Wall clock time and date at job start Tue Mar 31 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99916 * 2 1 4 4 H 1.09002 * 109.47060 * 330.00512 * 3 2 1 5 5 C 1.53000 * 109.47032 * 89.99670 * 3 2 1 6 6 C 1.53007 * 109.46749 * 60.00000 * 5 3 2 7 7 C 1.53000 * 109.46923 * 60.00067 * 6 5 3 8 8 C 1.53001 * 109.46985 * 299.99564 * 7 6 5 9 9 H 1.09002 * 109.47562 * 300.00339 * 8 7 6 10 10 C 1.53005 * 109.47296 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.46850 * 65.00072 * 10 8 7 12 12 O 1.21287 * 120.00167 * 359.97438 * 11 10 8 13 13 N 1.34779 * 119.99625 * 180.02562 * 11 10 8 14 14 C 1.37098 * 119.99668 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99817 * 222.43487 * 14 13 11 16 16 C 1.38951 * 120.00178 * 42.43038 * 14 13 11 17 17 N 1.31412 * 119.99820 * 19.28966 * 16 14 13 18 18 Si 1.86799 * 120.00138 * 199.29330 * 16 14 13 19 19 H 1.48495 * 109.47389 * 89.99984 * 18 16 14 20 20 H 1.48499 * 109.47155 * 210.00019 * 18 16 14 21 21 H 1.48504 * 109.47099 * 329.99743 * 18 16 14 22 22 C 1.46498 * 120.00249 * 0.02562 * 13 11 10 23 23 C 1.53002 * 117.49644 * 183.39762 * 22 13 11 24 24 C 1.53001 * 117.49856 * 114.73632 * 22 13 11 25 25 C 1.52991 * 109.47228 * 210.00194 * 3 2 1 26 26 H 1.09002 * 109.46903 * 59.99810 * 1 2 3 27 27 H 1.08995 * 109.47012 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47176 * 300.00014 * 1 2 3 29 29 H 1.08997 * 109.46942 * 179.97438 * 5 3 2 30 30 H 1.08993 * 109.47500 * 300.00220 * 5 3 2 31 31 H 1.08992 * 109.47555 * 299.99809 * 6 5 3 32 32 H 1.08998 * 109.47313 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.47455 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47601 * 59.99777 * 7 6 5 35 35 H 1.08997 * 109.47367 * 185.00093 * 10 8 7 36 36 H 1.09002 * 109.46784 * 305.00653 * 10 8 7 37 37 H 0.96999 * 119.99770 * 174.76704 * 17 16 14 38 38 H 1.08995 * 115.54733 * 329.06223 * 22 13 11 39 39 H 1.09002 * 117.50190 * 359.97438 * 23 22 13 40 40 H 1.09005 * 117.49797 * 145.02440 * 23 22 13 41 41 H 1.08998 * 117.49445 * 214.97712 * 24 22 13 42 42 H 1.09002 * 117.50037 * 359.97294 * 24 22 13 43 43 H 1.08997 * 109.47508 * 180.02562 * 25 3 2 44 44 H 1.09003 * 109.47505 * 59.99405 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.1515 0.7973 2.1638 7 6 4.5001 0.7552 1.4425 8 6 4.2927 0.2893 0.0000 9 1 3.8493 -0.7065 0.0000 10 6 5.6415 0.2465 -0.7211 11 6 6.5178 -0.8020 -0.0856 12 8 6.1045 -1.4508 0.8521 13 7 7.7612 -1.0179 -0.5587 14 6 8.5582 -1.9721 0.0191 15 1 9.6031 -1.7663 0.1990 16 6 8.0218 -3.2040 0.3734 17 7 6.8927 -3.6080 -0.1642 18 14 8.9054 -4.2857 1.6137 19 1 8.4266 -3.9630 2.9818 20 1 8.6244 -5.7129 1.3148 21 1 10.3679 -4.0412 1.5306 22 6 8.2611 -0.2331 -1.6902 23 6 9.6495 -0.5795 -2.2317 24 6 9.4390 0.7084 -1.4315 25 6 3.3589 1.2634 -0.7212 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.6614 2.7670 1.4425 30 1 1.2569 1.8015 1.9563 31 1 2.7082 -0.1984 2.1638 32 1 3.2996 1.1294 3.1913 33 1 5.1656 0.0616 1.9565 34 1 4.9435 1.7509 1.4425 35 1 5.4843 0.0008 -1.7714 36 1 6.1256 1.2200 -0.6441 37 1 6.5571 -4.4983 0.0244 38 1 7.5070 0.0896 -2.4080 39 1 10.1912 -1.3910 -1.7457 40 1 9.8091 -0.4841 -3.3058 41 1 9.4601 1.6504 -1.9794 42 1 9.8418 0.7442 -0.4192 43 1 3.8024 2.2590 -0.7209 44 1 3.2112 0.9314 -1.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332151631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:27 Heat of formation + Delta-G solvation = -60.119578 kcal Electronic energy + Delta-G solvation = -23487.552031 eV Core-core repulsion = 20212.703751 eV Total energy + Delta-G solvation = -3274.848279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.41359 -38.32232 -36.39935 -35.42457 -32.78157 -31.74183 -30.70758 -29.90542 -26.99371 -26.37682 -24.42445 -22.17993 -21.71461 -21.38356 -20.86371 -19.35487 -18.78381 -16.32056 -15.97616 -15.94895 -15.51550 -15.19411 -14.64210 -14.52507 -14.09700 -13.89337 -13.63842 -13.20798 -12.97650 -12.50566 -12.35065 -12.22224 -11.75577 -11.57380 -11.48407 -11.28891 -11.09289 -10.90093 -10.81520 -10.78727 -10.54910 -10.34210 -10.12818 -10.01311 -9.92045 -9.75675 -9.66960 -9.59323 -9.22720 -8.60308 -7.77793 -6.88670 -6.00467 -3.74021 3.36496 3.43149 3.46694 3.93058 4.26782 4.35974 4.84524 4.87880 4.93221 5.02293 5.15343 5.31885 5.35681 5.39368 5.52371 5.55704 5.64058 5.68038 5.69296 5.77257 5.81432 5.86197 5.87658 5.96930 6.07681 6.17423 6.23541 6.27020 6.29090 6.33077 6.39560 6.48742 6.65844 6.72182 6.77277 6.86947 6.98999 7.14059 7.22531 7.39711 7.71127 8.37648 9.18679 9.30848 9.80416 10.46234 11.08466 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.005361 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.484347 B = 5221.498937 C = 6042.402638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.091 3.909 4 H 0.052 0.948 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.060 4.060 9 H 0.085 0.915 10 C -0.129 4.129 11 C 0.484 3.516 12 O -0.526 6.526 13 N -0.433 5.433 14 C -0.350 4.350 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.830 5.830 18 Si 0.910 3.090 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.079 3.921 23 C -0.176 4.176 24 C -0.209 4.209 25 C -0.111 4.111 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.262 0.738 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 11.240 -2.340 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.176 4.176 6 C -0.148 4.148 7 C -0.153 4.153 8 C -0.078 4.078 9 H 0.104 0.896 10 C -0.170 4.170 11 C 0.271 3.729 12 O -0.403 6.403 13 N -0.154 5.154 14 C -0.477 4.477 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.463 5.463 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.028 4.028 23 C -0.214 4.214 24 C -0.248 4.248 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.196 10.585 -1.794 13.506 hybrid contribution 0.200 -0.279 0.334 0.479 sum -7.995 10.306 -1.459 13.125 Atomic orbital electron populations 1.22738 0.82193 1.02420 0.99248 1.88048 1.18522 1.27625 1.94909 1.22117 0.94795 0.84316 0.95411 0.92954 1.22026 0.99747 0.99584 0.96291 1.21392 0.95983 0.99653 0.97773 1.21674 0.96824 1.00756 0.96029 1.20711 0.93290 0.99826 0.94019 0.89647 1.21670 0.96095 0.99177 1.00041 1.19783 0.82874 0.84968 0.85227 1.90484 1.71773 1.48814 1.29223 1.42847 1.13592 1.32927 1.26064 1.18817 0.93912 0.93538 1.41394 0.90752 1.25174 0.95353 0.96622 0.96456 1.69839 1.19752 1.17543 1.39216 0.86262 0.79075 0.78752 0.82183 1.20428 1.21439 1.20074 1.21658 0.89976 0.98107 0.93041 1.23068 1.00908 0.99109 0.98290 1.23314 1.06472 0.93667 1.01356 1.21734 0.93781 1.00258 0.99121 0.94566 0.89936 0.94545 0.91516 0.92707 0.91369 0.92990 0.89175 0.93690 0.91219 0.91292 0.92744 0.88123 0.87584 0.89940 0.89950 0.89208 0.91191 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.44 16 2 O -0.37 -5.66 9.00 -35.23 -0.32 -5.98 16 3 C 0.09 1.21 2.92 -26.74 -0.08 1.14 16 4 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 5 C -0.14 -1.78 5.63 -26.73 -0.15 -1.93 16 6 C -0.11 -1.73 5.78 -26.73 -0.15 -1.88 16 7 C -0.12 -2.08 4.94 -26.73 -0.13 -2.21 16 8 C -0.06 -1.09 1.69 -90.61 -0.15 -1.25 16 9 H 0.09 1.89 7.49 -51.93 -0.39 1.51 16 10 C -0.13 -2.53 3.79 -27.88 -0.11 -2.63 16 11 C 0.48 12.28 6.69 -10.98 -0.07 12.20 16 12 O -0.53 -15.27 11.59 5.55 0.06 -15.21 16 13 N -0.43 -10.97 2.85 -107.73 -0.31 -11.28 16 14 C -0.35 -9.69 8.00 -14.93 -0.12 -9.81 16 15 H 0.07 2.01 7.18 -52.49 -0.38 1.63 16 16 C 0.07 2.13 4.35 -17.47 -0.08 2.06 16 17 N -0.83 -25.05 11.65 55.50 0.65 -24.41 16 18 Si 0.91 22.40 29.60 -169.99 -5.03 17.37 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 C 0.08 1.60 5.87 -67.93 -0.40 1.21 16 23 C -0.18 -3.25 9.80 -26.69 -0.26 -3.51 16 24 C -0.21 -3.64 10.36 -26.69 -0.28 -3.92 16 25 C -0.11 -1.60 4.95 -26.73 -0.13 -1.73 16 26 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.63 7.87 -51.93 -0.41 0.23 16 31 H 0.07 1.19 7.68 -51.93 -0.40 0.79 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.98 5.95 -51.93 -0.31 1.67 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.30 7.57 -51.93 -0.39 0.91 16 36 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.26 7.64 8.32 -40.82 -0.34 7.30 16 38 H 0.10 1.85 6.95 -51.93 -0.36 1.48 16 39 H 0.11 2.17 6.68 -51.93 -0.35 1.83 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -32.67 342.41 -8.38 -41.06 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.58 Total: 4.11 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.02 Total: -10.83 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.34 Total: -35.68 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.25 Total: -21.19 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.67 -8.38 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332151631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.065 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds