 19 18 37 37 H 1.08998 * 109.47257 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.46899 * 239.99413 * 21 20 19 39 39 H 1.09009 * 109.47218 * 119.99673 * 21 20 19 40 40 H 1.09000 * 109.47546 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47304 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.47454 * 299.99893 * 23 22 21 43 43 H 1.08998 * 109.47331 * 179.97438 * 24 19 18 44 44 H 1.09005 * 109.47018 * 300.00001 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1849 -0.0006 5 7 3.9757 0.5647 -1.2527 6 6 4.0969 -0.7983 -1.3370 7 1 3.7629 -1.3163 -2.2237 8 6 4.6497 -1.5131 -0.2814 9 7 5.1855 -0.8753 0.7350 10 14 4.6311 -3.3809 -0.3071 11 1 3.9756 -3.8523 -1.5534 12 1 6.0251 -3.8905 -0.2583 13 1 3.8785 -3.8846 0.8698 14 6 4.2613 1.3340 -2.3218 15 8 4.2459 2.5426 -2.2207 16 6 4.6001 0.6926 -3.6427 17 1 3.7808 0.0437 -3.9523 18 6 5.8783 -0.1352 -3.4949 19 6 6.9462 0.4003 -4.4508 20 6 7.2441 1.8630 -4.1149 21 6 5.9659 2.6907 -4.2628 22 6 4.8160 1.7801 -4.6978 23 6 5.1602 1.1294 -6.0390 24 6 6.4380 0.3010 -5.8905 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.6885 1.8465 0.8899 29 1 1.6884 1.8464 -0.8900 30 1 3.8514 0.5685 0.8409 31 1 3.9783 2.1768 0.0889 32 1 5.6355 -1.3717 1.4363 33 1 6.2406 -0.0641 -2.4694 34 1 5.6661 -1.1772 -3.7342 35 1 7.8567 -0.1897 -4.3458 36 1 7.6061 1.9337 -3.0892 37 1 8.0052 2.2443 -4.7956 38 1 6.1197 3.4654 -5.0140 39 1 5.7209 3.1547 -3.3073 40 1 3.9055 2.3699 -4.8036 41 1 4.3408 0.4810 -6.3492 42 1 5.3141 1.9043 -6.7901 43 1 7.1986 0.6829 -6.5714 44 1 6.2257 -0.7411 -6.1298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316507172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:47 Heat of formation + Delta-G solvation = -92.947556 kcal Electronic energy + Delta-G solvation = -24365.948436 eV Core-core repulsion = 21089.676629 eV Total energy + Delta-G solvation = -3276.271807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29582 -37.94381 -36.74144 -34.65202 -31.48266 -30.94470 -30.70123 -30.24517 -28.60741 -25.76057 -24.69904 -23.05444 -22.04568 -21.63800 -20.97667 -19.00152 -17.15732 -16.22526 -15.88540 -15.84420 -15.44250 -15.23050 -14.94822 -14.58896 -14.23323 -14.11995 -13.53756 -13.09266 -12.43683 -12.07036 -11.89585 -11.64519 -11.57067 -11.54668 -11.40827 -11.37437 -11.34217 -11.17845 -11.04401 -10.87694 -10.69141 -10.55083 -10.29856 -9.98996 -9.93818 -9.56022 -9.25629 -9.20722 -8.99722 -8.90676 -8.07111 -7.30938 -6.17447 -3.95871 3.19639 3.29637 3.31847 3.97560 4.23695 4.57730 4.80436 5.06072 5.14975 5.21526 5.30431 5.70225 5.73889 5.75386 5.78537 5.85326 5.91215 5.91807 5.96712 6.01549 6.04120 6.10654 6.12063 6.16391 6.19550 6.28804 6.39619 6.44319 6.49383 6.63474 6.65879 6.77065 6.88299 6.89542 7.02451 7.07771 7.22818 7.28072 7.41940 7.66851 7.92443 8.16691 8.51656 9.22805 9.63171 10.04910 10.82743 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.007456 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.661224 B = 3754.464660 C = 4623.319407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.102 3.898 5 N -0.434 5.434 6 C -0.304 4.304 7 H 0.083 0.917 8 C 0.047 3.953 9 N -0.876 5.876 10 Si 0.914 3.086 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.479 3.521 15 O -0.604 6.604 16 C -0.077 4.077 17 H 0.075 0.925 18 C -0.088 4.088 19 C -0.090 4.090 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.063 4.063 23 C -0.112 4.112 24 C -0.110 4.110 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.266 0.734 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 0.951 -6.790 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.021 4.021 5 N -0.151 5.151 6 C -0.433 4.433 7 H 0.101 0.899 8 C -0.156 4.156 9 N -0.515 5.515 10 Si 0.742 3.258 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.269 3.731 15 O -0.491 6.491 16 C -0.099 4.099 17 H 0.093 0.907 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.147 4.147 21 C -0.160 4.160 22 C -0.082 4.082 23 C -0.150 4.150 24 C -0.147 4.147 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.080 1.293 -6.494 6.709 hybrid contribution -0.389 -0.859 0.089 0.947 sum -1.469 0.434 -6.406 6.586 Atomic orbital electron populations 1.22636 0.83756 1.01622 0.98676 1.88173 1.17041 1.27710 1.94965 1.23042 0.96977 0.84183 0.98074 1.21682 0.88785 0.99296 0.92377 1.43291 1.56560 1.06215 1.09026 1.19290 1.39273 0.80931 1.03771 0.89935 1.25288 0.95194 0.99543 0.95620 1.69591 1.35186 1.35656 1.11106 0.86059 0.77654 0.83656 0.78438 1.19412 1.20984 1.20785 1.20467 0.79263 0.86604 0.86775 1.90406 1.58090 1.14835 1.85807 1.20913 0.98845 0.96734 0.93370 0.90656 1.21385 0.93096 0.97808 1.00265 1.21120 0.98396 0.96414 0.94898 1.21496 0.97486 0.94986 1.00699 1.21771 0.93770 0.97038 1.03406 1.20754 0.98536 0.95742 0.93135 1.21553 0.97458 0.98780 0.97190 1.21519 0.97098 0.99515 0.96599 0.95278 0.95165 0.90521 0.94566 0.94790 0.85444 0.91455 0.92291 0.89935 0.92167 0.91947 0.92407 0.93359 0.93856 0.88341 0.91772 0.92575 0.92650 0.92898 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.84 10.18 -35.23 -0.36 -8.19 16 3 C 0.06 1.17 6.28 37.16 0.23 1.40 16 4 C 0.10 2.46 5.46 -4.04 -0.02 2.44 16 5 N -0.43 -10.73 2.49 -114.81 -0.29 -11.02 16 6 C -0.30 -7.58 6.37 -14.93 -0.10 -7.68 16 7 H 0.08 2.04 6.97 -52.49 -0.37 1.67 16 8 C 0.05 1.18 5.25 -17.47 -0.09 1.09 16 9 N -0.88 -23.03 10.92 55.50 0.61 -22.42 16 10 Si 0.91 20.03 29.56 -169.99 -5.03 15.00 16 11 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.48 11.38 6.52 -10.99 -0.07 11.31 16 15 O -0.60 -15.27 13.12 5.55 0.07 -15.20 16 16 C -0.08 -1.55 1.82 -91.75 -0.17 -1.72 16 17 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 18 C -0.09 -1.68 3.98 -26.73 -0.11 -1.79 16 19 C -0.09 -1.46 3.19 -90.62 -0.29 -1.75 16 20 C -0.11 -1.83 5.71 -26.74 -0.15 -1.98 16 21 C -0.12 -2.20 5.39 -26.74 -0.14 -2.35 16 22 C -0.06 -1.12 2.38 -90.60 -0.22 -1.33 16 23 C -0.11 -1.65 5.71 -26.73 -0.15 -1.80 16 24 C -0.11 -1.56 5.71 -26.73 -0.15 -1.71 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.13 3.32 5.25 -51.93 -0.27 3.05 16 31 H 0.07 1.64 7.36 -51.93 -0.38 1.26 16 32 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 33 H 0.08 1.86 6.82 -51.93 -0.35 1.51 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 2.09 5.42 -51.92 -0.28 1.81 16 40 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -27.79 332.31 -7.83 -35.62 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.53 Total: 5.46 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.31 Total: -4.25 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.32 Total: -33.44 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.29 Total: -23.39 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.79 -7.83 -35.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316507172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.328 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds