Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47292 * 2 1 4 4 C 1.46505 * 119.99841 * 83.01484 * 3 2 1 5 5 C 1.50705 * 109.46908 * 269.99740 * 4 3 2 6 6 H 1.08004 * 120.00046 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99929 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99829 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99962 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46968 * 60.00625 * 9 7 5 11 11 H 1.48496 * 109.47114 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47255 * 300.00682 * 9 7 5 13 13 C 1.34775 * 120.00010 * 263.01367 * 3 2 1 14 14 O 1.21287 * 119.99772 * 174.20467 * 13 3 2 15 15 C 1.50694 * 120.00296 * 354.20713 * 13 3 2 16 16 C 1.52994 * 109.54355 * 299.38815 * 15 13 3 17 17 C 1.52999 * 117.50062 * 1.17314 * 16 15 13 18 18 C 1.53002 * 117.49999 * 292.51531 * 16 15 13 19 19 C 1.53174 * 109.54726 * 179.11793 * 15 13 3 20 20 C 1.53093 * 109.16210 * 297.11609 * 19 15 13 21 21 O 1.42900 * 109.41619 * 302.38769 * 20 19 15 22 22 C 1.42901 * 114.09667 * 61.16044 * 21 20 19 23 23 C 1.53089 * 109.41487 * 298.83984 * 22 21 20 24 24 H 1.09001 * 109.47328 * 61.70921 * 1 2 3 25 25 H 1.08993 * 109.47604 * 181.71372 * 1 2 3 26 26 H 1.09006 * 109.46994 * 301.71671 * 1 2 3 27 27 H 1.08998 * 109.46999 * 240.00082 * 2 1 3 28 28 H 1.08997 * 109.47128 * 120.00116 * 2 1 3 29 29 H 1.08991 * 109.47084 * 150.00334 * 4 3 2 30 30 H 1.08992 * 109.47369 * 29.99263 * 4 3 2 31 31 H 0.97007 * 119.99420 * 179.97438 * 8 7 5 32 32 H 1.09002 * 115.55609 * 146.84694 * 16 15 13 33 33 H 1.09003 * 117.49500 * 0.02562 * 17 16 15 34 34 H 1.08999 * 117.50188 * 145.02178 * 17 16 15 35 35 H 1.08996 * 117.50425 * 214.97948 * 18 16 15 36 36 H 1.09003 * 117.49502 * 359.97438 * 18 16 15 37 37 H 1.09004 * 109.52053 * 57.01975 * 19 15 13 38 38 H 1.08998 * 109.52663 * 177.21004 * 19 15 13 39 39 H 1.09007 * 109.47820 * 182.40545 * 20 19 15 40 40 H 1.09002 * 109.48369 * 62.37558 * 20 19 15 41 41 H 1.09003 * 109.48172 * 178.86399 * 22 21 20 42 42 H 1.09000 * 109.49431 * 58.82839 * 22 21 20 43 43 H 1.09004 * 109.52634 * 297.70669 * 23 22 21 44 44 H 1.08999 * 109.57687 * 177.54270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1171 2.1232 1.2594 5 6 0.8213 2.8478 1.5183 6 1 0.0057 2.7637 0.8154 7 6 0.6766 3.6173 2.6532 8 7 1.6696 3.7194 3.5094 9 14 -0.9292 4.5161 2.9738 10 1 -2.0377 3.5320 3.0641 11 1 -0.8293 5.2681 4.2504 12 1 -1.1972 5.4629 1.8617 13 6 2.3769 1.9692 -1.1585 14 8 2.6807 3.1433 -1.1740 15 6 2.4002 1.1679 -2.4346 16 6 3.3960 0.0147 -2.2967 17 6 4.1269 -0.1317 -0.9605 18 6 4.8804 0.3715 -2.1943 19 6 2.8173 2.0711 -3.5993 20 6 1.7729 3.1762 -3.7773 21 8 0.4908 2.5864 -4.0021 22 6 0.0279 1.7688 -2.9254 23 6 1.0021 0.6072 -2.7131 24 1 -0.3634 0.4871 -0.9049 25 1 -0.3634 -1.0271 0.0307 26 1 -0.3633 0.5403 0.8742 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.9303 2.8458 1.1925 30 1 2.3143 1.4286 2.0758 31 1 1.5679 4.2611 4.3077 32 1 3.1338 -0.8993 -2.8296 33 1 3.8979 0.5935 -0.1796 34 1 4.3457 -1.1418 -0.6145 35 1 5.5946 -0.3079 -2.6595 36 1 5.1474 1.4278 -2.2256 37 1 3.7878 2.5184 -3.3839 38 1 2.8821 1.4806 -4.5131 39 1 2.0424 3.7968 -4.6319 40 1 1.7375 3.7913 -2.8780 41 1 -0.9598 1.3755 -3.1662 42 1 -0.0305 2.3652 -2.0148 43 1 1.0303 -0.0130 -3.6091 44 1 0.6749 0.0065 -1.8645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331421092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = -31.147522 kcal Electronic energy + Delta-G solvation = -24907.842564 eV Core-core repulsion = 21634.250607 eV Total energy + Delta-G solvation = -3273.591957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19451 -37.83031 -36.71257 -35.56408 -33.15737 -32.44669 -30.91229 -29.87183 -27.57367 -25.51703 -23.65384 -23.30697 -22.87177 -21.89266 -20.91163 -20.47026 -17.85548 -16.79258 -16.48895 -15.83948 -15.72371 -15.61092 -15.10540 -14.68817 -14.35620 -14.05863 -13.50983 -13.28436 -13.19968 -12.85635 -12.38852 -12.19971 -12.00092 -11.94573 -11.56869 -11.37482 -11.28775 -11.13047 -11.03421 -10.87027 -10.78307 -10.55322 -10.44914 -10.22856 -10.06109 -10.01809 -9.78495 -9.57039 -9.16594 -8.62132 -8.43345 -7.63322 -6.04687 -4.08454 3.30410 3.33790 3.35632 3.40739 3.78859 3.94084 4.16301 4.43559 4.60162 4.85557 4.91582 5.07896 5.13094 5.23679 5.29805 5.31217 5.37305 5.48320 5.56034 5.70862 5.75645 5.78311 5.83732 5.86090 5.89838 5.96685 6.06752 6.09223 6.13385 6.17205 6.24428 6.32904 6.34250 6.39241 6.46057 6.85048 7.05409 7.40113 7.49134 7.55090 7.91340 8.22944 8.41026 8.89371 9.07927 9.56160 11.03293 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.007082 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.985292 B = 3952.900898 C = 4445.819611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.518 3.482 14 O -0.536 6.536 15 C -0.050 4.050 16 C -0.144 4.144 17 C -0.190 4.190 18 C -0.178 4.178 19 C -0.121 4.121 20 C 0.048 3.952 21 O -0.388 6.388 22 C 0.057 3.943 23 C -0.174 4.174 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 -10.443 -11.708 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.027 4.027 3 N -0.322 5.322 4 C 0.127 3.873 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.304 3.696 14 O -0.414 6.414 15 C -0.053 4.053 16 C -0.163 4.163 17 C -0.227 4.227 18 C -0.215 4.215 19 C -0.159 4.159 20 C -0.029 4.029 21 O -0.307 6.307 22 C -0.020 4.020 23 C -0.211 4.211 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.612 -9.692 -11.661 15.248 hybrid contribution -0.718 0.346 0.559 0.974 sum 0.894 -9.346 -11.102 14.540 Atomic orbital electron populations 1.22583 0.96674 1.01273 1.04065 1.21814 0.94265 0.84162 1.02449 1.48272 1.62176 1.13233 1.08537 1.19269 0.98023 0.91490 0.78505 1.21368 0.99281 1.29063 1.06119 0.92413 1.24925 0.96722 0.96392 0.96069 1.69919 1.31259 1.40334 1.11935 0.86623 0.83705 0.79980 0.77511 1.20281 1.21234 1.20227 1.20070 0.77705 0.87266 0.84515 1.90624 1.49309 1.15902 1.85540 1.20426 0.95542 0.94731 0.94651 1.22198 0.92886 0.98976 1.02201 1.23643 1.03281 1.03478 0.92274 1.23023 0.93662 1.02215 1.02550 1.21947 1.00218 0.97185 0.96575 1.22853 0.82176 0.94864 1.02968 1.87827 1.35160 1.65678 1.42030 1.22578 0.96809 0.91498 0.91067 1.23035 0.93943 0.99643 1.04505 0.91907 0.92753 0.90070 0.89774 0.91246 0.94203 0.95074 0.92740 0.87262 0.86428 0.88849 0.89012 0.88677 0.90408 0.91253 0.89605 0.90146 0.89141 0.92363 0.90801 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 9.01 37.16 0.33 -2.49 16 2 C 0.10 1.51 3.97 -4.04 -0.02 1.49 16 3 N -0.59 -11.75 1.06 -175.06 -0.18 -11.93 16 4 C 0.25 6.17 5.10 -5.19 -0.03 6.15 16 5 C -0.52 -14.19 8.40 -34.44 -0.29 -14.48 16 6 H 0.06 1.57 7.42 -52.48 -0.39 1.18 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.52 10.25 3.88 -10.99 -0.04 10.20 16 14 O -0.54 -12.89 13.51 5.55 0.08 -12.81 16 15 C -0.05 -0.76 0.37 -155.48 -0.06 -0.82 16 16 C -0.14 -1.84 3.83 -90.62 -0.35 -2.18 16 17 C -0.19 -2.57 7.55 -26.70 -0.20 -2.77 16 18 C -0.18 -2.25 9.63 -26.69 -0.26 -2.50 16 19 C -0.12 -1.81 4.26 -26.59 -0.11 -1.92 16 20 C 0.05 0.78 6.55 37.21 0.24 1.03 16 21 O -0.39 -6.53 10.77 -35.23 -0.38 -6.91 16 22 C 0.06 0.89 5.57 37.20 0.21 1.10 16 23 C -0.17 -2.38 4.19 -26.59 -0.11 -2.50 16 24 H 0.06 0.92 4.60 -51.93 -0.24 0.68 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.48 6.93 -51.93 -0.36 1.12 16 27 H 0.08 1.11 3.26 -51.93 -0.17 0.94 16 28 H 0.07 1.05 7.99 -51.93 -0.42 0.63 16 29 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 30 H 0.03 0.80 7.96 -51.93 -0.41 0.38 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.11 1.16 8.06 -51.93 -0.42 0.74 16 33 H 0.12 2.00 5.06 -51.93 -0.26 1.74 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.36 7.20 -51.93 -0.37 0.98 16 37 H 0.08 1.19 6.90 -51.93 -0.36 0.83 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.59 5.84 -51.93 -0.30 1.29 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.09 7.17 -51.93 -0.37 0.72 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.11 1.46 2.37 -51.93 -0.12 1.34 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -31.09 320.80 -7.39 -38.48 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.68 Total: 5.21 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.77 Total: -8.09 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.55 Total: -37.43 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.30 Total: -19.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.09 -7.39 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331421092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.336 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds