Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20759 * 119.99910 * 2 1 4 4 C 1.50697 * 120.00164 * 179.97438 * 2 1 3 5 5 H 1.09002 * 112.84782 * 25.33635 * 4 2 1 6 6 C 1.53781 * 113.61630 * 254.13993 * 4 2 1 7 7 C 1.53781 * 87.08070 * 219.93625 * 6 4 2 8 8 H 1.09003 * 113.61469 * 270.88099 * 7 6 4 9 9 C 1.53001 * 113.61341 * 140.06609 * 7 6 4 10 10 C 1.50697 * 109.47279 * 84.50699 * 9 7 6 11 11 O 1.21280 * 119.99824 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00079 * 180.02562 * 10 9 7 13 13 C 1.46506 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47282 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47279 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00161 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00156 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99958 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00371 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47206 * 59.99436 * 19 17 15 21 21 H 1.48503 * 109.47665 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47073 * 299.99828 * 19 17 15 23 23 C 1.53786 * 113.61519 * 156.53045 * 4 2 1 24 24 C 1.52990 * 113.61464 * 254.61937 * 23 4 2 25 25 C 1.53001 * 113.61045 * 25.51827 * 23 4 2 26 26 H 1.09000 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47323 * 300.00440 * 1 2 3 28 28 H 1.09000 * 109.47228 * 60.00343 * 1 2 3 29 29 H 1.08999 * 113.61567 * 334.48200 * 6 4 2 30 30 H 1.08998 * 113.61196 * 105.38554 * 6 4 2 31 31 H 1.09002 * 109.46996 * 204.50089 * 9 7 6 32 32 H 1.08995 * 109.47427 * 324.50022 * 9 7 6 33 33 H 0.97000 * 120.00422 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.46812 * 299.99656 * 13 12 10 35 35 H 1.08997 * 109.46818 * 59.99674 * 13 12 10 36 36 H 1.08998 * 109.46735 * 300.00068 * 14 13 12 37 37 H 1.09000 * 109.46992 * 59.99467 * 14 13 12 38 38 H 0.97007 * 119.99928 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.47525 * 79.50227 * 24 23 4 40 40 H 1.09000 * 109.47186 * 199.50512 * 24 23 4 41 41 H 1.09004 * 109.47366 * 319.49956 * 24 23 4 42 42 H 1.09004 * 109.47460 * 40.49505 * 25 23 4 43 43 H 1.08998 * 109.46938 * 160.49579 * 25 23 4 44 44 H 1.08995 * 109.47558 * 280.49569 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6859 -2.1257 -0.4289 6 6 2.9020 -1.6454 1.3561 7 6 4.1185 -2.1531 0.5641 8 1 4.0519 -3.2056 0.2887 9 6 5.4606 -1.7898 1.2026 10 6 5.8121 -2.8144 2.2504 11 8 5.0627 -3.7433 2.4656 12 7 6.9587 -2.6977 2.9490 13 6 7.3001 -3.6935 3.9680 14 6 8.6422 -3.3303 4.6065 15 6 8.9937 -4.3548 5.6542 16 1 8.3264 -5.1821 5.8459 17 6 10.1668 -4.2356 6.3688 18 7 10.9792 -3.2280 6.1358 19 14 10.6022 -5.5052 7.6681 20 1 10.7014 -6.8456 7.0367 21 1 11.9049 -5.1528 8.2877 22 1 9.5466 -5.5268 8.7124 23 6 3.6879 -1.1925 -0.5606 24 6 3.8425 -1.7807 -1.9645 25 6 4.2879 0.2091 -0.4327 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.1151 -0.7705 1.9703 30 1 2.3782 -2.4299 1.9023 31 1 6.2352 -1.7738 0.4359 32 1 5.3880 -0.8061 1.6663 33 1 7.5579 -1.9546 2.7772 34 1 6.5252 -3.7093 4.7345 35 1 7.3730 -4.6773 3.5045 36 1 9.4168 -3.3147 3.8398 37 1 8.5698 -2.3463 5.0698 38 1 11.8047 -3.1443 6.6384 39 1 3.4692 -1.0683 -2.7001 40 1 4.8954 -1.9853 -2.1587 41 1 3.2733 -2.7077 -2.0348 42 1 4.0207 0.6318 0.5358 43 1 5.3730 0.1487 -0.5159 44 1 3.8975 0.8454 -1.2269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332065604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -97.981588 kcal Electronic energy + Delta-G solvation = -22014.175525 eV Core-core repulsion = 18737.685426 eV Total energy + Delta-G solvation = -3276.490099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.09044 -40.45726 -38.80404 -36.54148 -34.79755 -32.53073 -32.13841 -31.29450 -30.18619 -28.24910 -26.93958 -25.34762 -23.50845 -22.82982 -21.56786 -20.30867 -19.17874 -18.57164 -17.88900 -17.13034 -16.64609 -16.55473 -16.45195 -16.11628 -15.93706 -15.53945 -15.00084 -14.73969 -14.37766 -14.18497 -14.14708 -13.63146 -13.48802 -13.22728 -13.16042 -13.11398 -12.95921 -12.86958 -12.59619 -12.54518 -12.35725 -12.21675 -11.89867 -11.80572 -11.67063 -11.48158 -11.32644 -10.94994 -10.65146 -10.60814 -9.98833 -9.94236 -8.24858 -6.35714 1.01832 1.41041 1.43417 1.51482 1.74011 2.30058 2.47667 3.09664 3.19173 3.39354 3.53642 3.77654 3.86171 4.01212 4.31635 4.32766 4.37525 4.46928 4.50950 4.55836 4.60327 4.66164 4.68276 4.70583 4.85208 4.86038 4.86571 4.97471 4.99270 5.07073 5.18048 5.20469 5.26712 5.31279 5.38000 5.50524 5.51117 5.57674 5.66355 5.78566 6.15753 6.67253 6.69098 6.77697 7.33723 7.35221 8.86787 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036794 B = 0.002683 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.814979 B =10434.342877 C =10528.583977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.364 3.636 3 O -0.486 6.486 4 C -0.156 4.156 5 H 0.134 0.866 6 C -0.113 4.113 7 C -0.082 4.082 8 H 0.093 0.907 9 C -0.122 4.122 10 C 0.504 3.496 11 O -0.587 6.587 12 N -0.723 5.723 13 C 0.141 3.859 14 C 0.023 3.977 15 C -0.549 4.549 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.061 4.061 24 C -0.136 4.136 25 C -0.115 4.115 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.409 0.591 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.266 0.734 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.881 6.549 -16.712 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.243 3.757 3 O -0.362 6.362 4 C -0.175 4.175 5 H 0.152 0.848 6 C -0.150 4.150 7 C -0.100 4.100 8 H 0.111 0.889 9 C -0.162 4.162 10 C 0.292 3.708 11 O -0.467 6.467 12 N -0.374 5.374 13 C 0.017 3.983 14 C -0.015 4.015 15 C -0.587 4.587 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.567 5.567 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.061 4.061 24 C -0.193 4.193 25 C -0.172 4.172 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.926 6.518 -16.501 25.941 hybrid contribution 0.801 -0.293 0.901 1.241 sum -18.124 6.225 -15.600 24.710 Atomic orbital electron populations 1.22321 0.92495 1.06089 1.05004 1.24857 0.92985 0.89472 0.68416 1.90420 1.72223 1.36303 1.37263 1.23398 0.96594 0.98279 0.99207 0.84799 1.22787 0.96839 1.00770 0.94652 1.22416 0.92170 0.99712 0.95739 0.88861 1.21710 0.99929 0.97769 0.96775 1.21422 0.80131 0.86823 0.82383 1.90632 1.51072 1.35955 1.69076 1.46242 1.22968 1.29419 1.38790 1.21170 0.97105 0.90847 0.89153 1.19125 0.91126 0.96316 0.94896 1.21454 1.05892 1.10727 1.20638 0.92333 1.25888 0.96061 0.97810 0.99466 1.70057 1.12261 1.31735 1.42600 0.85497 0.77555 0.79124 0.78873 1.19275 1.20548 1.19323 1.21870 0.93491 0.95779 0.95006 1.21749 1.02516 1.00778 0.94245 1.21661 0.99551 0.93714 1.02308 0.88118 0.88932 0.88273 0.90737 0.90850 0.86740 0.87571 0.75505 0.93846 0.93721 0.97382 0.97479 0.92514 0.92190 0.91989 0.91535 0.92585 0.92423 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 10.33 71.23 0.74 -1.17 16 2 C 0.36 5.89 6.66 29.10 0.19 6.08 16 3 O -0.49 -11.10 13.22 -1.45 -0.02 -11.11 16 4 C -0.16 -2.37 3.50 -11.01 -0.04 -2.41 16 5 H 0.13 1.44 7.97 -2.39 -0.02 1.42 16 6 C -0.11 -2.25 6.83 31.12 0.21 -2.03 16 7 C -0.08 -1.68 2.60 -10.18 -0.03 -1.70 16 8 H 0.09 2.14 7.74 -2.39 -0.02 2.12 16 9 C -0.12 -2.70 4.36 29.85 0.13 -2.57 16 10 C 0.50 16.26 7.83 87.66 0.69 16.95 16 11 O -0.59 -23.24 15.82 -3.03 -0.05 -23.29 16 12 N -0.72 -24.98 5.56 -463.06 -2.57 -27.56 16 13 C 0.14 6.14 5.61 86.38 0.48 6.62 16 14 C 0.02 1.16 5.09 29.85 0.15 1.31 16 15 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 16 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 17 C 0.01 0.37 5.46 84.65 0.46 0.83 16 18 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 19 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 C -0.06 -1.03 1.23 -51.56 -0.06 -1.09 16 24 C -0.14 -1.89 9.18 71.98 0.66 -1.23 16 25 C -0.12 -2.17 6.15 71.98 0.44 -1.73 16 26 H 0.10 0.54 7.97 -2.39 -0.02 0.52 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.60 7.37 -2.39 -0.02 1.58 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 2.07 8.03 -2.39 -0.02 2.05 16 32 H 0.11 2.11 7.16 -2.39 -0.02 2.10 16 33 H 0.41 12.13 8.47 -92.71 -0.79 11.35 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.81 8.01 -2.38 -0.02 0.80 16 42 H 0.06 1.22 5.72 -2.39 -0.01 1.20 16 43 H 0.06 0.97 7.49 -2.39 -0.02 0.95 16 44 H 0.05 1.06 7.30 -2.39 -0.02 1.04 16 Total: -1.00 -69.56 355.25 4.13 -65.44 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.19 Total: 18.03 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.27 Total: -12.85 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -2.29 Total: -82.02 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.07 Total: -34.41 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.56 4.13 -65.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332065604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.545 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds