Wall clock time and date at job start Tue Mar 31 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20754 * 120.00230 * 2 1 4 4 C 1.50710 * 120.00067 * 180.02562 * 2 1 3 5 5 H 1.09001 * 112.90582 * 23.74190 * 4 2 1 6 6 C 1.54048 * 113.69270 * 252.42100 * 4 2 1 7 7 C 1.53782 * 87.07528 * 220.05000 * 6 4 2 8 8 H 1.09002 * 113.61607 * 270.88086 * 7 6 4 9 9 C 1.53002 * 113.69373 * 139.98804 * 7 6 4 10 10 C 1.50693 * 109.46974 * 87.46351 * 9 7 6 11 11 O 1.21284 * 120.00227 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00184 * 180.02562 * 10 9 7 13 13 C 1.46508 * 119.99564 * 359.97438 * 12 10 9 14 14 C 1.46492 * 120.00400 * 180.02562 * 12 10 9 15 15 C 1.50708 * 109.47416 * 89.99993 * 14 12 10 16 16 H 1.07999 * 119.99739 * 0.02562 * 15 14 12 17 17 C 1.37870 * 120.00265 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99947 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00102 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46916 * 59.99605 * 19 17 15 21 21 H 1.48496 * 109.47279 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46896 * 299.99760 * 19 17 15 23 23 C 1.53781 * 113.61390 * 154.99324 * 4 2 1 24 24 C 1.52997 * 113.61512 * 25.43443 * 23 4 2 25 25 C 1.52999 * 113.61163 * 254.61244 * 23 4 2 26 26 H 1.09005 * 109.47122 * 269.99391 * 1 2 3 27 27 H 1.08998 * 109.47349 * 29.99214 * 1 2 3 28 28 H 1.09001 * 109.47647 * 149.99675 * 1 2 3 29 29 H 1.09001 * 113.62128 * 105.50533 * 6 4 2 30 30 H 1.09002 * 113.68829 * 334.60308 * 6 4 2 31 31 H 1.08998 * 109.47118 * 207.46319 * 9 7 6 32 32 H 1.09000 * 109.46852 * 327.46650 * 9 7 6 33 33 H 1.08997 * 109.46624 * 90.00340 * 13 12 10 34 34 H 1.09003 * 109.46750 * 209.99775 * 13 12 10 35 35 H 1.09000 * 109.47099 * 330.00185 * 13 12 10 36 36 H 1.09002 * 109.47368 * 210.00133 * 14 12 10 37 37 H 1.09003 * 109.47016 * 329.99822 * 14 12 10 38 38 H 0.97000 * 119.99886 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47153 * 279.13255 * 24 23 4 40 40 H 1.09001 * 109.46832 * 159.13446 * 24 23 4 41 41 H 1.09004 * 109.47261 * 39.13427 * 24 23 4 42 42 H 1.09003 * 109.46687 * 200.87007 * 25 23 4 43 43 H 1.08993 * 109.47313 * 320.85949 * 25 23 4 44 44 H 1.08992 * 109.47161 * 80.87337 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.6767 -2.1320 -0.4052 6 6 2.9390 -1.6288 1.3440 7 6 4.1350 -2.1446 0.5265 8 1 4.0628 -3.2005 0.2657 9 6 5.4939 -1.7715 1.1225 10 6 5.9095 -2.8206 2.1211 11 8 5.1900 -3.7734 2.3348 12 7 7.0808 -2.7004 2.7769 13 6 7.9502 -1.5498 2.5184 14 6 7.4852 -3.7206 3.7473 15 6 8.2768 -4.7947 3.0467 16 1 8.4607 -4.7241 1.9848 17 6 8.7663 -5.8673 3.7613 18 7 8.5428 -5.9530 5.0545 19 14 9.7482 -7.1983 2.8929 20 1 10.9571 -6.5975 2.2743 21 1 10.1580 -8.2325 3.8766 22 1 8.9103 -7.8225 1.8376 23 6 3.6744 -1.1999 -0.5962 24 6 4.2763 0.2035 -0.5017 25 6 3.7965 -1.8058 -1.9958 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 2.4310 -2.4073 1.9133 30 1 3.1672 -0.7471 1.9428 31 1 6.2361 -1.7133 0.3264 32 1 5.4189 -0.8050 1.6209 33 1 7.6937 -0.7400 3.2014 34 1 8.9901 -1.8386 2.6715 35 1 7.8136 -1.2150 1.4901 36 1 8.1006 -3.2621 4.5214 37 1 6.5980 -4.1613 4.2021 38 1 8.8875 -6.7075 5.5573 39 1 3.8855 0.8217 -1.3100 40 1 5.3613 0.1399 -0.5849 41 1 4.0110 0.6489 0.4572 42 1 4.8418 -2.0354 -2.2023 43 1 3.2064 -2.7207 -2.0483 44 1 3.4284 -1.0930 -2.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332068401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:29 Heat of formation + Delta-G solvation = -60.735330 kcal Electronic energy + Delta-G solvation = -22823.668519 eV Core-core repulsion = 19548.793539 eV Total energy + Delta-G solvation = -3274.874980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13882 -38.92464 -37.75321 -34.71995 -32.62476 -31.39247 -30.98248 -29.61318 -27.64050 -27.37873 -25.78447 -24.61440 -22.80625 -22.12828 -19.73751 -18.32912 -18.10838 -16.52740 -16.28663 -16.16266 -15.37688 -15.21833 -15.07567 -14.90630 -14.35592 -14.04547 -13.76035 -13.35053 -12.99800 -12.75275 -12.61046 -12.44184 -12.25393 -12.16394 -12.12578 -11.82423 -11.79004 -11.71632 -11.47003 -11.17233 -10.94019 -10.83972 -10.80261 -10.57615 -10.31282 -10.13732 -9.92077 -9.61019 -9.12809 -8.78068 -8.41368 -7.58230 -6.02153 -4.06968 1.79969 3.32817 3.36995 3.39471 3.53449 3.90026 4.05291 4.31663 4.45782 4.52033 4.72903 4.77962 4.92862 5.16339 5.19278 5.23068 5.29707 5.35278 5.43191 5.44703 5.59508 5.65897 5.66606 5.74115 5.78097 5.84658 5.91365 5.94760 5.98024 6.02490 6.07529 6.11884 6.25960 6.35527 6.42274 6.63017 7.10736 7.43237 7.47845 7.59380 7.94599 8.26500 8.49314 8.93167 9.17308 9.58174 11.05848 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.003620 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.935286 B = 7733.712671 C = 7778.078343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.365 3.635 3 O -0.453 6.453 4 C -0.164 4.164 5 H 0.111 0.889 6 C -0.108 4.108 7 C -0.078 4.078 8 H 0.104 0.896 9 C -0.129 4.129 10 C 0.503 3.497 11 O -0.543 6.543 12 N -0.606 5.606 13 C 0.084 3.916 14 C 0.245 3.755 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.067 4.067 24 C -0.119 4.119 25 C -0.137 4.137 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 12.806 -11.444 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.242 3.758 3 O -0.327 6.327 4 C -0.183 4.183 5 H 0.129 0.871 6 C -0.146 4.146 7 C -0.097 4.097 8 H 0.122 0.878 9 C -0.169 4.169 10 C 0.290 3.710 11 O -0.421 6.421 12 N -0.338 5.338 13 C -0.060 4.060 14 C 0.126 3.874 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.067 4.067 24 C -0.176 4.176 25 C -0.194 4.194 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.117 12.741 -11.143 20.816 hybrid contribution 0.563 -0.890 -0.420 1.134 sum -11.554 11.851 -11.562 20.190 Atomic orbital electron populations 1.22339 0.95075 1.04384 1.04501 1.24450 0.91515 0.90121 0.69763 1.90404 1.71319 1.35277 1.35679 1.23392 0.96630 0.97405 1.00862 0.87066 1.22875 0.96554 1.01287 0.93865 1.22381 0.92738 0.99985 0.94589 0.87768 1.21681 0.97821 0.98852 0.98522 1.20399 0.81553 0.86922 0.82134 1.90643 1.52924 1.33101 1.65444 1.48175 1.18678 1.24403 1.42527 1.21624 0.96117 0.88554 0.99727 1.19253 0.96167 0.85213 0.86772 1.21412 1.33482 1.06454 0.95117 0.92573 1.24940 0.96408 0.97931 0.94865 1.69928 1.45892 1.31172 1.06491 0.86562 0.80195 0.81362 0.79317 1.20268 1.21178 1.20184 1.21878 0.93181 0.96825 0.94824 1.21733 0.99099 0.93515 1.03282 1.21761 1.02264 1.00210 0.95213 0.88757 0.90066 0.89864 0.90203 0.89991 0.89400 0.89567 0.93871 0.90913 0.92446 0.95185 0.93912 0.92693 0.92618 0.93200 0.91006 0.92052 0.92404 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.40 10.25 36.00 0.37 -1.03 16 2 C 0.37 3.64 6.66 -29.03 -0.19 3.45 16 3 O -0.45 -5.78 13.26 6.00 0.08 -5.70 16 4 C -0.16 -1.65 3.58 -90.81 -0.33 -1.98 16 5 H 0.11 0.94 7.97 -51.93 -0.41 0.53 16 6 C -0.11 -1.33 6.84 -25.78 -0.18 -1.51 16 7 C -0.08 -1.06 2.66 -89.80 -0.24 -1.30 16 8 H 0.10 1.60 7.63 -51.93 -0.40 1.20 16 9 C -0.13 -1.90 2.88 -27.89 -0.08 -1.98 16 10 C 0.50 10.42 7.67 -10.99 -0.08 10.34 16 11 O -0.54 -13.48 15.34 5.55 0.09 -13.39 16 12 N -0.61 -13.05 2.86 -182.95 -0.52 -13.57 16 13 C 0.08 1.36 10.24 59.85 0.61 1.97 16 14 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 15 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.07 -0.74 1.22 -153.69 -0.19 -0.93 16 24 C -0.12 -1.36 6.22 37.16 0.23 -1.13 16 25 C -0.14 -1.36 9.18 37.16 0.34 -1.02 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.02 7.36 -51.93 -0.38 0.64 16 31 H 0.09 1.18 7.13 -51.93 -0.37 0.81 16 32 H 0.09 1.14 7.26 -51.93 -0.38 0.76 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.05 0.65 7.43 -51.93 -0.39 0.26 16 40 H 0.05 0.53 7.31 -51.93 -0.38 0.15 16 41 H 0.07 0.89 5.68 -51.93 -0.30 0.60 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.54 7.98 -51.93 -0.41 0.13 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -33.79 351.86 -6.99 -40.79 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.48 Total: -1.85 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.18 Total: -2.40 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.21 Total: -39.75 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.79 -6.99 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332068401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.948 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds