Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20759 * 119.99910 * 2 1 4 4 C 1.50697 * 120.00164 * 179.97438 * 2 1 3 5 5 H 1.09002 * 112.84782 * 25.33635 * 4 2 1 6 6 C 1.53781 * 113.61630 * 254.13993 * 4 2 1 7 7 C 1.53781 * 87.08070 * 219.93625 * 6 4 2 8 8 H 1.09003 * 113.61469 * 270.88099 * 7 6 4 9 9 C 1.53001 * 113.61341 * 140.06609 * 7 6 4 10 10 C 1.50697 * 109.47279 * 84.50699 * 9 7 6 11 11 O 1.21280 * 119.99824 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00079 * 180.02562 * 10 9 7 13 13 C 1.46506 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47282 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47279 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00161 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00156 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99958 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00371 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47206 * 59.99436 * 19 17 15 21 21 H 1.48503 * 109.47665 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47073 * 299.99828 * 19 17 15 23 23 C 1.53786 * 113.61519 * 156.53045 * 4 2 1 24 24 C 1.52990 * 113.61464 * 254.61937 * 23 4 2 25 25 C 1.53001 * 113.61045 * 25.51827 * 23 4 2 26 26 H 1.09000 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47323 * 300.00440 * 1 2 3 28 28 H 1.09000 * 109.47228 * 60.00343 * 1 2 3 29 29 H 1.08999 * 113.61567 * 334.48200 * 6 4 2 30 30 H 1.08998 * 113.61196 * 105.38554 * 6 4 2 31 31 H 1.09002 * 109.46996 * 204.50089 * 9 7 6 32 32 H 1.08995 * 109.47427 * 324.50022 * 9 7 6 33 33 H 0.97000 * 120.00422 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.46812 * 299.99656 * 13 12 10 35 35 H 1.08997 * 109.46818 * 59.99674 * 13 12 10 36 36 H 1.08998 * 109.46735 * 300.00068 * 14 13 12 37 37 H 1.09000 * 109.46992 * 59.99467 * 14 13 12 38 38 H 0.97007 * 119.99928 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.47525 * 79.50227 * 24 23 4 40 40 H 1.09000 * 109.47186 * 199.50512 * 24 23 4 41 41 H 1.09004 * 109.47366 * 319.49956 * 24 23 4 42 42 H 1.09004 * 109.47460 * 40.49505 * 25 23 4 43 43 H 1.08998 * 109.46938 * 160.49579 * 25 23 4 44 44 H 1.08995 * 109.47558 * 280.49569 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6859 -2.1257 -0.4289 6 6 2.9020 -1.6454 1.3561 7 6 4.1185 -2.1531 0.5641 8 1 4.0519 -3.2056 0.2887 9 6 5.4606 -1.7898 1.2026 10 6 5.8121 -2.8144 2.2504 11 8 5.0627 -3.7433 2.4656 12 7 6.9587 -2.6977 2.9490 13 6 7.3001 -3.6935 3.9680 14 6 8.6422 -3.3303 4.6065 15 6 8.9937 -4.3548 5.6542 16 1 8.3264 -5.1821 5.8459 17 6 10.1668 -4.2356 6.3688 18 7 10.9792 -3.2280 6.1358 19 14 10.6022 -5.5052 7.6681 20 1 10.7014 -6.8456 7.0367 21 1 11.9049 -5.1528 8.2877 22 1 9.5466 -5.5268 8.7124 23 6 3.6879 -1.1925 -0.5606 24 6 3.8425 -1.7807 -1.9645 25 6 4.2879 0.2091 -0.4327 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.1151 -0.7705 1.9703 30 1 2.3782 -2.4299 1.9023 31 1 6.2352 -1.7738 0.4359 32 1 5.3880 -0.8061 1.6663 33 1 7.5579 -1.9546 2.7772 34 1 6.5252 -3.7093 4.7345 35 1 7.3730 -4.6773 3.5045 36 1 9.4168 -3.3147 3.8398 37 1 8.5698 -2.3463 5.0698 38 1 11.8047 -3.1443 6.6384 39 1 3.4692 -1.0683 -2.7001 40 1 4.8954 -1.9853 -2.1587 41 1 3.2733 -2.7077 -2.0348 42 1 4.0207 0.6318 0.5358 43 1 5.3730 0.1487 -0.5159 44 1 3.8975 0.8454 -1.2269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332065604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -78.402928 kcal Electronic energy + Delta-G solvation = -22013.326530 eV Core-core repulsion = 18737.685426 eV Total energy + Delta-G solvation = -3275.641105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28758 -39.16957 -37.92279 -34.80868 -32.83551 -31.55360 -31.29783 -30.01626 -29.05467 -27.52046 -25.35282 -24.11621 -22.62171 -21.03505 -20.31815 -19.42494 -18.35977 -16.80286 -16.38370 -16.24048 -15.48255 -15.38066 -15.27849 -14.84746 -14.56108 -14.39709 -13.96504 -13.49295 -13.45569 -13.03510 -12.84596 -12.62635 -12.50752 -12.31931 -12.28817 -12.10600 -11.87481 -11.63090 -11.20704 -11.06068 -11.04316 -10.99229 -10.66934 -10.53808 -10.30767 -10.10781 -9.76781 -9.43416 -9.26103 -9.11944 -8.51926 -8.32902 -6.09066 -4.12053 1.70048 3.07888 3.31090 3.34925 3.37826 3.68531 3.85877 4.16179 4.35225 4.42993 4.57407 4.62070 4.83556 5.04209 5.06057 5.11969 5.17821 5.27660 5.27777 5.30199 5.45332 5.53081 5.56823 5.61323 5.66859 5.74551 5.79444 5.85595 5.92314 5.95597 6.18857 6.25911 6.36455 6.37669 6.45658 6.75392 6.96757 7.33340 7.52381 7.62547 7.89128 8.06896 8.28654 8.71489 8.93919 9.52715 11.02495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036794 B = 0.002683 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.814979 B =10434.342877 C =10528.583977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.365 3.635 3 O -0.452 6.452 4 C -0.163 4.163 5 H 0.112 0.888 6 C -0.109 4.109 7 C -0.078 4.078 8 H 0.103 0.897 9 C -0.133 4.133 10 C 0.504 3.496 11 O -0.552 6.552 12 N -0.725 5.725 13 C 0.122 3.878 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.067 4.067 24 C -0.137 4.137 25 C -0.119 4.119 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.946 6.868 -15.934 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.241 3.759 3 O -0.326 6.326 4 C -0.182 4.182 5 H 0.130 0.870 6 C -0.146 4.146 7 C -0.097 4.097 8 H 0.121 0.879 9 C -0.173 4.173 10 C 0.290 3.710 11 O -0.431 6.431 12 N -0.375 5.375 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.067 4.067 24 C -0.194 4.194 25 C -0.176 4.176 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.230 0.770 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.978 6.824 -15.702 24.826 hybrid contribution 0.528 -0.412 0.671 0.948 sum -17.450 6.412 -15.030 23.906 Atomic orbital electron populations 1.22310 0.95012 1.04503 1.04447 1.24454 0.91551 0.90091 0.69823 1.90421 1.71273 1.35286 1.35605 1.23360 0.96640 0.97532 1.00709 0.87012 1.22824 0.96591 1.01358 0.93858 1.22410 0.92612 0.99842 0.94809 0.87901 1.21680 0.98719 0.99051 0.97808 1.20628 0.81377 0.86593 0.82397 1.90648 1.50189 1.34234 1.68031 1.46375 1.22014 1.29751 1.39361 1.21689 0.99393 0.90321 0.88660 1.19314 0.89774 0.97654 0.95731 1.21021 1.05440 1.10011 1.19631 0.92335 1.24999 0.96228 0.95767 0.97302 1.69950 1.11811 1.30086 1.41491 0.86571 0.77607 0.81682 0.81663 1.20110 1.21231 1.20108 1.21931 0.93212 0.96775 0.94796 1.21754 1.02206 1.00326 0.95156 1.21726 0.99098 0.93467 1.03339 0.90135 0.89212 0.89292 0.89874 0.90160 0.88938 0.88920 0.76956 0.92718 0.92709 0.95986 0.95986 0.92786 0.92764 0.92045 0.92410 0.91187 0.93150 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.20 10.33 36.00 0.37 -0.83 16 2 C 0.36 3.22 6.66 -29.04 -0.19 3.03 16 3 O -0.45 -5.32 13.22 6.00 0.08 -5.24 16 4 C -0.16 -1.39 3.50 -90.96 -0.32 -1.70 16 5 H 0.11 0.76 7.97 -51.93 -0.41 0.34 16 6 C -0.11 -1.13 6.83 -25.92 -0.18 -1.30 16 7 C -0.08 -0.85 2.60 -89.67 -0.23 -1.08 16 8 H 0.10 1.24 7.74 -51.93 -0.40 0.84 16 9 C -0.13 -1.55 4.36 -27.88 -0.12 -1.67 16 10 C 0.50 8.27 7.83 -10.99 -0.09 8.18 16 11 O -0.55 -10.95 15.82 5.56 0.09 -10.86 16 12 N -0.73 -12.59 5.56 -60.29 -0.33 -12.93 16 13 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.07 -0.62 1.23 -153.56 -0.19 -0.81 16 24 C -0.14 -1.11 9.18 37.15 0.34 -0.77 16 25 C -0.12 -1.19 6.15 37.16 0.23 -0.97 16 26 H 0.08 0.34 7.97 -51.93 -0.41 -0.08 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.91 7.37 -51.93 -0.38 0.52 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 32 H 0.09 0.99 7.16 -51.93 -0.37 0.62 16 33 H 0.40 5.98 8.47 -40.82 -0.35 5.64 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.43 8.01 -51.93 -0.42 0.01 16 42 H 0.07 0.78 5.72 -51.93 -0.30 0.49 16 43 H 0.05 0.46 7.49 -51.93 -0.39 0.07 16 44 H 0.06 0.62 7.30 -51.93 -0.38 0.24 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -32.32 355.25 -7.63 -39.95 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.57 Total: 1.33 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.95 Total: -8.51 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.40 Total: -38.46 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.17 Total: -16.10 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.32 -7.63 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332065604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.454 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds