Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20759 * 120.00139 * 2 1 4 4 C 1.50700 * 119.99707 * 180.02562 * 2 1 3 5 5 H 1.08993 * 112.91004 * 26.74084 * 4 2 1 6 6 C 1.53786 * 113.61132 * 255.48929 * 4 2 1 7 7 C 1.53781 * 87.17350 * 220.06314 * 6 4 2 8 8 H 1.08996 * 113.61580 * 270.76247 * 7 6 4 9 9 C 1.53003 * 113.61480 * 139.93948 * 7 6 4 10 10 C 1.50701 * 109.46707 * 84.50510 * 9 7 6 11 11 O 1.21275 * 120.00322 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99422 * 179.97438 * 10 9 7 13 13 C 1.46504 * 119.99655 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47234 * 35.00569 * 13 12 10 15 15 C 1.52994 * 109.47448 * 275.00170 * 13 12 10 16 16 C 1.50701 * 109.46788 * 155.00368 * 13 12 10 17 17 H 1.08002 * 120.00497 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99618 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00651 * 359.97438 * 18 16 13 20 20 Si 1.86809 * 119.99765 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.47001 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46764 * 119.99683 * 20 18 16 23 23 H 1.48503 * 109.46916 * 239.99300 * 20 18 16 24 24 C 1.53782 * 87.08260 * 25.39213 * 7 6 4 25 25 C 1.52996 * 113.61446 * 89.11378 * 24 7 6 26 26 C 1.52994 * 113.61734 * 220.02231 * 24 7 6 27 27 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46978 * 299.99634 * 1 2 3 29 29 H 1.08999 * 109.47581 * 59.99227 * 1 2 3 30 30 H 1.09002 * 113.61357 * 105.47231 * 6 4 2 31 31 H 1.09002 * 113.61608 * 334.65393 * 6 4 2 32 32 H 1.08996 * 109.47043 * 204.50856 * 9 7 6 33 33 H 1.09004 * 109.46782 * 324.50765 * 9 7 6 34 34 H 0.96999 * 120.00627 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.47229 * 300.00402 * 15 13 12 36 36 H 1.09004 * 109.47137 * 59.99500 * 15 13 12 37 37 H 1.08994 * 109.47320 * 180.02562 * 15 13 12 38 38 H 0.96999 * 120.00518 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47320 * 60.00623 * 25 24 7 40 40 H 1.08999 * 109.47324 * 180.02562 * 25 24 7 41 41 H 1.09006 * 109.47299 * 300.00236 * 25 24 7 42 42 H 1.08996 * 109.47659 * 59.99363 * 26 24 7 43 43 H 1.09003 * 109.47607 * 180.02562 * 26 24 7 44 44 H 1.09003 * 109.47085 * 299.99757 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.6961 -2.1206 -0.4527 6 6 2.8742 -1.6627 1.3634 7 6 4.1091 -2.1581 0.5924 8 1 4.0517 -3.2076 0.3039 9 6 5.4359 -1.7982 1.2639 10 6 5.7676 -2.8333 2.3077 11 8 5.0166 -3.7667 2.4963 12 7 6.8990 -2.7218 3.0316 13 6 7.2212 -3.7278 4.0467 14 1 6.8822 -4.7070 3.7083 15 6 6.5204 -3.3709 5.3590 16 6 8.7118 -3.7605 4.2660 17 1 9.3549 -3.0985 3.7051 18 6 9.2547 -4.6364 5.1821 19 7 8.4718 -5.4429 5.8648 20 14 11.1025 -4.6774 5.4534 21 1 11.7551 -3.6796 4.5683 22 1 11.4019 -4.3528 6.8713 23 1 11.6194 -6.0330 5.1362 24 6 3.7021 -1.1862 -0.5278 25 6 4.2967 0.2146 -0.3699 26 6 3.8908 -1.7583 -1.9341 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 2.3403 -2.4549 1.8882 31 1 3.0719 -0.7958 1.9940 32 1 6.2269 -1.7713 0.5145 33 1 5.3501 -0.8198 1.7369 34 1 7.4996 -1.9751 2.8811 35 1 6.8594 -2.3918 5.6974 36 1 5.4422 -3.3471 5.2004 37 1 6.7605 -4.1191 6.1143 38 1 8.8538 -6.0588 6.5095 39 1 5.3848 0.1501 -0.3748 40 1 3.9662 0.8448 -1.1955 41 1 3.9626 0.6470 0.5733 42 1 3.2830 -2.6562 -2.0457 43 1 3.5838 -1.0172 -2.6721 44 1 4.9406 -2.0090 -2.0865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331983931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = -70.846776 kcal Electronic energy + Delta-G solvation = -22619.822007 eV Core-core repulsion = 19344.508562 eV Total energy + Delta-G solvation = -3275.313445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15191 -38.86844 -37.75351 -34.72441 -32.35552 -31.43705 -31.03544 -29.74230 -28.39201 -27.40000 -25.24984 -24.62318 -22.55864 -21.14594 -19.68769 -19.18202 -18.19626 -17.08310 -16.23418 -15.77369 -15.30010 -15.21770 -15.13742 -14.85292 -14.17084 -14.06777 -13.71837 -13.36353 -13.01619 -12.76463 -12.56876 -12.43160 -12.25316 -12.22528 -12.08049 -11.77290 -11.63307 -11.48138 -11.08766 -10.95432 -10.90048 -10.86314 -10.68576 -10.37763 -10.26895 -10.22115 -9.94828 -9.13247 -9.01597 -8.87972 -8.52984 -7.84489 -6.10936 -4.19952 1.79067 3.24203 3.31960 3.34835 3.50273 3.89974 4.12324 4.29446 4.38812 4.56500 4.72457 4.80106 4.92605 5.14841 5.19132 5.21427 5.23369 5.38244 5.42519 5.51747 5.59544 5.64492 5.72131 5.82686 5.85722 5.90880 5.94265 6.00122 6.06045 6.09699 6.33721 6.41444 6.60405 6.85262 6.99578 7.18583 7.42505 7.51418 7.60616 7.72693 7.94845 8.17758 8.73463 8.81780 9.21031 9.48273 10.95058 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.003315 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.564169 B = 8444.471588 C = 8701.055973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.366 3.634 3 O -0.453 6.453 4 C -0.164 4.164 5 H 0.112 0.888 6 C -0.108 4.108 7 C -0.076 4.076 8 H 0.102 0.898 9 C -0.133 4.133 10 C 0.500 3.500 11 O -0.557 6.557 12 N -0.713 5.713 13 C 0.264 3.736 14 H 0.047 0.953 15 C -0.146 4.146 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.067 4.067 25 C -0.120 4.120 26 C -0.137 4.137 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.388 0.612 35 H 0.025 0.975 36 H 0.014 0.986 37 H 0.089 0.911 38 H 0.263 0.737 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 9.868 -12.947 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.242 3.758 3 O -0.327 6.327 4 C -0.183 4.183 5 H 0.130 0.870 6 C -0.145 4.145 7 C -0.095 4.095 8 H 0.121 0.879 9 C -0.173 4.173 10 C 0.285 3.715 11 O -0.436 6.436 12 N -0.360 5.360 13 C 0.162 3.838 14 H 0.065 0.935 15 C -0.205 4.205 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.067 4.067 25 C -0.176 4.176 26 C -0.194 4.194 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.220 0.780 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.673 9.591 -12.644 20.309 hybrid contribution 1.159 0.162 0.169 1.182 sum -11.514 9.752 -12.474 19.578 Atomic orbital electron populations 1.22311 0.95083 1.04502 1.04373 1.24463 0.91513 0.90138 0.69701 1.90412 1.71222 1.35334 1.35742 1.23404 0.96622 0.97375 1.00928 0.87032 1.22807 0.96781 1.01277 0.93641 1.22332 0.92863 0.99682 0.94596 0.87937 1.21687 0.98531 0.99115 0.97959 1.20500 0.81943 0.86661 0.82386 1.90626 1.49560 1.34230 1.69222 1.46552 1.21913 1.28921 1.38639 1.18707 0.94406 0.87325 0.83379 0.93481 1.22067 0.96139 1.00798 1.01481 1.21283 0.91198 1.21635 1.22970 0.92072 1.24897 0.98425 0.95066 0.95392 1.69915 1.34683 1.22393 1.25175 0.86406 0.84813 0.77947 0.78003 1.19738 1.20884 1.20893 1.21920 0.93083 0.96804 0.94941 1.21748 0.99152 0.93510 1.03236 1.21760 1.02177 1.00324 0.95160 0.90122 0.89247 0.89346 0.90174 0.90013 0.89371 0.89405 0.78026 0.95579 0.96706 0.89246 0.92672 0.93196 0.92565 0.91038 0.92451 0.92887 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.39 10.33 36.01 0.37 -1.02 16 2 C 0.37 3.62 6.66 -29.04 -0.19 3.43 16 3 O -0.45 -5.78 13.20 6.00 0.08 -5.70 16 4 C -0.16 -1.62 3.51 -90.86 -0.32 -1.94 16 5 H 0.11 0.91 7.95 -51.93 -0.41 0.49 16 6 C -0.11 -1.30 6.82 -25.92 -0.18 -1.48 16 7 C -0.08 -0.98 2.60 -89.80 -0.23 -1.21 16 8 H 0.10 1.46 7.74 -51.93 -0.40 1.06 16 9 C -0.13 -1.87 4.29 -27.88 -0.12 -1.99 16 10 C 0.50 9.79 7.79 -10.98 -0.09 9.71 16 11 O -0.56 -12.97 15.48 5.56 0.09 -12.88 16 12 N -0.71 -14.91 5.07 -54.93 -0.28 -15.19 16 13 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 14 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 15 C -0.15 -3.69 9.26 37.15 0.34 -3.35 16 16 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.07 -0.72 1.23 -153.61 -0.19 -0.91 16 25 C -0.12 -1.35 6.18 37.16 0.23 -1.12 16 26 C -0.14 -1.30 9.20 37.15 0.34 -0.96 16 27 H 0.08 0.42 7.99 -51.93 -0.41 0.00 16 28 H 0.09 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.03 7.40 -51.93 -0.38 0.64 16 32 H 0.09 1.11 7.99 -51.93 -0.41 0.69 16 33 H 0.09 1.13 7.22 -51.93 -0.37 0.75 16 34 H 0.39 7.06 8.54 -40.82 -0.35 6.71 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.05 0.53 7.30 -51.93 -0.38 0.15 16 40 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 41 H 0.07 0.89 5.67 -51.93 -0.29 0.60 16 42 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -31.40 350.29 -7.26 -38.66 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.43 Total: 5.69 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.60 Total: -7.12 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.35 Total: -39.67 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.40 -7.26 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331983931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.187 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds